RNA id: TCONS_00073500


Basic Information

Item Value
RNA id TCONS_00073500
length 4494
RNA type mRNA
GC content 0.50
exon number 39
gene id XLOC_037352
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 39026311 ~ 39139722 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCTTTACAAACACAAACTGGGCAGCACatttaactttcctcagtcaCGCTGAAGCAACAGCCAAaagaggattctgcttggtcttgaagccttcattcatttattcTGTCACATTGCATCTAAAGAATacatctgttgcttttaaattcATTCTACTATACCCTGAAGCTCTTACAGACCCCAGTTACAGGGGGCAGATCCTGACCCTCACCTACCCTATCGTGGGAAACTATGGTGTCCCCAATACACAGGAGCTGGATGAGCTGGGACTCAAGAAAAATGTGGAGTCTGATCGGATTCAGGTGTCAGGATTGCTGGTTCAGGATTATAGTGCTGAGTACAGCCACTGGAACTCTGTGAAATCCTTAGCACAGTGGCTTCAAGAGGAGAAGGTGCCAGCACTTTTTGGCATAGATACCAGGATGCTGACAAAGATCATTAGAGATAAGGGTACTGTTTTGGGGAAGATTGAATTTGATGGACAGCCAGTGGAGATCACAGACCCAAACCAGAGAAATCTTGTTTCTGAGGTCTCAACCAAGGATATTCAAGTGTTTGGGAAAGGTAACCCCGTCAAAGTGGTTGCTGTTGACTGTGGAATCAAACACAACATTATAAGACTACTCGTCAAGCGTGGAGCAGAGGTCCATTTAGTGCCGTGGGACCAAGACCTGATGAGTTTGGAGTATGATGGTCTCTTCATTTCCAATGGTCCAGGAGATCCTTCACTGGCAAAGACCCTGATTCAAAATGTTCGCAAGGTACTGGAAAGCGACCGTCCACAGCCAGTTTTTGGTATTTGTATGGGAAATCAAATTACAGCCCTTGCGGCTGGTGCTCAGTCTTATAAACTACCAATGGGAAACAGGGGCCAAAACCAGCCTGTTGTCAATGTGATGACAGGCCAGGCTTTCATCACAGCTCAGAATCATGGGTATGGCATAGACAGCGAGTCTCTTCCTCCAGGCTGGAGTCCTCTCTTCATCAATGCAAATGATGGAACCAATGAGGGTATTATGCATAACACCAAGCCTGTGTTCACAGCACAGTTCCACCCTGAGGCCAAGGGAGGACCCACAGACACAGAGTTCCTGTTTGATGCTTTCATCTCTCTGATAAGGAAGGGGAGGGAGGGGAGCATCGCATCCGTGATGCCTAAGAAACCTGCTGTTCCTCCCAGAATCCAGGTATCCAAAGTACTGGTCTTGGGATCTGGAGGCCTGTCCATTGGTCAGGCTGGAGAGTTTGACTACTCTGGATCTCAGGCTGTCAAAGCTATGAGGGAGGAAAACCTGCAAACGGTGCTGATTAACCCTAACATTGCCTCAGTGCAGACTAATGAGGTTGGCACCAAGCAAGCAGACTCCGTGTACTTTCTGCCTGTCACTCCAGAGTTTGTGACACAGGTGATCAGTGTAGAGCGACCCGACGGTATCCTGCTCTCCATGGGAGGACAGACAGCTCTCAACTGCGGCGTGGAGCTCTTTCAGAGTGGCGTCCTGGAGAAGTATGGAGTGAAGGTTTTGGGCACACCTGTGGAGTCCATCATGGCCACTGAGGACAGGCAGCTCTTTTCAGACAAACTAATGGAAATCAATGAAAAGATTGCACCCAGTTTCGCTGTTAAAACGGTGGCAGATGCGTTGAAGGCAGCAGATGAGATTGGCTATCCTGTCATGCTGAGATCAGCTTATGCCCTGGGTGGGCTTGGCTCCGGCCTGTGTGCTAATAAAGAGAAGCTAGAGGACACCGCTCACAAGGCCTTAGCTATGAGCAGCCAGATCCTGGTGGAAAAGTCTCTGCTGGGCTGGAAGGAAGTGGAATATGAAGTGGTGAGAGATATTGCTGATAACTGTGTCACAGTCTGCAATATGGAGAACTTTGACCCACTGGGCATCCACACAGGTGACTCCATTGTGGTTGCACCGAGTCAGACTCTGTCCAATGAGGAGTACCACATGCTGAGAGAGACCGCTATTAAGGTGGTGCGTCATCTGGGTATTGTGGGAGAGTGTAATATCCAGTACGCTCTGCACCCATCCTCCCTGGAGTACTGTATCATTGAGGTCAATGCTCGCCTTTCCAGAAGCTCAGCGCTGGCGTCCAAAGCCACAGGCTACCCATTAGCATTCGTAGCTGCTAAACTAGCACTGGGCATCCCTCTGCCAGAGATAAAGAACGCTGTTTCGGAGCAGACCACTGCCTGCTTTGAGCCCAGTTTGGATTACATTGTCACCAAAATTCCTCGCTGGGATCTGGACCGCTTCCACGGAATGTCTCGAGAGATCGGCAGCGCCATGAAGAGTGTTGGAGAGGTCATGGCAGTCGGCCGAAGCTTCGAGGAGAGCATCCAGAAGGCTTTGCGGATGTGCCATCCCTCAGTGGACGGCTTTGTACCACGTCTGCCTCTGAAAAAAGCCTGGGCAGAGCAGCAGGACCTGCAGCGAGAGCTTTCCATGCCTTCAAGTACTCGTATTTTCTCTCTTGCTCAGGCCCTACACAGTGGTGTGACCGTTGATCAGATCCATGACCTGACTGCCATAGACAAGTGGTTCCTGCACAAACTCAAGCACATTACTGAGATGGAGCAGCGTCTGGGTCAGTATAAAAGTGCCACAGTGCCGAGAGATCTACTACTGAAGGCCAAGATGGATGGTTTCTCAGACCGTCAGGTTGGTCAGGCAATGGACATCTCAGAGGGAGAAGCTCGAGTGCTGAGGCTAAACCAGAACATCCGACCTTGGGTCAAACAGATCGATACACTTGCTGCTGAATACCCTGCAGCCACCAACTATTTATATTGCACTTACCATGGTCAGGAGCATGATTTGGATTTTAAGGACCATGGCACCATGGTTGTTGGTTGCGGTCCATATCACATCGGCAGCAGTGTGGAGTTTGACTGGTGTGCCGTGTCAAGCATTCGTGCCCTCAGACAGATGGGCAAGCGTACAGTGGTGGTGAACCATAACCCGGAGACGGTCAGTACGGACTTTGATGAGTGTGACCGTCTGTACTTTGAGGAATTAACCCTGGAGCGCATCCTGGACATCACACAGCAGGAGGGCTGCACCGGCTGTATTGTATCTGTGGGTGGGCAGATCCCCAATAATCTGGCCATGCCCCTGCACCTGAACGGGGTGAAGATTCTAGGAACTAACCCTGCTCAAATTGATCGTGCTGAAGAAAGATCTGTATTCTCTTCCATACTGGATGATCTGGGTGTTGGCCAGGCACCGTGGAGGGCTCTCAGCTCACTGGAAGATGCGGTTTCGTTTGCCAGTAATGTGGGCTACCCTTGCCTCCTGAGGCCATCCTACGTCCTAAGTGGCTCAGCTATGAATGTGGTTTACGGTGAGGATGAGATGAAACGTTTCCTGGAGGAAGCCACACAGGTTTCACAGGATCATCCTGTGGTCATCACCAAATTCATCCGAGGTGCCAGAGAGGTGGAGGTTGATGCGGTGGCCAGGATGGGCAAGGTTCTGGCTCATGCTATCACAGAGCATGTGGAGGATGCAGGAGTGCACTCAGGAGACGCCACACTCATGCTGCCCACCCAGACCATCAGCCAGGGGGCTCTGGAGAAGGTGAAGACTGCGACTCAGAAAATTGCAAAGGCGTTTGAGATTTCGGGGCCATTTAACACTCAATTTTTAGTAAAAGGCAATGATGTAATGGTGATCGAGTGTAACCTGCGCGCCTCTCGATCCTTTCCTTTCGTTTCTAAAACTATCGGTGTGGACTTCATTGATGTGGCCACCAGGGTGATGGTGGGGGAGCGGATGGATGAGTCTCGTCTGCCCTCTCTCGAAAACCCAATCATTCCAGTGGATTTTGTTGGCATTAAGGCTCCAATGTTTTCATGGCCTCGGCTGAGAGAAGCAGACCCTGTCCTGCGCTGCGAGATGGCCTCTACTGGAGAGGTGGCTTGCTTTGGACCGAACATATACTCTGCCTTCCTGAAGGCCATGCTTTCTACAGGATTCAAGCTTCCCCAGAAGGGGATTCTCATTGGGATACAACATTCATTCAGGCCCAACTTTCTGTCCACTGCTCATCAGCTTCATGAGGAGGGCTTTAAGcTGTATGCCACAGAGGGAACATCAGCTTGGCTCAATGCTAATGATGTTCCAACAATCCCGGTTGCCTGGCCGAGCGTTGAAACCAATACCACACACTTACCCAGCATCAGCAGACTTATCAGTGAAGGACACATTGACCTTGTGGTCAATTTGCCAAATAACAACAGCAAGTTCCTCAAAGACAACTTCCAGATCCGTAGAATGGCAGTGGATTACGGAGTACCTCTTATCACAAACTTCCAGGTGTTTTTCTCTTTTCTACAGGTAGTAAAGCTGTTTGCAGAAGCTATCAGGTATTCAAGTGAGTTAGACGCCACCAGCCTGTTCCACTACCGCCAACGCGAGCCCAGACTAAAAGCTAATATTATGAGCAAACAGCCCACCAGAGTGTTGCACATTATCTAG

Function

GO:

id name namespace
GO:0000050 urea cycle biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0097272 ammonium homeostasis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004087 carbamoyl-phosphate synthase (ammonia) activity molecular_function
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity molecular_function

KEGG:

id description
ko00910 Nitrogen metabolism
ko00250 Alanine, aspartate and glutamate metabolism
ko00220 Arginine biosynthesis
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-081105-17 Enables carbamoyl-phosphate synthase (ammonia) activity. Acts upstream of or within ammonium homeostasis and urea cycle. Predicted to be active in cytoplasm. Is expressed in ball; brain; liver; and muscle. Human ortholog(s) of this gene implicated in carbamoyl phosphate synthetase I deficiency disease; persistent fetal circulation syndrome; and vascular disease. Orthologous to human CPS1 (carbamoyl-phosphate synthase 1).

Ensembl:

ensembl_id ENSDART00000188203

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073476 lncRNA upstream 407980 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 555504 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073463 lncRNA upstream 605275 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 608200 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073455 lncRNA upstream 717741 38307686 ~ 38308570 (+) True XLOC_037333
TCONS_00074931 lncRNA downstream 723531 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073518 lncRNA downstream 1940372 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA downstream 1940372 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073527 lncRNA downstream 2098519 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00075179 lncRNA downstream 2098519 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073492 mRNA upstream 33278 38962017 ~ 38993033 (+) False XLOC_037350
TCONS_00073496 mRNA upstream 34945 38983895 ~ 38991366 (+) True XLOC_037350
TCONS_00073494 mRNA upstream 35311 38967248 ~ 38991000 (+) False XLOC_037350
TCONS_00073493 mRNA upstream 36838 38962398 ~ 38989473 (+) False XLOC_037350
TCONS_00073495 mRNA upstream 51283 38967998 ~ 38975028 (+) False XLOC_037350
TCONS_00073506 mRNA downstream 1406955 40546677 ~ 40617382 (+) True XLOC_037356
TCONS_00073507 mRNA downstream 1685343 40825065 ~ 40825989 (+) True XLOC_037357
TCONS_00073508 mRNA downstream 1734472 40874194 ~ 40924943 (+) True XLOC_037358
TCONS_00073511 mRNA downstream 1799614 40939336 ~ 40943137 (+) True XLOC_037360
TCONS_00073512 mRNA downstream 1885251 41024973 ~ 41034174 (+) False XLOC_037361
TCONS_00073498 other upstream 11713 39010445 ~ 39014598 (+) False XLOC_037351
TCONS_00073499 other upstream 12876 39011226 ~ 39013435 (+) True XLOC_037351
TCONS_00073497 other upstream 14927 39010432 ~ 39011384 (+) False XLOC_037351
TCONS_00073489 other upstream 239267 38786928 ~ 38787044 (+) True XLOC_037349
TCONS_00073487 other upstream 281537 38737612 ~ 38744774 (+) False XLOC_037348
TCONS_00073504 other downstream 997775 40137497 ~ 40137612 (+) True XLOC_037354
TCONS_00073505 other downstream 1138425 40278147 ~ 40278263 (+) True XLOC_037355
TCONS_00073509 other downstream 1755927 40895649 ~ 40896812 (+) False XLOC_037359
TCONS_00073510 other downstream 1756049 40895771 ~ 40897183 (+) True XLOC_037359
TCONS_00073529 other downstream 2109735 41249457 ~ 41266843 (+) True XLOC_037367

Expression Profile

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