RNA id: XM_039794270.1


Basic Information

Item Value
RNA id XM_039794270.1
length 2727
RNA type mRNA
GC content 0.47
exon number 13
gene id wdsub1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19446170 ~ 19458999 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTTCTCCAGTTTATGTTCTCAATTTTAGAGGGTGACGTAACCCACATTACGTCACAGTCAGCTGTTCGATGAGGAAGTAAACAATATTCAACTGAACGGACAACACGGCGGAGAAAGGACCGGCTCTCCAAATGACGTCTCTGATTTGCACTTTACAAGACCATCGAGACGATGTCAACTGGTGTGCCTTCTCTGGCAAACTGTTTGCCACATGTTCTGGGGACAAAACTCTGCGGATATACAACACCTGTGACTTCTCGGAGCTGCCCTTTTCACCGCTGTCAGGACATGGCTACGGCGTCCACTGCTGTTGCTTCAGCTCCTGCGGACAGTTCCTCGTCTCGTGTTCGACTGACGCAACCACGATGGTTTGGTCCACGGTCACGGGTGAGATCGAGGCCGTCCTGGAGCATCCTGGTCGTAGTCCTGTGAGGATCTGTGCGCTCTCTCCTGACTCTGCTCACCTGGTTTCTGGTGCATCTGATGGCACTTTGGCTCTGTGGGATTTCCCCTCCAAACAGCTGCACAGGACTGGAGCAGTGTCTGACACGACAATGGTAGCCCTCTCCTTCAGCCCCTGCAGTCAGGTGTTTATGAGCGGCTCCAGCTACGGGGACCTGCGTCTGTGGGACCTGGACATGAACCAGCTCCTTGCAGAAAAAAATGCCCACGACCTGGGGGTCACCTGCTGCGTCTTTGCTCCCAACATCCTCAGTGgTGGTCAAGTTGTGCAGTTTCGTTTGGCGTCCTGTGGACAAGACAGTCACCTGAAGATCTGGGCCATCAACAAGTTCAGCTCAGGAGgCTATAAGATGCAGCTCCTGCACACATTAACGGGCCAGTCGGCTCCGGTCCTCTGCTGTGCGTACTCCTCAGATGGGCAGCTGCTTGTGTCTGGCTCTGTGGACAAAACTGTCACAGTCTATGATGCTAATAATGCAGTTTTGCTTTACACACTGAACCAGCACGAGAGGTACGTGACGGCATGTTCCTTCTCTCCAACTTTACCTCTGATTGCTACAGGATCTATGGATAAGACTGTAAACATCTGGAGGCTGGAGGACGGATGCAATGACCATGGCGGGAAGTCGTTGCCTGAGCAGTCTGCGCTGACATCAAGTGAAGGGAGAACCTCAGCGGGCCGATCCAAGCTGCTGGTCAGCGATTGGTCGGAGGGGGATGTGTCAACGTGGCTGGTGGACGAAAGCCTCGAGGGACTGGTGGACAAATTCAGGGCCAACAACATAGATGGGACAGAGCTGCTCAGTCTCACCAAGGAAACACTGGCGTCAGAGCTGCACATAGagtcaGTAGGCCTGCGCAGTAAAATCCTGAGGAAGGTGGAGGACCTGAAGAGTGATTCAGTATGTTCAGGCATTCCTGATGAGTTCCTGTGTCCAATCACCAGGGAGCTGATGAGGGAACCAGTCATTGCTGCCGATGGATACTCGTATGAAAGAGAGGCCATCGATAGCTGGATCAACAATAAGAACCGCTCCAGCCCCATGACCAACCTCCCCTTACTGACAACTCTTCTCACCCCTAATCACACCCTGAAGATGGCTATTGGCCGCTGGAAGACCAGCCACTAGCATCTGAAAGACCTTTGACCCACCCACATGTTTCCCCCAAAGTAGAAAGAAACCACAGTATTTCAGGTACAGGTGCATCTGATTTTGTTCCATCTGAGGCATCTGGACACTGTGGGAAtttctttgttgtttctttgttgCATTAATTTATAAAGTTGAGATTTGGCATCTTAAGCTacaaagagagtgaatattggacttacattcaccaTGTGGCCACAAACACAACTTCAAATTAATTATCATGTTGCTccgtaactgctggatgtgtaaataaacaaCTGTAAGCCAACAAGTTGACCATATCAGCTTACAAGGtaatatgttcatgttgtgttcacagcttGATCTCAGCGTTGATCTCTTTGCATCGCTTAAGGTTAGACATTCTTCACCAGTCACACAAGTGGTTTCTTTTGGCTGATAATGGCCAGTTTTCTGgtttgttaataataataaaaaagtgagTTCTTCATTAGTGCTGTACAGACACCACATAAccataaaaaataatacaaaatgtcaACAACACTGTAGGCTCCTAATTTTAAAAACAAGTCATAAAGTGTACATGAATAAAATTAAAACCTTATCTTACACAGGTTGCTATTTTGCTCATTTATTATCTTAAAATGAGTTGcatggggcgacctctagctcacccagtaagagcgtgcgccccatgtaggaggagtcctttgcagcggcccgggttcgaatccaacctgcggccctttgctgcgtgtcgtcccctctctttctctccctctttactGTCTATCAACTCTTACTATcgaaaagggaaaaagccccaaaaactaatctaaaaaagcaaaaagagTTGCATTTATAACATATGTATTAATAAAGATTCTTATGAAAAGCTAATCGAATAGCTTTATAAGGACACAAATTGGGAGGCCTTTAGTGTTGTGTGCATTTTACattaattatgactttttattgactgACTACCCAGAAAACATCGAGCTGTGAGTGTCTGAAAGCTACCAACAGCCCCTTCACATTAAGGAGAGTCTATTGATTCAATGGTTATTTTAGAAGTATTGCTGTAACGGGCTTTGCATGAACATAATGTCGGTTATCTTACTAAAAACAATATCTGCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37927 lncRNA upstream 102045 19323032 ~ 19344125 (+) True G28526
TU37890 lncRNA upstream 215542 19229955 ~ 19230628 (+) True G28492
TU37873 lncRNA upstream 247943 19196746 ~ 19198227 (+) True G28479
TU37867 lncRNA upstream 252905 19191772 ~ 19193265 (+) True G28474
TU37865 lncRNA upstream 255008 19190118 ~ 19191162 (+) True G28473
TU38003 lncRNA downstream 5211 19464210 ~ 19464532 (+) True G28571
TU38004 lncRNA downstream 6051 19465050 ~ 19465340 (+) True G28572
TU38005 lncRNA downstream 7313 19466312 ~ 19466524 (+) True G28573
TU38006 lncRNA downstream 7629 19466628 ~ 19468243 (+) True G28574
TU38007 lncRNA downstream 9305 19468304 ~ 19468663 (+) True G28575
XM_039794222.1 mRNA upstream 1501 19373981 ~ 19444669 (+) False baz2ba
XM_039795788.1 mRNA downstream 53357 19512356 ~ 19520218 (+) True ercc3
XM_039796202.1 mRNA downstream 69086 19528085 ~ 19533813 (+) True LOC120556555
XM_039796192.1 mRNA downstream 76698 19535697 ~ 19545656 (+) True LOC120556547
XM_039795388.1 mRNA downstream 90355 19549354 ~ 19561725 (+) True rbm26
XM_039795387.1 mRNA downstream 90355 19549354 ~ 19561144 (+) False rbm26
TU37478 other upstream 877690 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1703436 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3959749 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3999778 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 6208351 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 28247 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 38739 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 39094 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 53357 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1252105 20711104 ~ 20761147 (+) True G28770

Expression Profile