RNA id: XM_039794288.1


Basic Information

Item Value
RNA id XM_039794288.1
length 6738
RNA type mRNA
GC content 0.48
exon number 35
gene id ly75
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19308338 ~ 19342577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTGAAAATATCCAGTGCGACACTTTGCCTTTGTTTTTTGATTGTGTTGGAGACAACAGTTTTCTTCGCAACTTGCTCACCGGCGGCTAACGTTAAAGGTTTCGACGAGGATGCTTTCACCATCCAGCACTCGAGCACAGGGAAGTGCCTAGTTACAGGGGCTTCTGCAGTATTGAGTCTCACCTCCTGTGATCAAAACAGCAGGTCCCAGCTGTGGAAGTGGGGTTCGGGTCAAAGGCTCTTCAATGTGAACACGTCCCTCTGCTTGGCGTTGGACGTCCGCTCCAAGGCCTTATCCCTGGTCGACTGTGGCTACAACATCCTGCTGTGGTGGCGTTGCCTGGATAGGGCTGTTTACACTACCTATCAAATGGGCCTGGCGGTCATCGATGGCAAAGTTGCCGCCAAACGGGACACTATTGACACTTGGGTAAGAGGAGGATCCCAGGACAACATCTGCCAGATGCTGTACCACGTCGTCTACACCACCGCTGGGAACTCTGCCGGCTCTCCCTGTGAGTTCCCCTTCAAATACAACGGCAGCTGGCATCACGGATGCCTCCCAGATGCAGATTTCCCTGGACTGTCCTGGTGTGCCACCTCATCAGACTACGACCAAGACAGAAAGAAGGGACACTGTCTAATACCTGAAGAGGGTTGCCAGACTCTGTTTGCCGGGCCGGAAGGGGAATCCTGCTATGAGTTTGTTTCCAGTGCTGCGGTGACCTGGCAGGAAGCTCTGGATTCATGTCGTAGTCAGGGAGCTGATCTGCTGAGTGTGTCTGAGCCGAACGATCTCCACTCCAAAACCTTATTGGACGGCCTTGAAGGAATGCCTGAAAGGATGTGGATCGGGCTTCACCAGTTAGACACTTCTCACGGCTGGCAGTGGTCAGATGGTTCCCCTCTCACCACTCTgcgctgggaaacagGAATGCCATCCACCCCCATACTTTTGGAGTTAGACTGTGGAGTCCTGAACTCCAAGCAGAAATATGAATCTGAGGCGTGCAACAAACGGCTGCCGTACATCTGCAAGAAGAGCGTCAATGCCTCTCACACCGCAACAACAGAGTCGTTTGTATATAAAGAAACGGCGTGTGCAGACGGTTGGGTCCCATGGAATGGCTGGTGTTACAAGTTGGTTAAGGACGAGCCTCTAGACTTTACAGATGCCCAGATGCACTGCAACAacacagagggaggagggggaggctTTCTGGCTAGCCTCCACTCTATTGACAGCAAGGAGATGATCAGCACTAATTTCCATGCagATTGCAAGTTGTTGGACGTGTGGATCGGTCTGATCGGTAACGGAATTGACACCACCGTCTTCAAGTGGATCGACGAGGCACCCGTCACTTTCACCTACTGGGACCAAAACCAACCAGTCCAGCCCACTCTGAATACCAGCTGTGTCTTCTACTCTggagagCATCATGGTTGGCGGGTTGGGGACTGCAAACAGAGGCTACCTTTTATGTGTCAGAAGAAAGGAGATGTCAAGGAGCCAGCGACACAGGACGGATGTAGCTTTGAGGATGGTTGGAGGAGACACGGCAACTCCTGTTATCAAGTGAACCCAAAAAAAGTACCCTTCAAAGATCGCTGCAACATCACTATAAGAAACAGGTTTGAGCAGGCCTTTATCAGCCGTCTACTTGGAGAGCAGATGAAGATGGAAACTCAGTATTTTTGGATAGGGCTGCAGGACATTAAGAACACAGGGGAGTACCAGTGGCTGAGCCAGGAGGGGTCCCCGGGTGTGGTTACATACACCAACTGGGGCTGGTTCGAACCAGATCGGGTCGGAGGTTGTGCAGTGATTTCCACCGCAAAACCCTTGGGCAAGTGGGAGGTGAAGAACTGTACCATTTTTAATGCCGGCACCATTTGTAGAAAAGACCTCAGTCCAGCCctagaaccagaaccagagccGAACCCCAACGTAACCTGTCCAGATGGATGGGTGTCCAGACCAAACATCAGATACTGctacaagGTGTTTCATGAGGAAAGGCTGAGCAGGAAGCGCTCCTGGAAGGAAGCTGAGATGTTCTGTCAGGCTCTGGGAGCCAACCTGCCCAGCTTCACTAACAATGGTGAGATGAGGGCCCTGCACAGCATCATGAGAGACACCATCAgTGATAATCGGTACTTCTGGGTTGGCCTGAACAGGAGAAACCCAGCTGATCGCTCCTGGCAGTGGAGCGATGGCCAGCCTGTGTCTATGGATGTTTTACACCAAGATTTCCATGAGGATGATGCATACAGTCGGGACTGCGCTGCATTCAAGACATCGAGGAGTACCTTGAAACAcctgtttgtgtttctgctgcACGACTTACCTCCGACACCTTTCTACGCCAGACCATTTCACTGTGACGCCAGGCTAGAGTGGGTGTGCCAAATACCCCGCGGAAAGACACCAAAGAACCCAGTCTGGTACAATCCCGGTGGACACCATGAGACCTCTATCTTCATAGATGGAGCAGAGTTTTGGTTTGTTAATGAGCCTAAGCTAACTTTTGAGGAGGCAAAGCTGTTTTGCAATTTGAATGACAGCAAACTGGCTGCACCACTCAGCTCAACTGCTGCCGGACAGATCAACCAGCACCTAAAAGATATGAATTCAAGTTCTCCCAAGCAAAGCTGGTGGGTCGATTTGACAGAGCCTTCCCGGGTATTCCCCATGACGTACGTCCAGATGTACTTCTACCATTCGGCTTTCCTGGGCAGATGCACCTCCATCAGTTCTGAACGCTTCTTTCCAGAGCATGAGCGCAGTTGCGATCAGCGattgtcttttgtgtgtgagagatacaACATCACTTCAGTGGAGCGAAACGCTCTGGATCCTCAACCTGGAGGACTGCCCTGTGAAAATCCATCTTTGCCTTTCAGAAATAAGtgCTACACACTGATGAGGAGCCAGAAGCCTGTGACATTTCAGTATGCAAATGACGATTGCCATTCGGTAAGGGGAACCCTGGTCACTATTTCAGATCAGGTGGAGCAAGACTTCATCACCACCCTTTTGCCGGAGCTGAGAAACATGGACAATATATGGATTGGTCTAAAGATCAAAAGTAACGACCCTCAATGGGTGGACCAGACCCCAGTTAACTACGTACATTTTAACCCCCTGCTTCTGGGCATGCACAAGGCCATACAAGTCAACTCATGGGATTCAGAGAGTatggatctgtgtgtgtttttggtgaaTAACCCCAACTCTGCCATGTTGGGTACCTGGGACTTTTCTTCCtgcacagacaaaaacagaaaaaatgtgGGCATTTGCCAGCACTATGCAGATAAACTAGAGGAGCCCCACATCCCAACAGAGCCATTCCAGGCCAATAACCACACCATTCTGCTGCTGGTCAAAAACCTCACCTGGTTTGAGGCCTTAGAGCAGTGCGATAGTAAAAACATGGAACTGGCAAGTGTGGCCGATACCCTCCTGCAGTCCATCCTCACTGTGCATGTGAGCCGTGCACGCACGCCCATGTGGATCGGCCTCTTTAGCGAAGACGAGGGAATCCACTACCGCTGGACTGACCACAGTCACACCGTATTCAGTCGCTGGTCTTCTGATGTCACCAGCGGCTCGTGTGTCTACCTGGACACCGATGGCTTCTGGAAAGCCACCGAGTGTGAGGAGGAGCTAGGAGGAGCTATCTGCCACAAACCACACAAAGAGATCATCACCACACCTGATGAGGTTGCAGTGAAGTGCCCCCATAAGATGAATGGTCCAAACTGGATCCCCTTTAAGAACAACTGCTACTCCTTCCAGCTGGTCGGCACCAGGTGGGACCAGTTTGACCAAGGACAGATTCTGGATACCTGCAAAAAACTGTatcCAGATGCAGACATTCTCACCATCCGAAATTCAGAGGAGAACGAATTTGTTACGCAGCAACTCATACCGTTTCAAAACTTGGTCCAGTTTGTATGGCTGGGGCTGTTCAAAGATGAAAACGATAACCAGATGAAGTGGTACGATGGCACAAATGTCCAATACTCCAACTGGGCAAAAGGCAGACCAGATGTAGACGGACCATTCATGGCTGGTCTCACCGTTGATAACAACTGGATTCTCATCTCAAACCCAAACTTATTCGCAGAGTTCAAACAAAGGACCATTGTGACCTGCAAACTGGACAACGAACCAAAACAGGAGTACAACGTGTCATCCAAGGATTTACGACATTACGGCAACTTAACTTATGAGGTCGTAACCCGAAAAATGAGTTGGTACCAGGCTCTGGCAGCGTGTGGTCAGCATGGAGGCCACCTGGCAAGTGTCCACGACATCCAGCACAGCGCGCACGTGAAGCTCATCGCTAAGACGGACGGCTTCTCGCTCTGGATTGGCCTGTCGAACCAGGATgttaGTGACTCAGCCTTTGAGTGGTCTGATGGAACGGGACTGGACTACAAAGCCACCATCTCTGACTCTTTGCAGGGCTCCAGCTCAGACAAACAAGAGGCCAGCTGTGTATTTGTAACCTCTGCCGGAGCCTGGATGAGAACCGGCTGCAACATGTTGGTAGACGGAGCCATCTGCTACACGACCACCTTCACCACCCCGTCCCAGACGGCCAGACAGCAGGTCGCCCCAGAGACCAATCACTGCCCCCAGAGCAACGGTGTGTCCACGTGGGTGCAGCATCAGGATCACTGCTACGCCTTCGACATGGGCTTCTACAACTACAGCGTGTACAGCATGGAGAAGGCCCGCAGCATCTGTCAGAGCATGGATGCTCAACTGCTGACCTTAAACTCCAAAGAGGAGAACGACTTTGTGTCAAAGTACATGTCTGATGACCCTCTCATCACCAGCCGAGTGTGGCTCGGCATGGAGCTCGACGCTCAAGGTAAGCCTGTATCCTGGCACGATGGCTCGGCTCTGGCTTACTCTAACTGGAAGTCGGCTGCCTTGGTTACTGGGAAGACGTCCGAGCACTACTGTGCCGTCATGATGGCAGGAGATAAAGGAATCTGGAAAGTTGTCAGCTGCGAGACTAGCCACAGTCGTATCGTCTGCAAAACGGACGCAAAGTCCGGAGGCTCCCCCGTGGCGTTGGGTCTCTTCGTCGTGGTCATCCTCGCTCTCCTTTCAGCCATCGGCTTTATCttctataaaaagaaaagagccCACTTCTCTTCTACCGTCCGCTACAAGAGGACCTTTGATGATTCAGACGCCACCAGTATTATAACCGAAGCTGACTGAGCTTGCTGGAGTAATCGGCCTCAGGGAGTATTAATGTGCCTTGTGTGCATTTTAGTACTTTACAGCAAGAGTAGATGCTgccttccccttttttttttttaaattattaatttatcCTGCTCAAGCCTGCAAACTTCCTAGAATTGTgtgtaaaactgtaaatattgttAGAGAATTGTGAATATCCGCCAACTCAGTGTCTTAATTTTGGTTATTTtagatgtgtgtgttatgaaGAGCCCTGTGTTACACCTAATGTAAATACTGGGACTGATGCTCTCTGGTAAATGTTGATCATTAATATAAGTgggattgtttttgtttgccgtttttgtttttagattgTAAAAAGATTTTGAGTTGATTCGTGTAATTGATGCCTTAAATTGCACTGATGTATGAGTGACTCCAAACTAtcagaaacaaaacacacactttgGTTGTTTACTGTGTATAGCGTTACTCTAGCTATtccagttttatttttcaacttcAGAAGTTTTGATTTCCACATGGTTacaattaataaatacataaaatagaCTTATAAAAGGCCAGTTCACCTGAAGATACAGTAAAACCTGTTTTCTTTGACTTGGGAGTGAGAGATATGCCCTATAACTGTCTGCAAGCAAAAGGAAGAAACTATAGACTGGCTCTTATGTTAATGTTTAATTATATTCTATGAGAAACTTGgctgttaaatttttttatatttataaatttTTCATTAAGCTCCACTTATTGGTCTGATACATTCAAACTTCAGCAAATCATATTAAAACTATCTGCATTGAGATAATGCACTCTGATGAAGAAAATGCATTATGCTGTATGTTTAGTTGCACTGTGCCTTTAAATAAGTAGAAACAAAATGTGATTGATGATCTCACTGACTGTGCCTTTTAACATCATTACTTCAGAAGAAATGGGAGTTTCTAAGCCACTGGATAGGGTTATGTTTAGTGTATTTACTGATTAAGTTGACTTATTAATACCTAATGTATGTTTTAGTTGTAAATCTGAAATTTTAGTCCTGCTGATTAGTTTTCAAAGTGTAGGACACTGTCTTAGCCTGAAAAGGATTCAGACATCTGCTTGTATAATGTCTGTTTATGTACAGTAGATCTGACTTTCCTATGCACGCAACTACTGAGCAAGAACGCACTTTAAATGGAGCTACAGTTCCTTCTATGTTTAAGCACAATGAGGTTCGGAGTTTTTAGGGACGTTCAAATTGCACTGGCGTTTGCTTTGAATGCtttgtaaatatgtttttataacCATGAATGAACCAAAGATGCTCTGAGTCGTTTGAATGTCAAAAGCTTTCCTTTCACTTTGTGGAACTGCCATTGAACGGCTCGTTAATCCATTCATATCAAACTGTAAACCAAATGTTAttgggttgttttgtttttttttaacttccgATCAGCTCAAATCAGGTACAGTATCACTCCAATAAAAATGTCCTGCCTTCAAAGA

Function

GO: NA

KEGG:

id description
K06559 LY75, CD205; lymphocyte antigen 75

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37890 lncRNA upstream 77895 19229955 ~ 19230628 (+) True G28492
TU37873 lncRNA upstream 110296 19196746 ~ 19198227 (+) True G28479
TU37867 lncRNA upstream 115258 19191772 ~ 19193265 (+) True G28474
TU37865 lncRNA upstream 117361 19190118 ~ 19191162 (+) True G28473
TU37857 lncRNA upstream 151710 19156597 ~ 19156813 (+) True G28465
TU38003 lncRNA downstream 121633 19464210 ~ 19464532 (+) True G28571
TU38004 lncRNA downstream 122473 19465050 ~ 19465340 (+) True G28572
TU38005 lncRNA downstream 123735 19466312 ~ 19466524 (+) True G28573
TU38006 lncRNA downstream 124051 19466628 ~ 19468243 (+) True G28574
TU38007 lncRNA downstream 125727 19468304 ~ 19468663 (+) True G28575
XM_039794943.1 mRNA upstream 2611 19277153 ~ 19305912 (+) True pla2r1
XM_039794945.1 mRNA upstream 2611 19280883 ~ 19305912 (+) False pla2r1
XM_039794946.1 mRNA upstream 32718 19263785 ~ 19275805 (+) True itgb6
XM_039794947.1 mRNA upstream 33776 19261291 ~ 19274747 (+) False itgb6
XM_039794220.1 mRNA downstream 31404 19373981 ~ 19444669 (+) False baz2ba
XM_039794216.1 mRNA downstream 31404 19373981 ~ 19444669 (+) True baz2ba
XM_039794227.1 mRNA downstream 31404 19373981 ~ 19444669 (+) False baz2ba
XM_039794217.1 mRNA downstream 31404 19373981 ~ 19444669 (+) False baz2ba
XM_039794226.1 mRNA downstream 31404 19373981 ~ 19444669 (+) False baz2ba
TU37478 other upstream 740043 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1565789 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3822102 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3862131 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 6070704 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 144669 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 155161 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 155516 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 169779 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1368527 20711104 ~ 20761147 (+) True G28770

Expression Profile