RNA id: TCONS_00073515



Basic Information


Item Value
RNA id TCONS_00073515
length 600
RNA type mRNA
GC content 0.46
exon number 6
gene id XLOC_037363
representative False

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41080029 ~ 41083181 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTAATGCGCATGCCCGAGTCTGAGCCTGCTGCTAGACACAGAAAAAAGCAGCACCCTTTGCCCAGTGCTCAGACTGACAATGAAAGCTGTTATTCTGGCAGCAGGTTATGGCACGAGACTGCAGCGGGATATTGAGATCGACACGACGGGGAAATTCAAGCATTTGAAAGGCATTGCCAAACCTCTGCTTCCCGTCGGTTCATGTGCACTGATCTCACACTGGCTTCAGGCACTGACCAAAACAGGATGTGTGGACACTGTTTATGTGGTTACAAATGATCTTCACCATGAAGCGTTCCAGCAGTGGGCTCAAGAATTTcccaatgttaaaataataaacgaTGGTACAAGAAGAAATAAGGACAGACATGGTGCCGTTGCCTGTCTCCAGTTGACAATCAAGTTGTGTGCTGTGGATGACGACTTACTAGTTATCGGAGGAGATACTTTATTCAAGGAGGACTTCAGCCTCAGGACATTTACAGAGAGATTCTTTGAAGTCCAATCTAAAGACAAAGAGAGCAATTTAGTGCTGGCATACCGATGCAAAGATGAGGAAACATCCAAATACGGGATTCTAGAGTTGGACGAGGACCTTAA

Function


GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-2858 Predicted to enable nucleotidyltransferase activity. Predicted to act upstream of or within biosynthetic process.

Ensembl:

ensembl_id ENSDART00000141179

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00074931 lncRNA upstream 1214357 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073476 lncRNA upstream 2461698 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 2609222 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073463 lncRNA upstream 2658993 38420012 ~ 38421036 (+) False XLOC_037338
TCONS_00073462 lncRNA upstream 2661918 38412748 ~ 38418111 (+) True XLOC_037337
TCONS_00073527 lncRNA downstream 155660 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00075179 lncRNA downstream 155660 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073528 lncRNA downstream 158187 41240768 ~ 41246508 (+) True XLOC_037366
TCONS_00073533 lncRNA downstream 392361 41474942 ~ 41479386 (+) True XLOC_037368
TCONS_00073534 lncRNA downstream 427367 41509948 ~ 41579002 (+) False XLOC_037369
TCONS_00073514 mRNA upstream 34156 41040294 ~ 41045873 (+) True XLOC_037362
TCONS_00073512 mRNA upstream 45855 41024973 ~ 41034174 (+) False XLOC_037361
TCONS_00073513 mRNA upstream 49429 41025025 ~ 41030600 (+) True XLOC_037361
TCONS_00073511 mRNA upstream 136892 40939336 ~ 40943137 (+) True XLOC_037360
TCONS_00073508 mRNA upstream 155086 40874194 ~ 40924943 (+) True XLOC_037358
TCONS_00073519 mRNA downstream 20546 41103127 ~ 41113878 (+) True XLOC_037364
TCONS_00073521 mRNA downstream 73706 41156287 ~ 41208343 (+) False XLOC_037365
TCONS_00073520 mRNA downstream 73706 41156287 ~ 41208343 (+) False XLOC_037365
TCONS_00073522 mRNA downstream 74237 41156818 ~ 41203335 (+) False XLOC_037365
TCONS_00073523 mRNA downstream 74237 41156818 ~ 41207035 (+) True XLOC_037365
TCONS_00073510 other upstream 182846 40895771 ~ 40897183 (+) True XLOC_037359
TCONS_00073509 other upstream 183217 40895649 ~ 40896812 (+) False XLOC_037359
TCONS_00073505 other upstream 801766 40278147 ~ 40278263 (+) True XLOC_037355
TCONS_00073504 other upstream 942417 40137497 ~ 40137612 (+) True XLOC_037354
TCONS_00073499 other upstream 2066594 39011226 ~ 39013435 (+) True XLOC_037351
TCONS_00073529 other downstream 166876 41249457 ~ 41266843 (+) True XLOC_037367
TCONS_00073536 other downstream 510915 41593496 ~ 41593610 (+) True XLOC_037370
TCONS_00073538 other downstream 600345 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073540 other downstream 650952 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073545 other downstream 907505 41990086 ~ 42038319 (+) True XLOC_037377

Expression Profile


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