RNA id: XM_039794477.1


Basic Information

Item Value
RNA id XM_039794477.1
length 3713
RNA type mRNA
GC content 0.47
exon number 17
gene id cdh16
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 22369351 ~ 22407710 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATAAATATTCATGTGATCGTATCAGTGGACTGGAACCTCACTGGCCATTGGTTTTACAGGAAGGGAACAAGCAAATTAAGCATGTTTATCTCAAGGTGTTAACCATTAATCCACAAAAGGAGTACAAGTATGCAATTTTTCCACCCAATTTAAACTCCTCTCACACCTCAGAGGGAACACACTCACTTGGAGAAGGTAAGGTACAAAGCCTTTTGTTTAAAATAGGAGGATAATTGAATATGTTTGCTACTAAACTGATTTATTATCCACCTTTATCACTGCTGTTGTTGAGCTACAGTATATCCAGAGTTTGTTGTTGTACTTTAGAGACTTGAATTGGAGTCAGTGAAGTATATAGGGCATTAATGATACTTGTACACTGCACCGTAACCTGTGATTTGGtattgccaaaaaaaaagaagaatctgTATCCTGTATCTAAAAGATATTTGACAGACATTAAGGCTCCAGGGAAATTACATATTGTTCGCACCCAACTGGATTTTACCAGACACATGCTTTACTTCCAAATCAAATGTGACTTTATTGGTCTTCTGTGCTACTTTTAATAGTGGAGGCTCAGATGTTGCTTCAAACAGTGTTGTACGTTGTTATGTATTTAAATGCATGTAAAAACTGTGAAATCTATGAACCATTGTGGTGAATCAGTAACAAGAAAGAAATTGTGTTAATTGTTGGGCTGAGGCCATGTGATTTGAAACGCTGTGAATATGCCACATTTACAGGGACTCATGGCTGACAGAGGAGCTACGACAATGCTCATCATAGCTCTCATATTGATGATACTTTACACATTTGCACCATGCTCTGGGGCAAATGTTAAAATTGGTGTCCCTGAGAACTACGATGGTATTTTTCCATGGTATCTGGCCAAGCTCCATAGTCTGCCAGGTACCTACAGCGACCTGGTGGTAGGGGGGGATGATGAGGGGATATTTGGAGTCGACGCTCAGTTTCTGTACGCTCTAAAACCACTGGACAGAGAGAAACGGCCGTCTTACTCTCTGCAGGTGTCCTTCAGAACATCAGAGCACCGTCAGAGCTTTACTGTCGAAGTGTGCGTCATCGACAAGAACGACAATGTGCCCACTTTTATAGAGGAGAGCATGAGAGGCAGCGTGCAGCTCGGGCTTCTCAAAGGGATCCCATTCATGCAGGTGGAGGCGCTGGATCGTGATGACCGCAACACTGCCCACGCTGAGCTGCGGTTCAGCCTCATGGAACAGACACCCAGGATTCCCTCCAGCCAAATGTTCTTCATCGGCTCCATCACTGGAGAGGTTTCCCTCACGGAGGAAGGAGCCTCTACTCTGGACCCAGAGATGTGCGGCCGCTATAAGCTCTCAGTGATGGTGAAGGACATGGCTGGGAAGGCAAACGCTTTCTTCACCTCCGGCATCGTTACTGTCGAGGTGACAGGAAACACGTGGGCATCTCCCGACCCTGTACGACTTCAGGAGAACCTCCCCGGCCCCTACCCCATCCCCATCTCACAGGTCAAATGGAGTGGAAGTCAGGCAGTGTACAGTTTGGAGGGGGAGTTTCCAGAGATGCTCTTCACCATCAGCAGAGAAGGAGTCATTTATCTCAATGCCCCTctggacagagagacacaagacCAGTTTCAGATCAGCATTGTGGTTGAGCGTCCAGATGGCAGAGAGATTGCCAAGCCTGTGGAGTTGAGGGTGATGGTGGGTGACGCCAATGATAACAGACCCACCTTTCCAGAGGCACAGTACCACACAGTGGTCAAGGAACTGGCTGCTCGAGGGACAGAAATCCTGACAGTGCAGGCAGCCGATAACGACGATCCCAAGACGGACAACGTGCGGATCTTCTACCGTTTAGTCGGACAAATTCCAGAGAGCCCTCGTGCCCTCTTCAGAGTGGACCGTGACTCAGGGGTCATCTCCGTCCAAGCAGACAGTATGGAGGGCACAGCACCTCAATACACCCTCACCATCACTGCTGAGGATGCCAAAGGTCTTAACAGTTCGTGCACTGTGTTTGTGACGGTGCAGGATGAGAACAACAACCCGCCAGTCTTCTCCCAACATGAGTATGGGCCCTTTCACATTCCAGAGGACGCTCCAGTGGGCACCACAGTAACAGCTGTGCTGGCAGGGGATGCAGATGTTCGAGGAGGAGACAGCTGGAAGGTGGATTACCGTTTAGAGTCTGGGAACGAGGAGGAGGTCTTTACCTTAGTGACAGACAAGCAGACCAATGAGGTCTCACTCATCCTTTCAAAGGTCTTGGATTTTGAGCGGGAGAGTGAGTACATCCTCGTGCTCAGTGCTCAGAACCCAGTGGCTCTGGTCCGTGGCCGATACGGACCTGCATCCACGGCAACAGTCTCCATCTATGTCGACGATGTGAACGAAGGTCCAATCCTGTCTCAAAGCCATTATGAGGTGACTGTCAGAGAGGGCGAGGAACCAGGACGGGTTATCGCCACCATCCGAGGTTACGACCCTGATTCTCACCCAATCAGATATTCTCTTCAAGGAGACACCAAGAAATACTTTTCAATAGGGAAGTATTCTGGTGAACTGAAGACGGTGCAGGCCTTGGACCGAGAGGAGAACAGCACATACACCATGGAGGTCATTGCAGTGGATGGGCGAAACTCTTCCTTATCTGCGTCCACCCTGGTGACTGTCCATATCCTGGATGTGAACGACAACAGTCCAGTGCTGGTTGGAGACTATTCCTGGAAGTACCTGTGTACACCTCGATGGGAGGAACAAGCTCTGGTGCTGGCCTCGCGGGACAGTGATGGGCCACAGCACGGAGGACGACTCAACTTCTCCCTGcgcagtgatgtcacagtccgGCGTAACTGGAAGCTAACACCTATAAATGATACTCACACCAACCTGTCCTTAAACACCCCATACCTGGCCCCTGAGGTCTACACTGTGCCCTTCACCATCTCTGACAGCAGCTCTCCTCCCAGGAGCACCTTCATAAACTTGCCAGTGACAGTGTGTCCCTGCAACGTCAGAGGGAACTGCAAAATGGCTGCCAAGCAATTGCAGGGCATGCCAACTATTCAGTCTGCAGTGGGGATTCTGCTTGGCACCTTTGCAGTCATAGgGACTATCCTCATTGTTGTGTTCGTGAGGCTGTCATACCAGAATCCCAAACAGCCGAGCAAAACTAGCCAGGAGAGAGTTCCCCTGAAGATTTCAATCTAATTAGGATTACACTGTATTGTATGTCCTGCTCACTGCCTCAGCCAACTGGACCAATGTCACAATGTTTTCAGTGCACTGAATTCATTAAGTGAATGTCTAAAAATGAATTTGGTTTCAGTTATTGGATCAAAGTTCAGATGTACACTGACGTGAAAACAAAATATCAAGATTATTAATCAAGATGTGTAATGTATGTTAAGTGCTTAGGTTTGTGCCTGGGAAATGATGTTAACTTATGTTTTAGTTtgcaaacatttttattgcTGTAGAATATGTTTAAAAGTGGTGCCTAATAGAACAACAGTCTAGGGCCATGGTTTGGAAAATTGAGAGATTTGGAGAATAAAGGTATAATATTAAAAGAGAAAAGTTGCTATGTTTCAAGAATAAAGTTGTAATTTTTTAGAAGAAAGTCCTTTTTTTAGTTTAAAGtcataatataaaaaagttgcAAGATATTTAgatgaccttttgacctttTCTTAtta

Function

GO: NA

KEGG:

id description
K06810 CDH16; cadherin 16, KSP-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38655 lncRNA upstream 8799 22368129 ~ 22368503 (+) True G29085
XR_005638821.1 lncRNA upstream 216407 22159570 ~ 22160895 (+) True LOC120556188
XR_005638822.1 lncRNA upstream 216407 22159570 ~ 22160895 (+) False LOC120556188
TU38534 lncRNA upstream 247724 22128964 ~ 22129578 (+) True G29005
TU38533 lncRNA upstream 292901 22083945 ~ 22084401 (+) True G29004
TU38672 lncRNA downstream 256 22407966 ~ 22408239 (+) True G29101
TU38711 lncRNA downstream 126232 22533942 ~ 22534868 (+) True G29135
TU38716 lncRNA downstream 140990 22548700 ~ 22580247 (+) True G29139
TU38717 lncRNA downstream 140990 22548700 ~ 22601559 (+) False G29139
TU38774 lncRNA downstream 344758 22752468 ~ 22753645 (+) True G29176
XM_039794480.1 mRNA upstream 162 22374134 ~ 22377140 (+) True rrad
XM_039795356.1 mRNA upstream 150196 22189896 ~ 22227106 (+) False lmo7b
XM_039794481.1 mRNA downstream 25801 22433511 ~ 22440373 (+) True nae1
XM_039794746.1 mRNA downstream 63799 22471509 ~ 22488379 (+) True dync1li2
XM_039794747.1 mRNA downstream 63799 22471509 ~ 22488379 (+) False dync1li2
XM_039794748.1 mRNA downstream 81802 22489512 ~ 22507555 (+) True cmtm4
XM_039794238.1 mRNA downstream 131570 22539280 ~ 22542996 (+) True trappc2l
TU38307 other upstream 973852 21396213 ~ 21403450 (+) True G28826
TU38234 other upstream 1616155 20711104 ~ 20761147 (+) True G28770
XR_005638835.1 other upstream 2857084 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 2879078 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 2879429 19497738 ~ 19497873 (+) True LOC120556587
unassigned_transcript_140 other downstream 139491 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 357009 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 460010 22867720 ~ 22881366 (+) False ankrd11
TU38851 other downstream 584427 22992137 ~ 22992502 (+) False LOC120555548
TU38916 other downstream 729022 23136732 ~ 23137027 (+) True G29292

Expression Profile