RNA id: XM_039794522.1


Basic Information

Item Value
RNA id XM_039794522.1
length 4474
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120555641
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18585773 ~ 18604970 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACACAAATGGCGGACGTTGTAAACAGAGCCAACAGCTTCTCGGAGGCCAAAGTGAAACATCTCTTTTTAAGATGAATACCGTAGAGTTTGAGCGTTTAGATAGCCTGGAGGGCTGGGTGGCCGTTAAAAGTAACATATTTGAAGAACCCGAGACGTTTAAGCTAGGCTTCATCGTACAGTGGAATGTCATCGAGTGTAAATTTGCGGTCACCTGCCACAACCGGACGTTACAACGGCAAAAACGCAAAGCCGAAGAAGTCGCTTTTGGCGACGTTCAGATGAGCTGGGCTGGACTCTTCTCCGTGAGCGATTTGAAACACATCCATCAGCAGTTTATATGTGTGGCAGACGTCTTGGTAACCTGCTTCCCGGATTTGTCAGAGTTCGAAGACGGCAACATTTGGGACTTGCTCTTCCTGAATCGGAGGTCAGGTCCCGAAGACGACGAGAGGGATTTTGACACGCCGTGTAGAAAACTCGAAAAATACTTCAGCACAGCCATTGACATCTGCGGACGAAAGATTGTGCTCGATACGTTGTTCACGCAGGATGAGCGGGATGTTGATGAGTACTTTGAAAATCTACAGGAGTTCAAGAGGAAGACCATGCAGGAGGAGATGTCGAGGGCCAAGGCTCACGTacggcagCTCCTACAGAGTCATGGCAGTGCAGACCGAATGGTCGCGCTGCTTTCCATCTACGAGGAAGAGGATGAGGCCTACCAGGACCTGGTCACTGTGGCCACCACCTTCTTCCAGTATCTGCTCCAGCCTTTCAGGGACATGAGAGAGCTGGCCTGCCTCTACAAGATGGACATCCTGAAGTCTTTGGAGTTTGAGGACTTGGGTCCTAAGAGAATCGCAGCTCTTGAGAAGGAGGCGGAGGATTGGAGAACGAAAGCAGAAGATGCAGTCGCCTCAATTCAGGACATCACTGTCACCTACTTTGCACAGACTTCAAAGGCTCTGGCTGGTATGTTAAAGCAGATGGAGGAGGATAAGTGTCGTTTTGGAGCCGCTGCCTGGGCGTCTGCAGCTCCAAGACTGGAGAAACTACGCTTCCTTCTAGCCAAAGAAACCCTGCAGCATATGAGAGCTACGGAGATGTGCCTCAACCGCAAGAAAGACGGCATCAGAGAAAGGTTGGGCGGCCTGTCTGGCAGAGTCAAGAGCCACAAAACTGATTCCAGTTCTACGTCTAAGTACGGtcagcagcaggacacagtGGACGAGCTGGAGCTGGAATTCTATGAAACCCAACTAGAACTGTACAACACCAAGTTTGAGATCCTGAAGAATGAGGAGCGGCTGCTGGTGGCTCAGATAGACACGCTGCGACGGCAGATTAAAGaaCTGAAGGAGGAGGTGGTGTACTATGACGTGTGTGAGGAtccagaggagctgcagagcaTGGTCCACACAGGTATTCAACCAACGGACTCTCCGGCTGTCACTCTCCTCAAAAGACGCCTACAGACCTTGGAGACCAAGAGAGGCAACATCTGTGCCCGACGAGCTTATCTCCGCAACAAAAAGGATCAGTGCATAGAGGCCAACGAGCAGAAGAGGCTGCCCGCCAAGCAGAGCTCCATACTCTTCAACCAGCATCATCACGTCCACCTGAAacgagagaagaggaaagaggaggagcagcagaggaAACAGTGGGTGGACCTGGAACGAGAGAAGACTCTGAGCAGATTACGATCCTTCAGAGAGAGGCGGCAGGGCCAGTACATGCTGAAGACTCCTCATTCCAGGACGTCTCCTTCAGAAGTCCCAGTTCCCTCCCAGCCGCTGTCCATCATCAGCCTCGGCCCCTCGGAAGGACCCCCCTCTGTCCGTCCTGCACCCAGGCGCAATAAAACACCCAACAAACAGCAGCCTAAAGACATCCCTGTCCAAATCTTCTCTGCACCGCCACCATCAACAACCACCTGTCCTACTGCAcctcctcccccaccaccaccaccaccaccaccaccacctcccccCCCACCACTGCCCCCTGCCTTAGCTCCTCCACCTGTCCGAGCTTCGCCTTCCTCTGAAGACGCACCAATGCCTCTCAGTGAAAAAGAGGACCCTCCTTTTCCAGCCAAGAACATGCTCAAACAAAATATAGGAACAATGGATCAAGTGTTGGCCTCATTGCAACGTGGACAGATACAACTTCGAAAGGTCCCCGTTCCCAGCGCAGCGTCTCCTGCTGGGGACTCGAGGAGCAGTCTGATGTCTGCCATCCGACTGGGAGTCACCCTGAAGAAGATGGTTCGCGCACGCGATGAAGTCCCGAGCGGCGGAGACAACGAGCTGGAGCGCAGCATCAAAGCCGCCATGATGAGGATGAAGAAGGTGGCAGCCGACTCTGACGAGGATGACCGAGGAGACGACGAGACCCACAACACAGACTGGGACAGCTGAGAACTAGgcgctgcacaattaatcgaatatTAATCgtgatcacgattttggcttcccacaaTTAAATGCACATGATAGACTGCGATATTGACCTCTACGCACATCAGACCGCTCGGTTTATAACTCGACTCAGCCAGATATTTCTCCGCTCTCGGCTGAGATGGACGGCATAGCGCTGCAGTGTTTTCAGTTTTCTGTTAATTTATACAGCATTAACACGATTACATTTATAGTGTTTACACTGTATGAATTAGCCCAGGGGCTAGCGGACGTTTAGCTAGCGGCTTAATCCCGACAGAACACCACAGTGAATTTCAGTCTGCATGCACGTTTTTTCAGCTTAACATTGTTGAACCGGAGCAGCTAATATCGTTAGtgagagcaacaagttagcggACTGACGAGTCgtcactgctgtgtgtgtgtgtgagaggagagAAACGCCACAGTAAATGACACTAAAGACTCacactgagctgaaatgaaaacaCTGTGCTGCGACATGTGTCTTTGGATTTTAATCAAACGCATTCATTTTTAGGGATTCTGTTATTCCACAGcattgaaggaaaaaaaagaaaaaaaagaaatctagcCGAATCTACCCAACGGACGAATATCCGAATAGTCCAGCCCTACTTATTTTGATGCAAAGATTTGTACATtagcaggaatgtagcacaacaAGTGAAAGCAGTGCTCTGTTTATTTGAATGTAAAAGTgcaataaaaatattttgtccCTAAAATCATTGAATAATCGTGGTAAATGATCGTGATGCCAATATTGATtaaaaataatcgtgattattattttggccataatcgtgcagccctaccgaaaccacacacacacacacacacacacacacacacacagatgaggcTGTTCTCTTACATTACCCCCACTATGTTTTCTTCACGGTTCTGAGCTACAGCTTACGTTGCTGCCAAATGTTTACCAAAAAGTTTCCTCTTAGACACGGATGGGATTACGCCTCTTCTGACTTAAACATTGCAGTTTTCAGAATAGCCCTGAGGTGTTGTAATGAATCCAAAACCGCTCGAATCCCACTAACCAGCTAGTATCAGTATCAGGATTTAGACTCCTCTAAAGCAGCTGATTTGCAGAAAGCCCAGAGCGAATGAGGCGTTGTGCTTCACCGCTCATTAGGAAGAAAAGCCAAGCCGTAGTGCTGTAGTACAATGTGTAAATGATTGAATTGCTCCCAAATCGCCATCTGAAGGCCTTGTTGTGAGACTGTCACACAGCAGGGGAAGCCTATGCTGCAGGCAGAGACGACCTCACTACACAACTCCACTGTCACAAATACTCATTTACCCACATTGCTGAGTCTAAATTCGATTGACTTCTATTATTTTGAAAGTAATTAATTAAATctgaacaattatttatttttacttgacTTTACCCCAATAAGGGCTACAGCCAACTGGTTTTTGTAGTTGCATTGTGCATTTTATTCCTAAACAAAGGTGAGTTATATCCTGAAGTGCAGCAGTGTTAATTATTTACAGCCTACATGCCTGAAGTCTGCGTCAATGTTTGTATTTGAtggactgtttttctttttgtgtcgGAAAAGCGTGAATGTGTTGGGCTTAATTTAGGCGCAACTTATACATAGTCTGTTCATTTTTTCTCTATGATGCCATAACAAACACTACattatcttttttaaataaccaaAATGTCCTTTTAGTTATGGAATTACTCTTCGGTGTGCACAGCTCTGTCTCTAGTTGTGATTGAATGCTCTGAAACGGTTTGCAGACAGGTTATTGATAATTAGGGCAAACTTTGCACTTATGACCTTTTGAACCTGTGACACAGAGCACTTACCTGAAAAGACAAGTTCATAATGTtttatgtacaaaaaaaaatacaatactgTATGGCAAGACATAATGATTAATTGCTGCAAAGATATGAAACTTGTTCCAGTGTGTTGCAGACGAGCTGATGAAGGCTGAAACACACTTGTACTGCTGTGTTTTAATAAGAAATAAAGAGATCATAAACATGAA

Function

GO: NA

KEGG:

id description
K20479 WHAMM; WASP homolog-associated protein with actin, membranes and microtubules

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37466 lncRNA upstream 140477 18444816 ~ 18445296 (+) True G28163
XR_005638782.1 lncRNA upstream 404572 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 666577 17918900 ~ 17919196 (+) True G28083
TU37335 lncRNA upstream 696556 17888761 ~ 17889217 (+) True G28065
TU37504 lncRNA downstream 2335 18607305 ~ 18609878 (+) False G28195
TU37505 lncRNA downstream 2335 18607305 ~ 18615809 (+) True G28195
XR_005638784.1 lncRNA downstream 241299 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 449154 19054124 ~ 19055004 (+) True G28393
TU37775 lncRNA downstream 452576 19057546 ~ 19057853 (+) True G28394
XM_039796123.1 mRNA upstream 9831 18561873 ~ 18575942 (+) True LOC120556478
XM_039794633.1 mRNA upstream 28438 18505528 ~ 18557335 (+) True pde8a
XM_039794634.1 mRNA upstream 28438 18515850 ~ 18557335 (+) False pde8a
XM_039794034.1 mRNA upstream 94705 18486062 ~ 18491068 (+) True gatm
XM_039796122.1 mRNA upstream 127221 18454656 ~ 18458552 (+) True hdc
XM_039795134.1 mRNA downstream 34312 18639282 ~ 18642799 (+) False LOC120555930
XM_039795135.1 mRNA downstream 34461 18639431 ~ 18642799 (+) True LOC120555930
XM_039795743.1 mRNA downstream 54892 18659862 ~ 18663990 (+) True LOC120556269
XM_039795745.1 mRNA downstream 55674 18660644 ~ 18663990 (+) False LOC120556269
XM_039795194.1 mRNA downstream 59537 18664507 ~ 18670988 (+) True zrsr2
TU37478 other upstream 17293 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 843039 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3099352 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3139381 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5347954 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 882276 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 892768 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 893123 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 907386 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 2106134 20711104 ~ 20761147 (+) True G28770

Expression Profile