RNA id: XM_039794470.1


Basic Information

Item Value
RNA id XM_039794470.1
length 3030
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120555617
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1459164 ~ 1507908 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGCGCTCTTGGGGAAGCCAGGGCTCAGAAACACTAAGGCTGAGCAGAGGAGGGACAGAGCAAGGCAGGTGGGCACTCCTGCAGGAGGAGAGAGTGGGAGAGCGGAGTCGAGTTCACTGAAGACTGCGGGGCTGAATATTTATGTTGGTGCATGTGAAGGAGTGTTGCTGTGGAGGAGAGTTTGGAGCCAGCTAGACAAGCAAGCCATGAAAAACTGACACTGGAGTAACAGCGCTGACAGTGGAACTATGTGTTAAGGATTGTCTGTTGAACTCTTGACTACCTGAAGCCCACTGATATTCTTCTTCGGCTGTTAGAAGAAGTTGTTTTTGCAATGGGGAGGAAGAAGATCCAGATCACCCGGATCGTAGATGAGAGGAACCGACAGGTGACTTTCATGAAGAGGAAGTTTGGTCTGATGAAGAAGGCCTATGAGTTGAGCGTTCTGTGTGACTGTGAAATCGCCCTCATCATCTTTAACAGCTCCAACAAGCTGTTCCAGTATGCTAGCACTGACATGGATAAAGTCCTGCTGAAATACACCGAGTACAATGAACCCCATGAGAGCAGAACCAACTCTGACATTGTAGAGgcCCTGAACAAGAAGGAGCACAGAGGCTGCGACAGCCCCGATGCTGACTCCTCCTACGTCCTCACCCCCACTACTGAGGAGAAATACAAGAAGATTAATGAAGAGTTTGACAACATGATGAAGGGTCATAAAATTTCCCCCGGGCTTCCACAGCAGAACTTCATGCATGGCAGCATGTCGTACAGTCCCggtgcaggaggaggaggaggaggaggaggaggaggagcaaccTCCCAAGCTCTAGCTGCAGCCACAGCCGCTCTGGCTGAAAGTGGGACCCTCTCCTCGcctcacacacacctccacagaAGCATAAACCCTTCACAAAGACCTCCCAGCACTGGaaacacagGTGGCCTGCAGGGCAGTTCTGAtatggctctgcaaaatgggcCTGGACCAGTTGTGAACGGTTTTGTGGGCTCACATGGTGGAGGCAGCTTGGGGAAGATCATACCACCCaaatctcctcctcttccacctcCTGGGAACAACATGGTCCCTACCAGCCGCAAGACAGACCTCCGAGTGGTCATCCCTCAGTCCAAAGGAATGATGCAAACActgAGTAACCAGAGGCTGAGCAGCACCCAGTCCAGCCAGCCTCTGTCCACCCCAGTGGTCTCCATCACCACACCCAGCCTGCCTCACCAGAGTCTGGGCTACTCCGGCATCAGCTCGGCTTACAACAACGATTACTCTCTGAACAGTGCAGAGCTGTCGGGCTTCGGCTCCCCTGCAGGGCCCTCTTTGGGCTCCATGGCGGCATGGCAGCAACACCAGCTGGTCTCACTGGGGTCGGGGAGCTCCAATCTCTCCATCAACACCAACCACAACGTCAACATCAAAGCCGAGCCCATCTCCCCACCCCGCGACCACCTCAGCCAATCAGGGTACATGACCCAGGCTCGTGCCCCTCCCCATCCTCACCCATCCACCAGAGCAGACATGGGGAGGTCTCCAGCAGAAAGCGTCTGCTCCTCCTGCAGCTCCCACGAGGGGGGCAGCGACcgcgaggagcagcagcagcggctgGACTTCCACATGAGTGGCTCAGAGGGCAGGCCGAGTCCCACGTTCAAACGCATGCGAATGGACAGCTGGGTGACATAGACACCTACATGACGTCACAACTCCAGGGCAATCACAGGAGGGACACTGTTATGCAAATGAAGTGTGGATTGTATtgatgtgtttctgttattttcactttcagttatctttgttttttatctttttttgtggaCAGATTTTTGTGGTCGGAAGCGTTGAGCAAAAATAGTCTTGAAAATTATGGATCTGTCAGAATGATCTCATCAACTTTCAGAAAATCTTCAGTGGTACTTAAAACACAACATGCTGTcctttttcaaatataaatcaTTTAAGCATCAGAGACAATAATAATGTGGGTCCAATTGCAGTACAATCTGTCATTTTCTTACCCAGTGGGATGCAGTACTTTACACAGAACTATCAGAAAAGCTGAGATTAGTGTTTTCTATCAGTCTTGTGGCTTCCTGATTTAGGTAGTAAAGCAGTGAAGTGCTTCTAGATGTCTCCCACTGGGGGTCACCTAATTCATTTCTGATCTTCTCAGGGTTTGAAACATTGAACAAGTCCAACATGAAAGTAATACTCCCTGCACATCATCCCTGTTAGTCCTCTTTATAAAAACACTTAATTTATATCAGCCAAAGCAGTGtgctgtttttatgttgtttgtgtttgtttttatattgtgcACAGAATAAGACaatttttcatcagatttaaAACTGAAAGCCATGGACACTTGTTCTgtatgtactatactatgaaataTGTCATTATTGTTTTGTATATACTATCTTTAATATATATCACTTTTGGTGTAACTATATATCGTTGATCTGTCTATTGTATCTGTCTGGGTGAAGTATGACACCTCCACCAGATTTGACAAAAGTATATTTTTGTGGATGATTGCCATATTTACAAGGCGTTGTCCTTTCCTTTCGTACGCCATGCTGCACTATCTGGAAACCAGGGTCTCCAATAATATACTGAAAGGGAAAAGCAAgaaaatatttgttatttaacaAAAGAAATATAGCTCTTCAGAAATTGTTTTACAAAAGGGATGTACTATAACAGACAAAGATGGCAATAGAAAATGATAAAACTTTCTGATTTTGTACGATAGCCTCAGCAGGGCTAAATTTGGCGAGACTGATAAGGTGAGGTGAGGATACATGAGCTCACATGGGACGAGAGGAAAGCTACTTATTAATCTTAGAACGAGTCTCCTGTCACAATaaccacagagaaacacacaagaACAAAGTTGTACTTATATTGTGTGTTTCCTATTAGATCATTTAAGTCACAATGAAGGAACTAAACTTAAAGATGAATTAATAAAAGTTGATCAGAAGTTCATACACTGATGAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33671 lncRNA downstream 622 1458037 ~ 1458542 (-) True G25039
TU33610 lncRNA downstream 180347 1278569 ~ 1278817 (-) True G24988
TU33609 lncRNA downstream 192204 1266686 ~ 1266960 (-) True G24987
TU33600 lncRNA downstream 204540 1252718 ~ 1254624 (-) True G24978
TU33596 lncRNA downstream 216461 1240767 ~ 1242703 (-) True G24974
TU33736 lncRNA upstream 20816 1510165 ~ 1513612 (-) False LOC120556048
TU33754 lncRNA upstream 171145 1660494 ~ 1660735 (-) True G25110
TU33755 lncRNA upstream 171483 1660832 ~ 1661353 (-) True G25111
TU33756 lncRNA upstream 172010 1661359 ~ 1661697 (-) True G25112
TU33757 lncRNA upstream 172379 1661728 ~ 1662486 (-) True G25113
XM_039795079.1 mRNA downstream 2056 1410674 ~ 1457108 (-) True LOC120555898
XM_039793885.1 mRNA downstream 256082 1193040 ~ 1203082 (-) False tdp1
XM_039793880.1 mRNA downstream 256082 1193040 ~ 1203082 (-) True tdp1
XM_039795956.1 mRNA downstream 268278 1176462 ~ 1190886 (-) False LOC120556384
XM_039795403.1 mRNA upstream 22144 1511493 ~ 1555646 (-) True LOC120556048
XM_039795401.1 mRNA upstream 98195 1587544 ~ 1642339 (-) True LOC120556047
XM_039795088.1 mRNA upstream 175421 1664770 ~ 1740839 (-) True cep89
XM_039795405.1 mRNA upstream 254843 1744192 ~ 1774283 (-) False rhpn2
XM_039795406.1 mRNA upstream 254844 1744193 ~ 1774421 (-) True rhpn2
TU33668 other downstream 2073 1431968 ~ 1457091 (-) False LOC120555898
XR_005638786.1 other upstream 99537 1588886 ~ 1642348 (-) False LOC120556047
unassigned_transcript_137 other upstream 343972 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 786126 2275475 ~ 2277091 (-) True G25228
TU33896 other upstream 786126 2275475 ~ 2276009 (-) False G25228
XR_005638726.1 other upstream 4666873 6156222 ~ 6167529 (-) False LOC120555534

Expression Profile