RNA id: XR_005638738.1


Basic Information

Item Value
RNA id XR_005638738.1
length 1749
RNA type transcript
GC content 0.51
exon number 11
gene id elp4
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 29402035 ~ 29461236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCCACGGGGCCCCGCAACAATCGCTGCGCTCACTGGTCGAGGACAACCAAAGTGTTCTTTGATTGGACAACGCGCTCCAAAACATTAACAGGCGTCACCGAGTTACAAGCAGTATGGCGGCCCCCATGAGCAGTGTGGCTAAACCCTCAGCTGAACGTTCACCGTTCAATACTACGAGTTTTCAGAAGAAAACGAGGAGCAAGTTAATCTCCATACCTGGTACCAGACCCTCGGTTCAAAATGGACAACTCTTAGTTTCGACCGGTGTCACGTCACTCGACTATCtgctcgGTGGTGGGTTAGCAGTTGGAACAGTACTTCTCATAGaGGAGGACCGATATGATAGCTACTCTCGTATGATCTTAAAGTACTTCCTGGCAGAAGGAGTGGTGTGTCGACATGAACTTTTTGTGGCGGCGGCTCAAGATAACCCAGATGACATCTTACAGgAACTCCCGGCTCCCATCTTGGATGATGTTGCTATCCATAAACCAGTGGAGCAGCCCAGGCTGTCTTGTGAAGCTCAGAACAGTTTGGATGCCATGAAGATTGCCTGGCGTTATCAGAATCTTCCAAAAGTACAGAGTGCCCTGGCATCCTCATCCCGGTTCGGGCATTACTATGACGTCTCTAAGACTATGGAGCCAGAAATTCGCCAGGCAGCCAAGTGCCATCGCTTCTACCCTACAGAACATCCCACCCAGTCATCACCCACACACAGTACTATGCCCGAGTCCTATTCTGCGTTGCTGAAGTCACTTCAAGAGGTCATACACAGGGAGGGCTTTGATGTAGCAGCCCCTATGTCAAATTCACGTAACATCCTGCGAATTGGGCTTCACTCTCTTGGCTCGGCTCTGTGGGGTGATGACCTGTGTTGCCATGACAACCCTAGAAATGGCCACGCTCTCACTACCTTTCTCTATGGACTGCGTGCTTTGCTGAGGTCATCGCTGTCAGTTGCAGTAGTTACTGTGCCTTCACATCTCATCCAGGACAGAGCTCTAATGGGCAGCGTAACCAGGCTATGTGACAATGCCATAGCCCTGGAATCATTCAAAGGCTCTGAGAGAGAGACCAACCCACTCTACAAAGATTACCATgGTCTTCTATATGTACGCCAAGTACCTCACCTGAACTGTCTGGCGAGTAAACTCCCTGACCACAAGGACCTGGCCTTTAAGCTCAAGAGAAAACAGTTCAGCATTGAGGCACCATGTCACTCCAGGGCGGACCAGCACTTCCTGACTGTGCCCAAGTCCATAACACCAACTAACCCCCCCTTACTACCCACCACCACCGGGGTCAATGTGCCCTCGCCTACTCACCCTACAACGCCCACGGTCCATACCAACACTGCCCTCCAAAGAGAAGCAAAACCGAACTGAAAAGAGACAAAATGGCCCCACGCTGCTTCCCTTGTCAAAGCTTTTGACAGGCCCGCGCAGAGGCCCCCAGAGGAGGGTTCAGTTGAAGATGATGACGACGGAGATAACAAGTCAAGTTGTTGTGTTACAGCGCAGTTACACTTTGGCCCTTGTTTGTCCATTTGGTTATTCAGAAGCTTCGCGGAGCTAACTGATTCCCATGCATGTCATGTTTAGTAACATGACAGATACTATCCAATGCTGTTTTACATCAGTCTGTGGAGCGTGAAGGAGAATGCATTTGCCTCCAGACTTGTCTGAGACGGTGAGTCGTGTGAGCAGGGGGGAGCTGGCCGGAGCGGTCATGGTGGCTTCGGGCT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0033588 elongator holoenzyme complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41003 lncRNA downstream 6071 29386757 ~ 29396683 (-) False G30852
TU41002 lncRNA downstream 6071 29389963 ~ 29396683 (-) True G30852
TU41004 lncRNA downstream 12436 29386757 ~ 29390318 (-) False G30852
TU40940 lncRNA downstream 88108 29313958 ~ 29314646 (-) False prrg4
TU40941 lncRNA downstream 88108 29313958 ~ 29314646 (-) False prrg4
TU41054 lncRNA upstream 154204 29615440 ~ 29616375 (-) True G30898
TU41058 lncRNA upstream 156130 29617366 ~ 29617855 (-) False LOC120556497
TU41061 lncRNA upstream 200432 29661668 ~ 29662088 (-) True G30905
TU41059 lncRNA upstream 208572 29669808 ~ 29670355 (-) False LOC120556497
TU41149 lncRNA upstream 701244 30162480 ~ 30288433 (-) False G30969
XM_039794529.1 mRNA downstream 27154 29352248 ~ 29375600 (-) False rcn1
XM_039794528.1 mRNA downstream 43809 29352250 ~ 29358945 (-) True rcn1
XM_039794524.1 mRNA downstream 76290 29318089 ~ 29326464 (-) True eif3m
XM_039796141.1 mRNA downstream 88045 29311192 ~ 29314709 (-) True prrg4
XM_039795365.1 mRNA downstream 92755 29299355 ~ 29309999 (-) True qser1
XM_039794373.1 mRNA upstream 61522 29522758 ~ 29538735 (-) True LOC120555582
XM_039794374.1 mRNA upstream 80371 29541607 ~ 29552473 (-) True rnaset2
XM_039796142.1 mRNA upstream 156084 29617320 ~ 29965747 (-) True LOC120556497
XM_039795576.1 mRNA upstream 705582 30166818 ~ 30178614 (-) True ddx21
XM_039794962.1 mRNA upstream 892192 30353428 ~ 30361232 (-) True tacr2
TU40901 other downstream 133590 29257978 ~ 29269164 (-) False LOC120555471
XR_005638770.1 other downstream 555789 28770001 ~ 28846965 (-) False mafa
XR_005638769.1 other downstream 555789 28770001 ~ 28846965 (-) True mafa
XR_005638771.1 other downstream 555789 28775975 ~ 28846965 (-) False mafa
TU40786 other downstream 732886 28669191 ~ 28669868 (-) True G30693
TU41279 other upstream 1069515 30530751 ~ 30532116 (-) False fam120b
TU41994 other upstream 3430263 32891499 ~ 32894405 (-) True G31602
TU42136 other upstream 3881011 33342247 ~ 33348090 (-) True wdr76
XR_005638776.1 other upstream 3977227 33438463 ~ 33449061 (-) False znf710b
TU42326 other upstream 4345700 33806936 ~ 33816370 (-) False LOC120555494

Expression Profile