RNA id: XM_039794333.1


Basic Information

Item Value
RNA id XM_039794333.1
length 6035
RNA type mRNA
GC content 0.45
exon number 13
gene id tgfbrap1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21650745 ~ 21667717 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTTTGCTTCTTGCTTGACGGTTTTGAACGCATCACCTGCAACCAGCAGGAGTGCAGCGCAAATGGGCGGCGTGTTATCCTGGACAAGGAAGACCTAACGCTCCTTGAAGCCGTATTTTCCGCCTGTCGGTGCCGCCCCTAGCGTAATGGCCATATTAATGTCTGACTGTAAATATATGTCGTGGCGGCTGTTTTTGGAGTAGTTCGCCTGTTTGTGGTGATTCGGTCACGCTGGCCTGCCGTCCTGAGCGCTGTGTGTAGCGGTAGTGTAGATGCCTTGGCTGAGATGAGTGTGAAGGCTTTTGAGCTTGTCCCCGCTGTGGAGCGAGATCTCCTCATGGGCGACAAGGCTCGCATCAACATCGAGTGCATTGAATGCTGTGGAAAGCACTTGTACATGGGTACCAATGACTGCTTCATCCACCACTTCCTGCTGGACGAGGTCACTTCCTCCAAAGGAAAACTGAGTTACTCGGCTCAGAAGCTGCTGCACAAATATCTGGGCCTCAAGAAACCAGTTGCTGAGCTGCGTGCTGCCTCCGCTTTGGAGCGTTTGATAGTACTTTGCGATGGAATTGTCTTCCTGGTTGACATGGTGACACTGGAGACCGTGCCCTCGGCGGCAGGGGGAGGAGCCAAGATCAGAGGTGTGACAGCGTTCTGCATTAATGAGAACCCAGTGAACGGTGATCCGTTCTGTGTGGAAATGGGTGTGCTCTCCTCCAAGCGGCGGACGGTGCAGATTTACATGGTGTATGAGGACAGAGTGCAGCTGGTCAAAGAGGTGACCACTCCTGAGCAGCCCTGTGCCGTCAGTGTTGACGGGTACTTCTTGTGCCTGGCCCTGGCTACACAGTACATGATTCTGAACTACAACACAGGAGCCTCCCAAGACCTCTTTCCTTACAACAGTGAAGAGAGGAGACCCATTGTGAAGAGGATCGGCAGGGAGGAGTTCCTCTTAGCAGCACCTGGTGGTCTGGGAATGTTTGCCAATGCAGAAGGGGTATCTCAGCGGGCTCCGGTCAACTGGTCCGAGAGCGTGATtggtgctgctgtgtgttttccGTACGTGGTGGCTTTGGATGAAAGCTTCATCACCATCCACAGCATGTTGGACCAACAGCTAAAACAGACCCTTTCATTCAGGGATGGACACATTCTGCAAGACTTTGAAGGAAGGGTCATTCTGGCTTCCACTAAGGCAGTGTATGTCCTGGTACCTCTGCCGCTGGAGAGACAGATCCAGGACTTACTGGCCAGTCACAGAGTGGAGGAGGCACTCCTCCTCACAGAGGGAGCACAGCAAAATATTCCCAAAGACAAGTACCAGATTTTGCACAAAAGAATTCTCCAGCAAGCAGGTTTCATACAGTTTGGCCAGCTTCAGTTTCTAGAAGCAAAAGAACACTTCAGGAAGGGTCAGCTGGATGTGCGGGAGCTGATATCTCTCTACCCACTGCTGCTGCCAGCTTCCTCTTCATTCACACGCTGCCATCCTCCTCTCCACGAGTTTGCAGATCTCAACCACCTGGCACAGGGCGACCAGGAAAAAGTGCTGCGATGCAAGAAATTCCTTATCAGTTATTTAGGAGAGGTACGAAGCACAGAGGTGGCCAATGGCTGTAAAGAGGACGTGGACACTGCACTGTTAAAGCTGTATGCTGAACAGGATCATGACAGCCTTCTAGATCTGCTAGCTTCTGACAATGCCTGCCAACTAGCAGACAGCCTTCCATGGCTGGAGAAATATCACAAATATTTTGCACTTGGGCTGCTCTATCATTATAATGGTCAGGATTCAGCAGCACTTCAGTTGTGGATTCGAGTGGTAGACGGGGATCTGCAGGACTCCACAAGATCTGACCTTTATGAGTACATCGTGGACTTTCTCTACTCCTGTTCCAACCTGGACCTCGTATGGAAGTATGCAGACTGGGCCTTGCAGAAGGATCCCACCATAGGTGTCCACATTTTTACCAAAAGGCCTGCCAGCAAAGATCTGTCCGAACtgaaccctgatgatgtcatcacttaCCTGGGAAAGCACAGCCAGGCGCTGCTTCTCTACCTGGAGCACCTGGTGCTGGAGAGAAGGACAAAGAAGGAGAAGTTCCACACACACCTGGCCGTGTTGTACCTGGAGAGGGTCTTGTCACTGCTGTTGGAGTCGCCAACAGATGAGCAGAAGCTCTCCAGAGCTAGAGAGAGGCTCCAAGCCCTGCTCAGGGAGTCCAATCTATACCGTGCACAGTTTCTTTTAGGTAAGATGGAGGACTGTGAACAACTGCTGCTAGAGCGTGCAACACTACATGGAAAACTGGAGGAGCATGATAAAGCACTGCATATCTTGGTTCACAAGCTGAGAGACTTCCCATCTGCTGAGGCCTTCTGTACATGGGCCTCTTCCTGTCGGGATTCTGCGTACCGACAGCAGCTATTTCACCTGCTCTTGGGGGTGTATCTAGACACAAACCTTTCTGGAAAACCCCAGACTGCAGCAGGAGGTGGAGACCTGGAGATGGCGGCAGTGGACCTACTAAATCGGCACGGCGAGGTGTTTGATGCAGTCCGTGTCCTGCGCATGCTCCCCGAGGGCTGGTCACTGCAGCTGCTGCGGCCCTTTCTGGGTCGAGCCATCCGGGCCAGTATGCATGCCTGCCGCACCTCCCAGATTGCTCTGGGGCTAGCCCACTCTGAAAACCTTCAACTGCTGCATGACCGGTTGAAAGACCGGAAGAAACCAGTCTTTGTGTCTGAAAAGAAAGGATGCCACCTGTGCCACAACACCTTCAGTGAGCCTGACGTGGTGTGTCTGCCGGGTGGAGTGCCTGTCCATACTCACTGTGTCGCCCAGAGAGTGAGAGACTCTCCCACAAAGAGACGGTTAACTAATAGCAGTAACCACACGTGAGACTTGACACTTGAAGCTATGGGGATCAAAGGCAACCAAACAAAAGCAGGACATGCTGAGGACTGTGGGGATAACAAAAAGCACACAAGACCCATTGCCATAGTAGAGTCTGCTATGGAGTTGAtgagaaacacaaagaaagctgtGCGAGTGTGTACGTGTGGGAGAGCGCACGGGAGAAACGGATGATTTCAtctacagtgtatatatatattcctgtgACGCAATTATACCACACCGTCAGACAGCaagttttgctttttttttaacaagtaaGAAACAACAGCTGATTCATTCACCCGACCCTTTAATCCATTTAAACCGAGAATTCATTCAAGACAGGCGCCTGTGCTTATCGGTGGGTTCAGTGCTGAACCGGTCATCGTCTTGGCTTGAACGGTTTTAAACCTGAATTTGAGAAACTGCTTGAACTCCAGAACACACAATATTTGAATAAGCATGCACAATATTACCACTTTTACAGTTGCTGGTCTAATCACCTCCGTATGGATATTGTATTAATATTGTCCTAACTTGCACATTGCATTGTTAGGTTTTAATGTGAAATACTACAAAGACTTATCAGTACGTGGAAACGGAGTCTTTTtatgtctgtattttactctCTGGGATCTAGTCTCACTGCTGCTTTATTTCCCCTCAGCCATAAAGGCACTGGATGTTTTATTCACAGTAGTTCAGGTCAACCGTTTGATCCCAAACTATTAGTTACGATGGTTAGTTATTCAGTGTCGTCTGTGGATCAACAACAGCGTAAATACACTACATGAAATCTTACATTGCTTTACTAATCATGGGTAACTGGGGATTTAATACTCAAAGTGCATgatggaccaatcaaattgacCCTCTAAAACCTGCataaatcaaatattttttactGATAATGCCTGTTGGCACATTATGAAGAGTATCATTAAATCATGTGAAATCAAGCCCCATAAATTTTGTCTTGTTTTGAgtaacaaatgaaataaatcgaGATAGATCTTCACCGCTCGCCTGCTCTCATAGATCCATTTTTTTGGCTAGGGAACAGACAGTGATACTGATAAAGTTAATTCAAATCCTATCAACGCAAAACACATGTCAGTCAGTGGCAAACTTAAATAATATTTAGAAGGGCCACATCCAGATTTCTATTCTTAAAATGAGATTTGACGCATGAAGTCTTCGGGTGGTAATTGGTTCCAAACCTGAGATAATTGTAATTCATCATCCTCATTACTGTGGGTTATTACGTTATTTTTTTCACAGCTTACATATTGTGATGTAAGAGAtgtgttcatttttatttaagctGTAAAAAAGTATTATGACCACAAAATGGCAGTAATTTGTaaaatgtttacaacaaatTAAATGAACTACAGGTTTAACATGATGGAAATTACTTTATGGTATTCTTTATCATTCTACTAAATGCCCACACTATGCTTTTTAAATAatggagatagatagatagatatacacatacacacacacacacttataaagCTGTTTGGAACAAATCCTCCAAACCTGTTCCGTATTTTCGATACCACACCACAACCCGTTAACACACACCCTGGTCTTGGTTAAAAGGAAATGCTTTGACAGTCAACTGTGCTGTTAAAGAATCTTCAGAATGATGAAAATGTACAATGGTTGAGGGGTGACGTGAAAGAGGATGAATTTCTACCACATTCCTAACAAAAGTAACAAATTATCAAAGGAAACGGCCGTCTCATCATGCATGATATTGCACTGCACATAACTCCTAAAATTTTTCTTAATGTTGGGAAATAAAGAGAACCCAAAACCTGTATCATCCACAGCTCTGATGGCCCAAGAACAACATGTAGCTTGATTGTGGATACATCTGTTCTCATAACTGCTGGAGTTATGGCTTTAACCTTTTCACCATGACACCCCTCTTAATaactgaaacaaacaaaatgatatCACGAAGACGTCCCATAATTCTTTACGGGTTTGTCATCACAGAACGCCACTTTATCCATTCAGTCTTTTCTGAATGACGTGTACGTGTTGGATAACAATAAAGGGCAGTTTTGACCTCATAAGTGAttctcacagacagacataacTAATGACAGGTgcataatgtgtttgtgttgctaaATCGTgtgaacagtaaaaaaaaaaaaaaaaatcagggaaTATTCCTAAATGTCTGCCCCGGAGATGAAGCTTTgctgaaaagatgtttttgtcaaACTATCTCGCTTTGAAAAATTGTTACTTGAGGTGGCAGCGTGAATTTCATAACGGAGCAATGAGAGAAAACCCTGACAAAAGCTGCTGTACACAAAATACACTCTAAAGTTGAGTCATCGTGTACCTCAGTGTTTTCGTAACACTTGTCTCTCGGCCTAGAGACGTGCCACTGTCTGTCTCTCGCTGAGCGTGCCCATTCAGATTTacaggtataaaaaaaaaaaaaaagaagctgtttaCTGTCCTAACTCTCTAAGATCAGAAAAGGTGTAAACGAATCCTAACTCTTTACACACTACAGTCTGTACAATATATTCATTCAATTTAGTtctgaaaaagagaaaattggTCTGTAGCGTTGCCAGTTTGTAATGTAATAACCCAACAGAAGCAAAAACCAAAGGAACAGCGAGGTGGGTCTCCTCAGTTTAATTGAACTCCCTCCCAATTGTCCGACATTCTTTAACTCCTCTGTGCTCATGCTGTGCGTTCTGCTCGTTTCTCTGGTGCCTGTGCTGTTGATGCTATAGCCTTCTGTAATTGCAACACATTTCTGTGAGGGAACTTTTGTGCGCACATGGGACTATTTTTCTAACATGGAGATCTGGATATTGTAGATTCTGTAGGCTTGACTCAGCTTATCCACGGCATCTTTCTGTCTGAACAGTTCAAGTGTAGCTTGCTTAAAAGGCCTCATAACCATCACttcaaataatgaaaaaaaaaaaaaatactattgtattttataaatatatgtatttactGGTATGTATATATTGCATTTGTACTTGTTTGAGCTTTCTAAATCAATGCCAATGTGGATGGAGAGTACAAACTGTAAATCCGTCCCATTTTAATAAACATGAAACTGTATATCAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0050790 regulation of catalytic activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38378 lncRNA upstream 12664 21636531 ~ 21638081 (+) True G28880
TU38371 lncRNA upstream 34587 21615716 ~ 21616158 (+) True G28875
TU38368 lncRNA upstream 46839 21601596 ~ 21603906 (+) False dcun1d2b
TU38500 lncRNA downstream 50771 21718488 ~ 21718824 (+) True G28976
TU38502 lncRNA downstream 198574 21866291 ~ 21868095 (+) False gpc5a
TU38517 lncRNA downstream 218872 21886589 ~ 21888808 (+) False G28990
TU38519 lncRNA downstream 218965 21886682 ~ 21889549 (+) True G28990
TU38533 lncRNA downstream 416228 22083945 ~ 22084401 (+) True G29004
XM_039794545.1 mRNA upstream 24228 21614701 ~ 21626517 (+) True grtp1a
XM_039794538.1 mRNA upstream 37458 21605117 ~ 21613287 (+) True adprhl1
XM_039794539.1 mRNA upstream 41360 21605134 ~ 21609385 (+) False adprhl1
XM_039794553.1 mRNA upstream 46877 21597558 ~ 21603868 (+) False dcun1d2b
XM_039795434.1 mRNA downstream 801 21668518 ~ 21674299 (+) True mrpl16
XM_039795433.1 mRNA downstream 6707 21674424 ~ 21681765 (+) True LOC120556067
XM_039794088.1 mRNA downstream 32086 21699803 ~ 21709381 (+) False LOC120555410
XM_039794087.1 mRNA downstream 32087 21699804 ~ 21709381 (+) True LOC120555410
XM_039795000.1 mRNA downstream 52317 21720034 ~ 21770452 (+) False gpc5a
TU38307 other upstream 247295 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 889598 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2130527 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2152521 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2152872 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 879484 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 1097002 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 1200003 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 1324420 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 1469015 23136732 ~ 23137027 (+) True G29292

Expression Profile