RNA id: XM_039794283.1


Basic Information

Item Value
RNA id XM_039794283.1
length 867
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC120555536
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 6183632 ~ 6193536 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAACCATGATGCTCCAGGCGGCTGTGCTCAGtgtcctcttcttctctgtccACAGTTTTACTATACAGGCTTCTTTTGCAAAGTGCAACACCACTGAAGATGACGATTTCAGTGTGTCCACGCTGTTGCAGAAGGCCAATGTTAATCTTGGAAAGAACTTTGATGACCCTCTGGTGTTATTTGGAGACATAGCAGTACCAACAGGTCTACAGAACGCTGATCCCTGCACAGCACGAGGCTGCCTGTGGCCTAAAGCCTCCGATGGCAACGTCTATGTACCCTACCGCATCTCCAACGAGTACTCCACGCGAGAGAGAAAAATCATAGTCCAAGCCCTGCAGTCATTTGCTCAGTGCACTTGCATCCGCTTCACCCCCTTGACTAACGGACAGGAGGACTTTATTGACATCCAGTCTCGCGAAGGGTGTTACTCATTTGTTGGACGTCGTGGTGATGGCCAGGTACTGTCTTTGAAACGTCCGGGCTGTGTTTACCACCAGGTCATCCAACATGAGCTGCTCCACGCCCTGGGCTTCAACCATGAACAGACTCGGTCCGACAGGGACCAGCATGTTCGCATCCTGCTGGAGAACGTCGAGCCTGGCATGGAGCACAATTTCAGGAAGATCGAAACAAGGAACCTTGGCACTCCCTATGACTATGGCTCTATCATGCACTATGGAAGGTATGACTTCTCTAAGAACTGTCAGCCAACCATCATTCCTATCCCTGACAACAACGTAGCCATTGGCAGAGCCACCCAGATGAGTCCTACTGACATCCTTCGGGTGAACCGCCTGTATGGCTGCAAATCGACTGCTTCCAGACGTCACCTGAAACCTGTGCAAAGAAAGCGCTTCCTCTAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08076 E3.4.24.21; astacin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638728.1 lncRNA downstream 57642 6123047 ~ 6125990 (-) False LOC120555539
XR_005638727.1 lncRNA downstream 57642 6123047 ~ 6125990 (-) True LOC120555539
TU34434 lncRNA downstream 277965 5905356 ~ 5905667 (-) True G25674
TU34432 lncRNA downstream 298471 5884844 ~ 5885161 (-) True G25672
TU34427 lncRNA downstream 305614 5876253 ~ 5878018 (-) True G25667
XR_005638729.1 lncRNA upstream 16358 6209894 ~ 6211078 (-) True LOC120555540
TU34580 lncRNA upstream 59787 6253323 ~ 6311134 (-) True G25759
TU34592 lncRNA upstream 120447 6313983 ~ 6314207 (-) True G25769
TU34610 lncRNA upstream 129741 6323277 ~ 6326642 (-) False ankdd1a
TU34609 lncRNA upstream 129880 6323416 ~ 6326642 (-) False ankdd1a
XM_039794281.1 mRNA downstream 16103 6156222 ~ 6167529 (-) True LOC120555534
XM_039794280.1 mRNA downstream 30219 6145429 ~ 6153413 (-) True LOC120555533
XM_039794279.1 mRNA downstream 57504 6114211 ~ 6126128 (-) True LOC120555532
XM_039794274.1 mRNA downstream 104465 6070600 ~ 6079167 (-) True LOC120555529
XM_039794275.1 mRNA downstream 116406 6060618 ~ 6067226 (-) True LOC120555530
XM_039794282.1 mRNA upstream 40644 6234180 ~ 6241650 (-) True LOC120555535
XM_039794286.1 mRNA upstream 84601 6278137 ~ 6281524 (-) True LOC120555542
XM_039795700.1 mRNA upstream 121974 6315510 ~ 6321567 (-) True znf414
XM_039795701.1 mRNA upstream 129745 6323281 ~ 6346561 (-) True ankdd1a
XM_039795605.1 mRNA upstream 153653 6347189 ~ 6379078 (-) True plekho2
XR_005638726.1 other downstream 16103 6156222 ~ 6167529 (-) False LOC120555534
TU33895 other downstream 3906541 2275475 ~ 2277091 (-) True G25228
TU33896 other downstream 3907623 2275475 ~ 2276009 (-) False G25228
unassigned_transcript_137 other downstream 4350238 1833321 ~ 1833394 (-) True trnat-agu_3
XR_005638786.1 other downstream 4541284 1588886 ~ 1642348 (-) False LOC120556047
TU34701 other upstream 448910 6642446 ~ 6644606 (-) False dok4
XR_005638761.1 other upstream 1139248 7332784 ~ 7344756 (-) False lmnl3
TU34939 other upstream 1950671 8144207 ~ 8146901 (-) True G26071
TU35108 other upstream 2659251 8852787 ~ 8979076 (-) False LOC120555589
TU35186 other upstream 3101532 9295068 ~ 9296746 (-) True G26298

Expression Profile