RNA id: XM_039794542.1


Basic Information

Item Value
RNA id XM_039794542.1
length 7496
RNA type mRNA
GC content 0.42
exon number 24
gene id rasa3
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21484682 ~ 21545256 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgctgctgctgcgggtcTGAAGCTGAATCTGCCCGCTTGTTCTCAgccagcagcagaagcagtgATCGGGACCGGAGTGTAATCGCTGTCCGGAGTGCATAGATGTGCAAAACCCCTGGATTATCCGTGCGCTGGAGAGGCCAGAACCGACCACCGTGGAGGACTGTCTTAATCTAGTTTTCAAAAGGGAAAGAGCCACGGGGAAAGCATGGCGGTAGAAGAGGAAGGTCTCCGGGTTTTCCAGAgcgttaaaataaaaatagGAGAAGCAAAAAACATCCCTCCATACCCGGGGCCAAACAGGATGAGGGACTGCTACTGCACCGTCAACCTGGACCAAGAAGAGGTCTTCAGGACCAAGATCATCGAGAAGTCCCTTTGTCCGTTCTACGGGGAGGACTTTTACTGCGAGATCCCACGTAGCTTCAGACATCTCTCCTTCTACATCTTCGACAGGGACGTCTTCAGGAGGGACTCCAGTATCGgcaagGTTGCAGTGAAGAAAGAGGACCTGCAGAAATATCACGGCAAAGACACCTGGTTCCAGCTACAACCTGTCAGCGCTGACTCAGAAGTGCAGGGAAAAGTGCATCTGGAGCTGCGTCTAAGTGAAGTCATCACAGACAGTGGAGCCATCAACCATAAACTAGCCACACGAGTGTTGGAGTGCCAAGGTCTTCCAATCGTCAACGGCCAATGTGATCCCTACGCTGCTGTCTCCTTACTTGGACCTTCAAGGTCAGAAGCTAAGAAGACCAAAGTGAAGAGGAAAACCAACAATCCACAGTTTGAGGAGGTTTTCTATTTTGAGGTGACGCGGCCGTTAAGCTACACAAAGCGGCAGTTTGATGTTGAAGAAGAGGATGTTGATAAGCTGGCACTGAGGGTGGATCTGTGGAACGCCAGCAACCTGAAGTTCGGGGATGAGTTCCTGGGAGGTGTGCGAGTTCCTCTGCGAGTGCTGGGTCAGGCTGGTGTCCACGACGCATGgtACTTTCTTCAGCCCAGGGAAAACGGAGGGAAGTCAGTTAAGGTGGAAGAGCTCGGCTCTCTGCGTCTGAACATCGTTTACACTGAGGACCACGTCTTCCCCTCCGAACACTACACTCCCCTCAGAGATCTACTGCTGCACTCTGCTAACGTAGAGCCCGTGTCGGCGTCCACAGCTCACACTCTGGGGGAGGTGTGTCGAGAGAAACAAGAAGCCGCCATTCCCCTCGTGCGTCTGTTTCTTCACTACGGCAAGATTGTGCCTTTCATCAGCGCCATCGCTCACGCCGAAGTCAACCGCACACAAGATCCCAACACCATTTTCCGGGGAAACTCACTGACTTCCAAGTGCATTGATGAGACAATGAAGCTGGCAGGAATGCACTATCTGCAAGTCACACTCAAACCCATCATAGATGAGATCTGCACAGAACACAAATCCTGTGAAATCGACCCAGTCAAGCTCAAAGAGTCGGAGAACCTGGATACGAACAGGGAAAACCTTCGTCAGTATGTGGACCGTATCTTCAATGTTATCACCACCTCTGGTGTTCGTTGCCCCACCGTCATGTGCGATATCTTCTTCTCTTTGAGAGAGTCCGCTGCCACGCGTTTCCAAGTTGACCAAGATGTCCGATACACAGCAGTGAGCAGTTTTATTTTCCTGCGTTTCTTCGCTCCAGCCATCCTCTCCCCAAACTTGTTCCATCTAAGGCCGCACCATCCAGATCCTGCCACCTCTCGAACCCTCACCCTCATCTCTAAGACTATCCAGACCCTGGGAAGTCTCGCCAAGTCTAAATCTGCCAATTTCAAAGAGTCTTACATGGCTGCATTTTACGACTACTTCAATGAGCAGAAATATGCGGACGCGGTGAAGAATTTCCTGGATTTGATCTCCACCTCTGGCAAATGGGATCAGAAGAGTATTGAAACACCAATCATGCTGAAAGAGGGATTTATGATAAAGAGGGCACAAGGGAGAAACCGGTTTGGAATGAAGAACTTCAAGAAGAGATGGTTTCGCCTCACCAATCACGAGTTTACCTACCACAAAACAAAAGGTGAGGGCGCTCTGTGCAGCATTCCCATAGAGAACATTCTGGCTGTAGAGAGGCTAGAGGAGGAGTCTTTTAAGATGAAAAATATGTTCCAGGTTATTCAGCCGGAGCGAGCGCTCTACATCCAGGCCAACAACTGCGTCGAGGCGCGCGACTGGATCGACATCCTGACCAAAGTCAGCCAGTGCAACCGCAAACGCCTTAGCACTTACCATCCTTCAGCCTACCTCAACGGCCACTGGCTCTGCTGCAAGCTCTCAGCAGACGCAGCCCCCGGGTGTACGCCCTGCACTGGCAGTCTCCCAGCAAACATCCAGCTGGACGtagatggagacagagagacagagaggataTATTCCCTGTTCAGCACATACATGACCAAACTGATCAAGATGCAAGAGGCCTGTGGCAGTAAGTCTGTGTACGACGGGCCTGAACAGGAGGAGTACTCCAGCTTTGTCATCGACGACCCCCAGGAGACCTACAAAACCCTGAAACTGATTGTTTCAGCTGTGCAGACCTTGGAGCATCAGCACACCAAGTACAAACGTGACAAGTTCAAGAAGACAAAGATAGGCAGCCAGGAGCATCCGATTGGGGACAAGAGTTTTCAGTGCTACGTCCGCCAGCAGTCTGAGAGCTCCACCTACTCCATCTAGCCCTGTGTACAGTTTCTATGATGCCCAGAACCAGCCGGAATATTTCCTTTACTGCAAAGAAAATCCATCTTAACAATGCTCCATTTCTAGTattcagttttaaatcttttttttttctccttaaaacaagattttaaaaaaagtcattatgGTGAGATCATTTGAGTTATTTCCAATGCAATGTATCCATTCTTCAAAGAGaatatttcactttttaaagacttttcaGGAAGCTAAGTGAAGCTGTTTCAGAAATGAGTGTCACCTGACTGGCTTATTTGTTTCGCTTTAAGGAGAATAACTTTTAAGAGTCAATACCAGACTGAACGAGCTGTGTAGATGGACTTTTTCTTTGCAGTGTCTCAAGCTGCATCACTCCAAATTTGGAGAACAGACCTCAGATCAGAACAGTTGTGGAGGAAAGGAGGGATACAAATGAAGAGATAATCATACCATACATCTATGTAGGTCTCCTGTCTGTGATGTGTGATGAAAGAAACAAGCATACGTTTTCACTGGACAGTTTTGACAGTGACCAACACGCACTTTAATCGCCTCTGAATCTATGGATGAACAAGCCTCGCAGCACACTTTCAAAAAGCTTATTTTATCTGTTTGATTTGTATTTGGTTATTTTAATTGTTGAAATGTTCCGTTGTATTTCACTTCATAAGGTAGGAAGGACTGTCATTTTTCCCTTTTTGGTAGTGTTGTccgtatgtttttttgtttttgttttttttgtccccaACCTCCTCAGGAAGGCTGTGAAGGTCGAGGGCACACAAGAAGTGATTGTTGGGACCAAGCACAGCCGGGAGCAGCTTGATGTCATCAATGTTATCTATCAATTTTATCCCTCATTTCATTATTAATCCTTATCATCAATGTGCTAACACATGTATAGGTTAAAGTTTTCACGTTTCATTTGAAGCCCTGTTCTGTTGTGGTTGGATATCATGCTCCTGTGCAGCCAGTACCTGGGTTGAAGGAATAGCTTTTTTGGAGAGTTCTTACACGGAGTCAGACAAACCCATTGATGCCTTTTTTCTGTCTTCATGGGTTTCAAGTTGCAGCTCCTCTAAAGTAAGACAAAATACACTGGATGGCTATTAAGTTAAACTCCATCTTGATCTCCATCGATGAACAAAGGATATTATATAATGTCCAACTGCGGAACCAGTTTCTGTTGGTATCAAGGCCAGATTAACCCACGAGGGGCTCAGGGTAAAATTGTGCGTGTTGTGGGCCCCTGTTAACTCCCACAATCTTGAATTGCAAATTTGTGCATAATCACAAATATATTCAGTAAAACGCATTGTGAAACCACAATATAAACAGGAAATAATATTGTGCTAACAATATCCTCTCAGCGACCACTTTATTAAGTACACCGGTACAATCTATTGCAAATCCGCTCTGTCATAAATTCAGCCTTGACAAACTTTATAATGTTTCTTTTTTGGTGACATTGTCAGAAATGTgtcaattgattttttttttttcttactgagTTCAGAGTTAAAGGTTGTGTTGTTCTGGACTACATATTATTGAGAGgtgtttctattttcttttggtCCGTATTTACATACAGTTCATGAGTTGGGCAAAATAAACACCTCTGAATATAATGCAGTTCAGAACAACCTCATCTCTAACTGTGAACTCAATAATAAACATATAACTAAATGACGCCTCTATGACAGTGTCAAAAAAACCTGAACATTATAGGCATCATTAAAGTAGACTTTatgtattggattgcattagaATGTACATGGATACATAAATTGGCCATGGAGTGTATATAGTATGAAATGTGGATAAAGgattaataaacacattttgtaaTTAAGAAAATTACAATTTTCCACATGCTGAACCTAGAGCCTTTGGGCTCCTGTAGGTCTGGGGCCCTGGGCAGTTGCCCATTTTGCCCAGTTGGTAGTCCAACCTTGGttagcatgcacacacatccaTATTGGAAACATTTCATTAATTCAGTTGCAGGTTCATATGAATGGAAAACCGTGTATTTTGCTGCTTTTAAGAGGTGCTGATATTTGTTCCTGACGTCCACTAATTGAGCCTCAGCTTGGCTAAGATCAGCATTTAACACACCCTCAAACTGCATGCAGACATATTAAAGGCATATGTATGTTTCACGCTGTGTAAGTAGAAAAAGTTGTTAAAGCCAAACTATCCCTTCAACTGTCAAACCAGAAACTACATGTTAGCACAGCTCATTAATGAGGATGGTTTTTAGTTTAACTAACATTTTACCAGTCTTGTCTGAACTTATGATTGTGAAATGATAGTTATTAGTGAGTTCGCTCTTTCTTACTTTGGAAAACTTGCGCGCCCTGTAGTTTTAAACCTATTTATATGCATTCCTCTGAGAAACTGCCTGCTGTGAATCTTACCGGTAAGCACCCCAGAATCTGTTAAAGGTACAggatttattgttattgttttgtgttgttctaCGCTTCCTAAAGGCAACCAATCGCATTGGCTTTCATATTCATCAGCGCTCACTCTTGCCAAAACCAGTACATTTGAAGAATAGTTGTAGTCACAGCGACGGTAGCCTCCACAGTCACTTCTATGCGACTACGACTGCAAACCATGACGACaaattttgtattttcaaaATCTAAGTACCTGGTTATGTAGCCTCATGGGTGTTCCCGTGATCACAGGATCCCAAACAGTGCCAGTCATCACTTTTATAGaattctctttttaaaaagcaaacaaaaaaaagtcattgttttgttatgtttttttatatatctcaAAACCTATACTGTTTTAAAAACAGACAAGCAATTATTCCGATGACATCTTTTTCTTTGTCGAATGTGTTGATTTATGAACTATAAGAAAGGTTCTCAACAGTTTGACTCTGTTTTCTATTGTCTTGTCATACAGAAATCTTGCTGTGTACCTGAATCGAAtggctgtggtgtgtgtgttttgtgcgtatgtgcgtgtttgtgtgtgtgcatttgtcagTATGTGCATGAGTGACTGACATGATGAGTTGTATTGCCAATTGAATTACCCCAGTGTTACAAGTCAGGAAAGGCAGAGTCCCACACAAAATCACTGCCTGTAATTATACTAAAGACTATAGTAGGAGTGTGGAAACACTGTTACTGTACTCTGGCCTGATATGGTGtatctcctctttcctcttgtATAGAACCACTGTTCCATGTCAAGGAACCTTTGCCAATATATTGTCCCCACTCATTTTATGTATGTATCACAGTAATAACATTGCTGAAACATTAAGAGAGCAGCGCTGCTGTAACCTCTGAACTTTGGTGAGCGTTTGTTTCCACCAGTCACTAACTCTCCTCAGGTTTATGAAACTCAGCACTGCGTGTTTTTTTGCCAAGAGCGAGGAGACTCGGACTGAAGTATTAACCACCAAACCGCTCTGTCTCTCATCCCTAACTTGGTAatcatatttgttttttcaGCAAAACGTTCCCAGAAACATCGGCTGAGTTGGATAGTACAGTAACGGCAACTCCTCCACCCCGAAGTCCACAAAAGGGATTATGCAATTATGGTGTTTCAGCATGCAATAATAGTAACAACCCCTCAAAAAGCCCATCAAATTATCAACGCACATCTGCTGACCTTTTTGCAGTGAAATTCCTCCTTGGATAAACACATACTATAAGGGAGAACAGtgtattttacaaatattttaaaagtattaaaataagCCTGTTATATATGTACATAAAACAGTTGAATGAATGGTGAaaatgtgatgtgttttttcCCCCTGAATAACTAAATGAAACCAATATTAATGCAAATGTGGTGTCTTTGTCGTTGTGTAAAACGGTGCAGTCTGCCTCCTAACCATACTGTACAGACACACATCAAAAGCTTCATTTTGTTTCAATTAGCAAAGATTTGTTTTGTAAAATTGTGTGTTTAGCTGTGGTGCAGAAACATAATATGTTTTCTTTGTGTCCATTGTTTGGGTCCAAGTTTTGCCTTTTATGAATCAATTATTCCAGAACTTTTTCACAGCATACATTTTGACATGACATACCAGGAAAAGCGCAGGTCTAATTAATAACATAAGTGAATATGCACATTCCTGGTAGGGCTTATTCGGACAAATGGAACAGAACTAATTATTGTTATTTCTTTCACCTGTGCTTTTACTTCCATGAAAAGTCCAAAATCTACAATCAATTTCAGACAAATGCCTTCTAAATGATGTCGAGCTATTTACCACTGTGGTCTATTGGCTTTTTCATAACTTCAAATGGATGTCATGTCGAATCAAATCCTTGTCCTAGTTTGTCTTGCATTTACTGCATGTATATATGCTTATGCCAGTCTGTGTAAATGCTGAAGAAAGACCACACTTATACTAGTCTTTCATTGGAACATCAGATGTGAAGAAATGTTAATAAGTTTGCACCATAGTGCATTCATTTTTAGAATATTAATTGCAGACTTTCACAACACATTATGGCACATGGGATTCAAATTGCAATGTCATTCAAGCAACCATAACATAAAGCCATGTTTTTGTGCCAAAACAATATTTTTGGTATTATTAACAAATCATGTGATTCACTGTACATAATAGTAGTGCTGAACCCACTGAGAATCAACATGTAGCCTGTACAGCAGCTTCTTTTGTCTTATTGTGGAGATACTGTATGGTTGCATTGTTCAGAAAAGTAAACTAGCATGCAGTgcagaaatactctgttacaagtaaaagtcttatTGATATAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0002574 thrombocyte differentiation biological_process
GO:0043363 nucleate erythrocyte differentiation biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38267 lncRNA downstream 238116 21246351 ~ 21246566 (-) True G28799
TU38265 lncRNA downstream 263237 21221136 ~ 21221445 (-) True G28797
TU38264 lncRNA downstream 346305 21138049 ~ 21138377 (-) True G28796
TU38261 lncRNA downstream 410778 21073550 ~ 21073904 (-) True G28793
TU38247 lncRNA downstream 608396 20876032 ~ 20876286 (-) True G28782
TU38447 lncRNA upstream 46398 21579968 ~ 21580687 (-) False LOC120555658
TU38448 lncRNA upstream 46398 21579968 ~ 21580687 (-) False LOC120555658
TU38544 lncRNA upstream 353018 21886588 ~ 21889432 (-) False gpc6a
TU38556 lncRNA upstream 610683 22144253 ~ 22144464 (-) True G29022
TU38557 lncRNA upstream 628056 22161626 ~ 22162235 (-) True G29023
XM_039794742.1 mRNA downstream 1070 21477441 ~ 21483612 (-) False pros1
XM_039794741.1 mRNA downstream 1073 21474934 ~ 21483609 (-) True pros1
XM_039794740.1 mRNA downstream 12193 21454467 ~ 21472489 (-) True gas6
XM_039796002.1 mRNA downstream 65428 21415207 ~ 21419254 (-) True LOC120556407
XM_039795986.1 mRNA downstream 104146 21374214 ~ 21380536 (-) True blzf1
XM_039794556.1 mRNA upstream 29360 21562930 ~ 21566597 (-) False LOC120555660
XM_039794555.1 mRNA upstream 29362 21562932 ~ 21568413 (-) True LOC120555660
XM_039794559.1 mRNA upstream 35679 21569249 ~ 21576211 (-) True mettl21e
XM_039794558.1 mRNA upstream 36104 21569674 ~ 21576212 (-) False mettl21e
XM_039796126.1 mRNA upstream 42741 21576311 ~ 21596317 (-) True tmco3
TU37839 other downstream 2358306 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 2358306 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 2422532 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 2764663 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 3064183 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 47472 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 1344061 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 1382284 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 1765972 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 2379785 23913355 ~ 23958933 (-) False apba2b

Expression Profile