Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039794280.1 |
| length | 1172 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 10 |
| gene id | LOC120555533 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053114.1 |
| NCBI id | CM020911.1 |
| chromosome length | 46923577 |
| location | 6145429 ~ 6153413 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0006508 | proteolysis | biological_process |
| GO:0004222 | metalloendopeptidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K08076 | E3.4.24.21; astacin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_005638728.1 | lncRNA | downstream | 19439 | 6123047 ~ 6125990 (-) | False | LOC120555539 |
| XR_005638727.1 | lncRNA | downstream | 19439 | 6123047 ~ 6125990 (-) | True | LOC120555539 |
| TU34434 | lncRNA | downstream | 239762 | 5905356 ~ 5905667 (-) | True | G25674 |
| TU34432 | lncRNA | downstream | 260268 | 5884844 ~ 5885161 (-) | True | G25672 |
| TU34427 | lncRNA | downstream | 267411 | 5876253 ~ 5878018 (-) | True | G25667 |
| XR_005638729.1 | lncRNA | upstream | 56481 | 6209894 ~ 6211078 (-) | True | LOC120555540 |
| TU34580 | lncRNA | upstream | 99910 | 6253323 ~ 6311134 (-) | True | G25759 |
| TU34592 | lncRNA | upstream | 160570 | 6313983 ~ 6314207 (-) | True | G25769 |
| TU34610 | lncRNA | upstream | 169864 | 6323277 ~ 6326642 (-) | False | ankdd1a |
| TU34609 | lncRNA | upstream | 170003 | 6323416 ~ 6326642 (-) | False | ankdd1a |
| XM_039794279.1 | mRNA | downstream | 19301 | 6114211 ~ 6126128 (-) | True | LOC120555532 |
| XM_039794274.1 | mRNA | downstream | 66262 | 6070600 ~ 6079167 (-) | True | LOC120555529 |
| XM_039794275.1 | mRNA | downstream | 78203 | 6060618 ~ 6067226 (-) | True | LOC120555530 |
| XM_039794276.1 | mRNA | downstream | 94740 | 6038425 ~ 6050689 (-) | True | LOC120555531 |
| XM_039794277.1 | mRNA | downstream | 94847 | 6038425 ~ 6050582 (-) | False | LOC120555531 |
| XM_039794281.1 | mRNA | upstream | 2809 | 6156222 ~ 6167529 (-) | True | LOC120555534 |
| XM_039794283.1 | mRNA | upstream | 30219 | 6183632 ~ 6193536 (-) | True | LOC120555536 |
| XM_039794282.1 | mRNA | upstream | 80767 | 6234180 ~ 6241650 (-) | True | LOC120555535 |
| XM_039794286.1 | mRNA | upstream | 124724 | 6278137 ~ 6281524 (-) | True | LOC120555542 |
| XM_039795700.1 | mRNA | upstream | 162097 | 6315510 ~ 6321567 (-) | True | znf414 |
| TU33895 | other | downstream | 3868338 | 2275475 ~ 2277091 (-) | True | G25228 |
| TU33896 | other | downstream | 3869420 | 2275475 ~ 2276009 (-) | False | G25228 |
| unassigned_transcript_137 | other | downstream | 4312035 | 1833321 ~ 1833394 (-) | True | trnat-agu_3 |
| XR_005638786.1 | other | downstream | 4503081 | 1588886 ~ 1642348 (-) | False | LOC120556047 |
| TU33668 | other | downstream | 4688338 | 1431968 ~ 1457091 (-) | False | LOC120555898 |
| XR_005638726.1 | other | upstream | 2809 | 6156222 ~ 6167529 (-) | False | LOC120555534 |
| TU34701 | other | upstream | 489033 | 6642446 ~ 6644606 (-) | False | dok4 |
| XR_005638761.1 | other | upstream | 1179371 | 7332784 ~ 7344756 (-) | False | lmnl3 |
| TU34939 | other | upstream | 1990794 | 8144207 ~ 8146901 (-) | True | G26071 |
| TU35108 | other | upstream | 2699374 | 8852787 ~ 8979076 (-) | False | LOC120555589 |
