Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073496 |
| length | 829 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 4 |
| gene id | XLOC_037350 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 38883388 ~ 38993033 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001578 | microtubule bundle formation | biological_process |
| GO:0021954 | central nervous system neuron development | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0031175 | neuron projection development | biological_process |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0015631 | tubulin binding | molecular_function |
| GO:0008017 | microtubule binding | molecular_function |
| id | description |
|---|---|
| ko04812 | Cytoskeleton proteins |
| id | description |
|---|---|
| ZDB-GENE-041010-118 | Predicted to enable microtubule binding activity. Predicted to be involved in microtubule cytoskeleton organization and neuron projection development. Predicted to act upstream of or within central nervous system neuron development and microtubule bundle formation. Predicted to be located in cytoplasm and microtubule. Predicted to be active in neuron projection. Is expressed in brain and central nervous system. Orthologous to human MAP2 (microtubule associated protein 2). |
| ensembl_id | ENSDART00000144893 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073476 | lncRNA | upstream | 365564 | 38615603 ~ 38618331 (+) | True | XLOC_037344 |
| TCONS_00073469 | lncRNA | upstream | 513088 | 38470041 ~ 38470807 (+) | False | XLOC_037341 |
| TCONS_00073463 | lncRNA | upstream | 562859 | 38420012 ~ 38421036 (+) | False | XLOC_037338 |
| TCONS_00073462 | lncRNA | upstream | 565784 | 38412748 ~ 38418111 (+) | True | XLOC_037337 |
| TCONS_00073455 | lncRNA | upstream | 675325 | 38307686 ~ 38308570 (+) | True | XLOC_037333 |
| TCONS_00074931 | lncRNA | downstream | 871887 | 39863253 ~ 39865672 (+) | True | XLOC_037353 |
| TCONS_00073518 | lncRNA | downstream | 2088728 | 41080094 ~ 41083181 (+) | False | XLOC_037363 |
| TCONS_00073517 | lncRNA | downstream | 2088728 | 41080094 ~ 41083181 (+) | True | XLOC_037363 |
| TCONS_00073527 | lncRNA | downstream | 2246875 | 41238241 ~ 41240872 (+) | False | XLOC_037366 |
| TCONS_00075179 | lncRNA | downstream | 2246875 | 41238241 ~ 41246508 (+) | False | XLOC_037366 |
| TCONS_00073495 | mRNA | upstream | 8867 | 38967998 ~ 38975028 (+) | False | XLOC_037350 |
| TCONS_00073491 | mRNA | upstream | 15896 | 38888025 ~ 38967999 (+) | False | XLOC_037350 |
| TCONS_00073490 | mRNA | upstream | 24699 | 38883388 ~ 38959196 (+) | False | XLOC_037350 |
| TCONS_00073486 | mRNA | upstream | 209492 | 38712474 ~ 38774403 (+) | False | XLOC_037348 |
| TCONS_00073488 | mRNA | upstream | 212168 | 38737924 ~ 38771727 (+) | True | XLOC_037348 |
| TCONS_00073500 | mRNA | downstream | 34945 | 39026311 ~ 39139722 (+) | False | XLOC_037352 |
| TCONS_00073501 | mRNA | downstream | 35757 | 39027123 ~ 39136765 (+) | False | XLOC_037352 |
| TCONS_00073502 | mRNA | downstream | 35946 | 39027312 ~ 39136845 (+) | False | XLOC_037352 |
| TCONS_00073503 | mRNA | downstream | 35946 | 39027312 ~ 39138504 (+) | True | XLOC_037352 |
| TCONS_00073506 | mRNA | downstream | 1555311 | 40546677 ~ 40617382 (+) | True | XLOC_037356 |
| TCONS_00073489 | other | upstream | 196851 | 38786928 ~ 38787044 (+) | True | XLOC_037349 |
| TCONS_00073487 | other | upstream | 239121 | 38737612 ~ 38744774 (+) | False | XLOC_037348 |
| TCONS_00073484 | other | upstream | 276385 | 38684871 ~ 38707510 (+) | False | XLOC_037347 |
| TCONS_00073453 | other | upstream | 672148 | 38292947 ~ 38311747 (+) | False | XLOC_037333 |
| TCONS_00073451 | other | upstream | 697107 | 38279383 ~ 38286788 (+) | True | XLOC_037332 |
| TCONS_00073497 | other | downstream | 19066 | 39010432 ~ 39011384 (+) | False | XLOC_037351 |
| TCONS_00073498 | other | downstream | 19079 | 39010445 ~ 39014598 (+) | False | XLOC_037351 |
| TCONS_00073499 | other | downstream | 19860 | 39011226 ~ 39013435 (+) | True | XLOC_037351 |
| TCONS_00073504 | other | downstream | 1146131 | 40137497 ~ 40137612 (+) | True | XLOC_037354 |
| TCONS_00073505 | other | downstream | 1286781 | 40278147 ~ 40278263 (+) | True | XLOC_037355 |
