RNA id: XM_039794274.1


Basic Information

Item Value
RNA id XM_039794274.1
length 1150
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC120555529
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6070600 ~ 6079167 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGAACACTCCCCagtctgctgctgttgctgtccTATAACCATGATGCTCCAGGCGGCTGTGCTCAGtgtcctcttcttctctgtccACAGTTTTACTATACAGGCTTCCTTTGAAAAGCGTGACGAGAACTCTGGCAACACCATTGAAGATGACGATTTCAGTGTGTCCACGCTGTTAGAGAAGGCCAATGTTAATCTTGGAAAGAACTTTGATGACCCTCTGGTGTTATTTGGAGACATAGCAGTGCCAATAGGTCTACAGAACGCTGATCCCTGCACAGCACGAGGCTGCCTGTGGCCTAAAGCCACCGACGGCAACGTCTATGTACCCTACCGCATCTCCGATGAGTACTccacaagagagagacaaaccaTTGTCCAAGGCCTGCAGTCCTTTGCGCAGTCCACTTGCATCCGCTTCACCCCCTTGTCTAACGGACAGAGGGACTTTGTGGACATCCAGTCTCTCGGAGGGTGTTTCTCATATATTGGGCGTCGTGGTAATGGCCAGGTAGTGTCTTTGATGCGCCAGGGCTGTGTTTTCCTGGAGATCATCCAACACGAGCTGCTCCACGCCCTGGGCTTCCACCATGAACAGAACCGGTCAGACAGGGACGAGCATGTTCGCATCCTGCTGCAGAACGTCATTCCTGGATTGGAGTCCCAATTCACCAAGGTCCAAACAAGGAACCTTGGCACTCCCTATGACTACGGCTCTGTCATGCAATATGGAAGGTTTGCCTTCTCTAGTAACAGGCAGCCAACCATCGTTCCTATCCCCGACAACAATGTAGCCATTGGCAGAGCCACCCAGATGAGTCCTAATGACATCCTTCGGGTGAACCGCCTGTATGGCTGCAATTCGACTGCTTCCAGACATTACTTGAAACCTGGCCAAAGAAAGCATTTCCTCTAAAAATGAAAGAAATCCAGAGCAAATGAGGCAAACAGATGAAATGTTTTACAAGCAAAACCAGAAATGCATCTTGTGCTTAACGAATGTGCTTTTATTCAGAATTTGATCAAATGAACTTGCATGCTGTCCTAATGAGAAATGAAGTGTCCAATGACATCATCACAAATAATGCAAATATCCACTTTGAGCTTGAttactaataataaataaaacatgcttATTCGCATCATAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34434 lncRNA downstream 164933 5905356 ~ 5905667 (-) True G25674
TU34432 lncRNA downstream 185439 5884844 ~ 5885161 (-) True G25672
TU34427 lncRNA downstream 192582 5876253 ~ 5878018 (-) True G25667
TU34404 lncRNA downstream 255916 5814479 ~ 5814684 (-) True G25646
TU34402 lncRNA downstream 263502 5802645 ~ 5807098 (-) True G25644
XR_005638728.1 lncRNA upstream 43880 6123047 ~ 6125990 (-) False LOC120555539
XR_005638727.1 lncRNA upstream 43880 6123047 ~ 6125990 (-) True LOC120555539
XR_005638729.1 lncRNA upstream 130727 6209894 ~ 6211078 (-) True LOC120555540
TU34580 lncRNA upstream 174156 6253323 ~ 6311134 (-) True G25759
TU34592 lncRNA upstream 234816 6313983 ~ 6314207 (-) True G25769
XM_039794275.1 mRNA downstream 3374 6060618 ~ 6067226 (-) True LOC120555530
XM_039794276.1 mRNA downstream 19911 6038425 ~ 6050689 (-) True LOC120555531
XM_039794277.1 mRNA downstream 20018 6038425 ~ 6050582 (-) False LOC120555531
XM_039796034.1 mRNA downstream 353167 5680622 ~ 5717433 (-) False LOC120556425
XM_039796033.1 mRNA downstream 353168 5682186 ~ 5717432 (-) True LOC120556425
XM_039794279.1 mRNA upstream 35044 6114211 ~ 6126128 (-) True LOC120555532
XM_039794280.1 mRNA upstream 66262 6145429 ~ 6153413 (-) True LOC120555533
XM_039794281.1 mRNA upstream 77055 6156222 ~ 6167529 (-) True LOC120555534
XM_039794283.1 mRNA upstream 104465 6183632 ~ 6193536 (-) True LOC120555536
XM_039794282.1 mRNA upstream 155013 6234180 ~ 6241650 (-) True LOC120555535
TU33895 other downstream 3793509 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 3794591 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 4237206 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638786.1 other downstream 4428252 1588886 ~ 1642348 (-) False LOC120556047
TU33668 other downstream 4613509 1431968 ~ 1457091 (-) False LOC120555898
XR_005638726.1 other upstream 77055 6156222 ~ 6167529 (-) False LOC120555534
TU34701 other upstream 563279 6642446 ~ 6644606 (-) False dok4
XR_005638761.1 other upstream 1253617 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 2065040 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 2773620 8852787 ~ 8979076 (-) False LOC120555589

Expression Profile