RNA id: XM_039794293.1


Basic Information

Item Value
RNA id XM_039794293.1
length 3396
RNA type mRNA
GC content 0.51
exon number 11
gene id marchf7
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19343424 ~ 19358367 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCGGTCAACGTTAAATGTAGCGCCACTGATTTCGCAAAAATATCGAGGCTTCTTAACGCCAGCGTACAAATGACAAGCtaaccagctagctagctagctagcttatagCTAAGTGAGTTTTCAGCCGCTGTAGCCATAGATAAATGACAAGCcaaccagctagctagctagcttatagCTAAGTGAGTTTTCAGCCGCTGTagccataggtatatatctatgcgcTGTAGCAAACAGCTCTGCCGAAAAACAACAGAACCACCCTGTTAGCACATCTGATCAGCGACAAGTGAGGCAATCCATGATGGACTCCAGGTCTCGCAGACTGCCTTTTTGTCTGCCCAGCAGCTCAAGGTCTTCGTACACAACCAGTCCAACAGTCTCCTCCTCATCACTGGGCTCTAGTAGGTTGTACAGTAGGGATACGGTGCTGAATACTGACCGCTTCCCGAGGGCGTCATCAGCTTACAAAGCCGACCTGGACCACCAGAGCTCTCGTCTCCTGAGCTCGTCCAGAGACTACAGCAGCTCCGACAGCCGCTCGCCCAGCTGGAAGTTGCCCTCTTCTCTGACATCGTCCAGCAGATCTTATGATCGCCCGTGGGCTGAATCCTCCCTCAGCAGCAGGAGCAAACTGGTACTGAAGCTGTACTGTCATTTGTCTGTAGCATGCAAAATGCAGTCTTGGTCGAAGACTGATTCTGAAGGGAGGTTGGGGACGCGCTCTGGTTTGTTGAGTGCCAGTGATGATGGTGATTCTAAAAGAGCCAAACTGTCATACAGCAACAGAGGACTGTACCCAAGAACGGCAGGCACCTCAGTTACAGGATCCACTTATTCCAGTACTGGGCTTAGCAGTGGCAGAGGTACAGGTGACACTTATGATTCATCGTGGAGCTCATGCCGTTTACTTTCACGGTCGCCGTCATCTTCCTCCTCGAAGCCGCTGTTGTCCAGGAGAGAGCTAGAGACAAAGAACCAGCCCAGTCTCTCAGGTttgggagacagaaggaggagtacacCTGGATTGGCTTCCTCATTGTATCCGACAGACAGGGTGACGTCCACATATGCACAGGGCGCTCGGCCTAAAGAGAGTGCCTActctccctccttttcttcctcctcctccactgctAGAGAAAGCTCCCTAAATCGCCACCTCTCATCTTCCACCTCCCACCGATCTTCTCCTCCGGTGCGCGACTTCAGCAGCAGAACCCCATCGCGTTTCTTGAACGGCTCATCCACCCTCCACTCATCTCAGGAACAAACGAGAAACCCTCACTCCTCTTTAGGTCTCTCCTCCTCTTACTCCTCGCACACCTCCAGGTACGCCACTCCCCTGCCCAGGCCAGAGGTCGCGCTCCCTTCGAGGCCAGCCCCGGAAGGCGGAGAGACAGAGGGCCGCAGCTCCACTCGCCGCCTTTTGTCCCGTCTCTTTTCGCGGCGCTCCAGCCAAGACTCTTCTAGCGGCTCCTCCAGCGCTCGCTCCCTCGATGATGACAGTCCGTCAACTGGTGGGGAGTCTGTGGACAGTGACGAGGGAGCCAGGATGTCCAGCGTGGAGCCTGACACGAGAGGATCAGAGGCCACGCCGGGTAGCCTCCGGAATCGTAGAGCCGACCTCGCCCCTATCCAGGAAAACAACGATGGCTGTCGTATTGGCCTGGCTCAGTCCAGAACGGCGTTGTCGAGAGAGCCTGGCGTCGGCAGAAGTAatacccccaccaccaccacaagcagcagcagcagcggaggAGGCGGAGGCTACTCCTGGCTTTCCTCCTCCCTCCGTGGCCGCTGCCCCCCCCTGCTCTCTCGCCTCAGAAGACATGCTCGGGACGAGAACGCGCAGTCGTCTGCAGGCTTAGAAGAAGGCTACAGCCGTCCACAACATTTACTGAGAAGGTGGGATGACACTGAGCATAAAGCAACGcaggaagatgaagaagaagaagaagaagaggaggaggaggaggaggaggaggaggaagaagaagaagaagaagaagaagaagatgaaggagCGGTTGGTTTAGAGCCCTTTGGCACAGGTCGTCCGTGGAGACTCGAGGATGAAACGTTACCTGAACTCGAAGATGCCTCGGTTGAATTTTCGCCGCGTCGCCGCGTCGGAGTATTTGAAAACATTTCGGTTTCTATGGGTGCGTTGGGTGGGGTTGAGAGCCAGCTGGATGGCCACAAGGAGAAACCCGTTTCCAGTGTGGATCAAGAGAAGCTGCGCAAGATTAAGGAGAGACTGCTGCTGGAGGATTCTGACGAGGAAGAAGGCGATCTGTGCCGAATCTGCCAGATGGGGGAGGAATCTGCCGCCAACCCCCTGATTCAGCCTTGCCGCTGTACAGGCAGTCTGCAATATGTCCACCAGGACTGCATCAAGAGGTGGCTCCGCTCCAAAATTGGCTCaggcACAAACCTTGAGGCCATCGCAACATGTGAGCTCTGCAAGGAGAAGCTGCGTTTGAACATAGACAACTTTGACATCCAGGAGTTATACAGGACACATGTGCAATCCGAGTACGATGAGTTCATCAGCAGCGGTCTCTATCTGGTGGTGCTGCTGCATTTCTGTGAGCAGAGGTTCTCCGATGTCCTCGGCGCCGTCGATGCAGCTGGGTTATTCAACCTGGTGAGAATTCTTCATGAACACATGGACAATCTTGAAATTCCCCATGGGGAAGGTGACGAGGACACGCGAGACAACAGACCATCTATTGACTTTTCTGACCTGGACGATGATCTCGAAGAGGAGTACTAATTATGTGAAAGGGGTGGATTatgggtaaaaaaataaaaataaaaagaaggtGGGTCACTCGATGCCATATGGTAGCTCACCCAGTTTTCACACATGCTTTTGACATCGTCACGTTCATCAGAAATTGAACGGCAGTGCACACAACGCGTCTCGCCTTTGTTGCAGGTGGcttttgcagatatgcaaactCGAAATGAACTAGTGCGTAAAAATATTTTGGTTGACACAacggtcatttttttttttttcctcatgagAGTGCACTTtattcaattataattaaataaaaatgcaagTCTTTTTAACTGTTACACCACAAGTGCTTTAATGTTTGAATGAAAAGGCAGGAATTGGAAATAGCATAGGACAGTAAGTGTCGATTAGTACTTGTGTGTGATGGTAAGATGGATGCTTTTAGGAGAGAATATACAAAGTGGTGATTATTCCTTTTGGTGTTTCCTCTGACTTTTCccactgagaaagaaaaggaaaaaaaaaaagaacataacCCCATCAACACACGTTCTTTGTTTCAGTGTTTGAAATGCTTTATGTATGTACAAATCTAGTTTCATGCTTTCAATTTTGGAAATAAAGATTAAATgcaaactgc

Function

GO: NA

KEGG:

id description
K10662 MARCH7, AXOT; E3 ubiquitin-protein ligase MARCH7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37963 lncRNA downstream 11909 19330490 ~ 19331515 (-) True G28545
TU37917 lncRNA downstream 49114 19292974 ~ 19294310 (-) True G28516
TU37893 lncRNA downstream 115930 19226132 ~ 19227494 (-) True G28495
TU37856 lncRNA downstream 206814 19135738 ~ 19136610 (-) True G28464
TU37852 lncRNA downstream 220662 19120951 ~ 19122762 (-) True G28460
TU37981 lncRNA upstream 59260 19417412 ~ 19418435 (-) True G28557
TU37983 lncRNA upstream 62396 19420548 ~ 19435215 (-) True G28558
TU37984 lncRNA upstream 76791 19434943 ~ 19435713 (-) False G28558
TU38063 lncRNA upstream 171420 19529572 ~ 19531634 (-) True G28623
TU38073 lncRNA upstream 191975 19550127 ~ 19551890 (-) True G28632
XM_039796053.1 mRNA downstream 110584 19227639 ~ 19232840 (-) True psmd14
XM_039794306.1 mRNA downstream 135781 19182528 ~ 19207643 (-) False fn1b
XM_039794305.1 mRNA downstream 135781 19182528 ~ 19207643 (-) True fn1b
XM_039794971.1 mRNA downstream 217013 19123541 ~ 19126411 (-) False LOC120555836
XM_039794657.1 mRNA downstream 275730 19054091 ~ 19067694 (-) False LOC120555695
XM_039794265.1 mRNA upstream 101019 19459171 ~ 19495413 (-) True LOC120555523
XM_039794272.1 mRNA upstream 142377 19500529 ~ 19508532 (-) False gtf2f2a
XM_039794271.1 mRNA upstream 142377 19500529 ~ 19508532 (-) True gtf2f2a
XM_039796201.1 mRNA upstream 150533 19508685 ~ 19511713 (-) True gpalpp1
XM_039796124.1 mRNA upstream 895561 20253713 ~ 20279186 (-) True LOC120556479
TU37839 other downstream 217048 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 217048 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 281274 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 623405 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 922925 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 2222890 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 3519479 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 3557702 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 3941390 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 4555203 23913355 ~ 23958933 (-) False apba2b

Expression Profile