RNA id: XM_039794373.1


Basic Information

Item Value
RNA id XM_039794373.1
length 4466
RNA type mRNA
GC content 0.44
exon number 22
gene id LOC120555582
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29522758 ~ 29538735 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagagagagaggcagcaggggatggacacacatgcacaggcaGGGATGTGAAGAGGGAGCTCTCACACACCTCTCCTGATTCAGCGGAACAGATGTATTCGTCACCTCTCCCGGCAACCTCACGTAGCGAGCTGGTTGCAAAACACAAGACAATCCCAAACCCAGCAGCACCTGCCCCATCCGCCAacccatctgtctgtctgcgcaGATTAACGGCTCTGTTACAACTCTGACTGCGTGCTTACTGGCGTCTACTGCGTCTCAGAGACGGAGGGGGGGACACAACGTCCAGAGAGACGAGCGGCGAATGTGAATGATGGGAAAACTAAATAGCGACGACTGCATTGAGCATAGGCCAATGGATAAACTGCGGGACAAATAGataaccaaaagaaaaaaagctttgtttcTGCATGTCTACCTTAGGACCCCTCTGCAGGGAGATGTTCATCATTATGGGATAGATGCACAGGTCTGCCCGTTGCCATGGATACCAGCACGCGAAAATTCACAGTGCGGAGATGGTTTTCCATCTACCTGAAGAACAAGGCGGCAAGGAACAAGAACAACACTGGCTTCTGTCAACTAGAGGATGACAGTATACTTAAGGAGATTGACATCAGCCACCATGTTAAGGAGGGTTGTGAGAAAGCAGACCCCTCTCAGTTCCAGCTGCTTAAAGTGCTGGGACAGGGCTCCTATGGAAAGGTGTTTCTGGTGAGAAAGATTAGAGGAGTGGACAGAGGACAGCTGTATGCCATGAAGGTCCTGAAGAAAGCCACACTGAAAGTTCGGGATCGCGTGCGATCTAAAATGGAAAGAGACATTCTGGCAGAAGTGAACCATCCATTTATAGTTAAACTGCACTATGccttcCAGACTGAAGGAAAGCTCTATCTGATCCTAGACTTCCTCCGAGGAGGAGACCTTTTCACTCGTCTATCAAAGGAGGTAATGTTTACAGAAGAGGATGTGAAGTTTTACCTTGCAGAGTTGGCGCTGGCCTTGGACCATCTACACAGTCTGGGGATCATCTACAGGGATCTCAAACCTGAAAATATTCTTCTGGATGAAGAAGGACACATTAAAATAACTGACTTTGGATTGAGTAAGGAGGCCATCGATCATGATAAAAGAGCATATTCCTTCTGTGGAACAATAGAGTACATGGCTCCAGAGGTCGTGAACAGGAGAGGGCATACACAAAGTGCTGACTGGTGGTCATTTGGGGTACTTATGTTTGAGATGTTGACAGGATCATTACCATTCCAAGGAAAAGATCGGAAGGAAACAATGGCACTTATACTAAAGGCTAAGCTGGGAATGCCACAGTTCCTCAGTCCTGAAGTGCAGAGTTTATTAAGAGCACTCTTCAAGAGGAACCCTGTTAATCGTCTAGGTGCAGGACCTGATGGAGTGGAGGAAATAAAAAGACATCGCTTCTTTGCATCGATAGACTGGAATAAGTTGTACAGGAGGGAAATGAGGCCTCCATTCAAACCAACAGTTGGAAGACCTGAAGACACTTTCCATTTTGACCCTGAGTTCACCTCCAGAACACCCACTGATTCTCCCGGCATCCCTCCCAGCGCAAACACACACCAGCTGTTTCGTGGCTTCAGCTTTGTTGCAACAAATCAAAGTCAGGAGCCTAGTGTTGCTACAGTAGCGCCTTCTCGTCAGGAGGTGAACAGCATCAACCCCATAGCAAAGCATCTCCAAGGTGATGTGGCCTTCAGTGATGTTTATGAGCTGAAGGAGGAAGTTGAACAGACATCGACTTCTGTCTGCAGAAGATGTCTGCACAGAGTTACTGCTGTGGAGTATTCAGTGAAGATCATTGACAAAGCGAGGAAAGATCCATCAGAGGAGATTGAGATTCTGTTAAGATACGGACAGCATCCAAATATAATTACTCTGAAGGATGTGTTTGATGACGGCCAGTGTGTGTCACTGGTTCAGGATTTACTGAGAGGAGACGAGCTGCTGGACAGAGCTCTGACAGTGCCAAATTTTACAGAGAGAGATGCATCAGACATCATCTGCACACTGACCAAGACTGTGGAATATTTACACTCACAGGGGGTCGTTCATCGAGACCTGAAGCCTAGTAACATTCGTTATTGTGATGACAGTggactcccagaatgcatcaggatatgtgattttggttttgcCAAACAGCTCAGGGCTGAGAATGGCTTATTGATGACCCCCTGTTACACAGCTACATTCATGGCTCCTGAGgttctGAAGAAGCAGGGTTATGACGCAGCCTGTGACATCTGGAGCCTGGGGATCCTGCTCTACACCATGATAGCTGGTTTCAGTCCATTTGCCAGCAGTACTGAGGAAACAGCAGATGAAATTCTGGCTCAAATCGGCAGCGGGAAATTCATTATCACAGGAGGGAACTGGGACCTGGTATCAGACGTTGCTAAGGACATTGTGACCAAGATGCTCCATGTGGACCCTCACCAGCGCCTGACTGCACCCCAGGTTCTTCGTCACCCCTGGATTGTAGACAGAGACCAGCTCTCTGACAGAGCTCTCACCAGACAAGATGCTCTTACTGTCAAGGGGGCACTGTCTGCCACCTACTCTGCTCTGAAGCGCTGTGCTCCTGCTCCACTCTTGGAGCCTGTTCAGTCCTCCAGCCTGGCTCAGCGGCGAGGAATGAAGAAACAGGGGAGTATCAAAGTTAATTCACACCCTAAAGAAAAGGACTAGCCTCAACACTCTGAATGCAACTCAAGGAATCGAATCCACATAATTAGAAGACGTAGAGCTCTTTTGAAAAGTATATTGTTACAAAGTGTTAGTAGACCTACAAACCGAATGTAgcaggtatttaaaaaaatcctaTCGCAAAAGGACTACGCCTAATTAACTGTAACAATGAAGCAGTCCACTAGCACTTATTATGCATTAGGACTAGCTTCATTTCACtcaattcaaagtgtaaattgtaacccttttctttttttaaactaattgaAGTGATCTGCAGCTGATGTTCAAAGGGAACGCATGGATGTTTATTTCTTTTGGGTCATACATGTCAGAATACAATTAGTGCTGTAGTGCaataatatacacagaaaaatTGTCCACATCTACAGAAGCTCCAGCAGCTGAAAGTGGGACGAGTAGTCTGCTCACCAAAATCAGAAATAGCTGTATTCAGTGCCACAAACAACATGCCAAGTAGTTGATTTACTTTAGTTTTTTATATTTAGCACATACATGTATTTCACCAGGAGTTCATGCCATACATTGATACAGTCTTCCACAGTCATAGCTCTAATAATTAGAGTAACGTGTTTGAATGAGGTACTCTCACATTTTTTCTTCAATCGATCCTCTGAATTCTACAGAGTTATGcatgttaaaatgtaaatgtcctACCAAAGGGAATTTGAACAATTGACAATGCCATTGAAGTCTTATTGTTCCTACTTTGCTTAACAATTTTACTGTATGAATTGTTGTCTTCCATAAATACAGCCTTTGACTATCGTGAAATGTATTGTTAAATGTATCACTACTGTACTTCCCAAATCAGATGGAACAGTGAGCTATGAAGGTATTTATGTTGAACGTAGTATGTTGTGGTTTTTCATAACATATTCTAAATGTTATTTGGCTTAAGAGAAGTCCTGGAGAGCATCATGTTTCTCTTTTGGTAAATGTCAATCTGCAGCCTATACTACTTTGTATTATTAACTCAGCATTCAGTGTGATAGATCATCTTTCAATGTGTGCTTGAGTGTGTCAAGTAGCTGCCAGTAGACTACTGTTTGCTGTTAGTGTCTGAAAGCCAAAgtgtttgagaaccactgtgtCAGAGGATTCTATATACTGTGTATTGCTGCTGCCCTGATTGCATCTAATACGTTGTACATTCACAAATACGAGGTAAGACTGAACAGGGTGGTTTGCAGACGTGAGTAGCACACTTTGTGTTGTAAAATTTACCAGTAGGAATGTAGATTATAATGCTCCACAATTAATACACATACTTATTGGTCAGAGGTACTCACATATTGTGACGGGAAACCAATAAGCACTGTAGCAGAGATCCCGTTATTTTGTACATGTTTGCTGATACACCGGCTGTATGTGTTATGACGCATTGCACAACTGTGAGAGGTGGAGCTGGGACTGATGCAACTATGAGTATGCAGATAAGGTTGTAGATATTGTGTTGTACAACCACAAATTTGAGGTAAAGCTGTAAATATTGTTTACTAATTTAGATTGTACATATAGTGTTGTACAACTATCGGCAAGCAGTAAGCCTGTATATATTGTGTTTGCAGATATATAGAGATTGTACATATTATATTGTGTTGTGCATCCATTGCTCAGAGTGTACATACTGTCTATATACCTGGCCAATCACTGAAATTATTGGCTAGGATGCCAAAGTTTTACAAATAAAGGAAAAGAACACAAACAATA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41003 lncRNA downstream 126075 29386757 ~ 29396683 (-) False G30852
TU41002 lncRNA downstream 126075 29389963 ~ 29396683 (-) True G30852
TU41004 lncRNA downstream 132440 29386757 ~ 29390318 (-) False G30852
TU40941 lncRNA downstream 208112 29313958 ~ 29314646 (-) False prrg4
TU41054 lncRNA upstream 76705 29615440 ~ 29616375 (-) True G30898
TU41058 lncRNA upstream 78631 29617366 ~ 29617855 (-) False LOC120556497
TU41061 lncRNA upstream 122933 29661668 ~ 29662088 (-) True G30905
TU41059 lncRNA upstream 131073 29669808 ~ 29670355 (-) False LOC120556497
TU41149 lncRNA upstream 623745 30162480 ~ 30288433 (-) False G30969
XM_039794467.1 mRNA downstream 61523 29402035 ~ 29461235 (-) True elp4
XM_039794529.1 mRNA downstream 147158 29352248 ~ 29375600 (-) False rcn1
XM_039794528.1 mRNA downstream 163813 29352250 ~ 29358945 (-) True rcn1
XM_039794524.1 mRNA downstream 196294 29318089 ~ 29326464 (-) True eif3m
XM_039796141.1 mRNA downstream 208049 29311192 ~ 29314709 (-) True prrg4
XM_039794374.1 mRNA upstream 2872 29541607 ~ 29552473 (-) True rnaset2
XM_039796142.1 mRNA upstream 78585 29617320 ~ 29965747 (-) True LOC120556497
XM_039795576.1 mRNA upstream 628083 30166818 ~ 30178614 (-) True ddx21
XM_039794962.1 mRNA upstream 814693 30353428 ~ 30361232 (-) True tacr2
XM_039795713.1 mRNA upstream 903512 30442247 ~ 30446660 (-) True LOC120556252
XR_005638738.1 other downstream 61522 29402754 ~ 29461236 (-) False elp4
TU40901 other downstream 253594 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 675793 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 675793 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 675793 28775975 ~ 28846965 (-) False mafa
TU41279 other upstream 992016 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3352764 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 3803512 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 3899728 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 4268201 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile