RNA id: XM_039794555.1


Basic Information

Item Value
RNA id XM_039794555.1
length 2507
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120555660
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 21562930 ~ 21568413 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCACGGCTCTAAAAATACCCTCATGCCCTTGTGTTGATGATGGGTGTAACCAACAGGATGCTGAGACTATAACCTCAAAATCAGAGGTCTCCAGATGCATTGCTCCTGAGATCCTTCACTGGGAAATAAAGCAGCAGCAGTCCAACAGCATACAGGATTTGATATGGATACTTTGTCCACGTACTGTGTGGAGGGAACCAGTTATATGAGAAGCAGAGAGGAAggcaaggaggaggaagaaaaggaaggcgaggaggaggagaaggaagaggaggaggaagatgggGGTGAAGAagataaagaggaaaaaaaagATGAGTCAGCCGTCCAGAAGCAACAAAGACCAGCCTGGGCTCCGTGTTTCTTCTACAAAGCAGATAAAGAGGTGTACAATTACGTGGGCCAGGAGATCGTCATCAGGGGTGGTCTTGACTCCTATGCAGGCATGATATGGCCAGCGGCTCTGGCTCTCTGTCACTACCTGGACACCCATCGCGAACAGTTGAGTCTTATGGACAAGGCGGTCCTGGAGATCGGGGCAGGAACTGGCCTCCTGTCTGTTGTAGCAGCGCTCCTCGGTGCCTGGGTGACAGCCACAGACCTTCCAGAGGCCCTGAGCAACCTGAGAGCCAACCTTAACAGGAACACCAGGGGCCGCTGCAGATACGCACCCCAAGTGGCAACTCTGTCCTGGTGCGAGGACCTGGAGCGCTCCTACCCTACATCCGTCTACCGATACGACTACGTGCTGGCAGCTGATGTGGTCTACCATCACGACTTCCTGGACGAGCTCCTGGTCACCATGAAGCATTTCTGCAAACCAGGAACGACTTTGATCTGGGCCAACAAGGTGAGGTATGAGGCTGATCTGACTTTCACGGAGAAATTTAAAAAGGCTTTCCACACGAGTCTGCTGGCTGAAGACGGAGAGATGAAGATCTTCATGGCAACGTGTAGAGAGTGAGAGACGGAGAAGATATGGATGGATTACTCAATGGGCCCCTACAGGCCCAGGGACTCCTGAGTCAGAGCCTCTGTTTAAAGTTCTTAACATTACTCTTTGGGAAGTCAAAGGGCGAGTATCTGCCACCATTAAGTTTTgcatttgttgtttattttcctctCCAAATAATACAATGGCACAGTGCATTTTTAAgctatgataataataataataaatagtaaagctatttttattattttcacagTAAAATAGCTCAGCTTTAAGAAAATTCAACCTGCATCACAGGTTTCCTTTGATGGTTTCATATAATAATTGCATATTAATttgtaaaatataattaaagatTGTCCGTTTGGAACTGTAGTAGCAGGAAGGCGTGGTAGGAGTTAAGACAGCCTCTCTTCATCTCCAgcataaacaaaatgctgaattTCAGTTGCAATTTTTAGGTTTTCAACCATCACCCAAACTGTAGTTACTGCATGATAAACCTGTAAAATATCATTTTTAGTGTCAGATGCTGCTATGTAGAGAGGAGGGTCTTTTACCTGTGTGTGCTTCAGGGCCCATTATCTCGTCAtctattatattatatcatcTGTTATAAATAAAGGCTTTATGATGCTCGCAACCAGTGAGCACTACAGATGCTAAGAAGGGCAGTACAGCAAgagttttagtttagttgttGCTTGAACTtacactttttttcactttttactcCATGCCATCCTGGTCTGATACCATATTTACTACCTCGTGAAGCACCATATTTAGCCTGAATAAATCAAACCTGTGCTACATAAGGTTCAAGAATAGTTCATTAGAATCAAACCAGTTATGTCTCAGTgttaaagtaaaaacaattagttaattaattaaatgacAGGTCATCTTTTCAGTTATTTCTTTTAAGAACAAATGCCAAACGTTGGGCGGtgtcagcttctcaaatgtgttgATTTAATGCTTTTGTATTTCATATATGATAACCTCGATTCAAAAGCGCTTTTGCACGCTTCTTTTTTGGGGCAGGTGCGTTGGAAAAGGTAAAGGTTACCAGTAACACTTGCTGAAGAAGTCCCGCACATTGTCCATTACGCATGCAAATACTTcgtaaatactttattttacaaCGTTGTGAAATAAAGTATTTGCATGCGTAATGGACAGTGTGCGGGACTTCAACAATATATGATAACCTAAATATCTTTAGGTTTTGGACCACTATGGGACAAAACAGTCAATTTGAATGTGTCATGTTGGGCTGTTGGACATTTTTAAGGTAAAGAAATGTATCAGTTAATTGAGAAGATAATCTAAAGATTAATTGATAAAGAAAATAACTGATAGTTGCAGCCCTTTCTCTGCGTGTCTACATCAGTTATGAAATGTCCTGTTTCTGATAgcatgtgaatgttttttttaaaaacatttctattgtttaatacagtaaaaaaaaaaaaaaatgaagaaaacccTTGTATCTGTTAATGTCTTCTTGTACTTGACTCATTTCTGAACAAACTCTTGGCCGGCTAT

Function

GO: NA

KEGG:

id description
K21805 METTL21C; protein N-lysine methyltransferase METTL21C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38267 lncRNA downstream 316366 21246351 ~ 21246566 (-) True G28799
TU38265 lncRNA downstream 341487 21221136 ~ 21221445 (-) True G28797
TU38264 lncRNA downstream 424555 21138049 ~ 21138377 (-) True G28796
TU38261 lncRNA downstream 489028 21073550 ~ 21073904 (-) True G28793
TU38247 lncRNA downstream 686646 20876032 ~ 20876286 (-) True G28782
TU38447 lncRNA upstream 11555 21579968 ~ 21580687 (-) False LOC120555658
TU38448 lncRNA upstream 11555 21579968 ~ 21580687 (-) False LOC120555658
TU38544 lncRNA upstream 318175 21886588 ~ 21889432 (-) False gpc6a
TU38556 lncRNA upstream 575840 22144253 ~ 22144464 (-) True G29022
TU38557 lncRNA upstream 593213 22161626 ~ 22162235 (-) True G29023
XM_039794543.1 mRNA downstream 17676 21484682 ~ 21545256 (-) False rasa3
XM_039794541.1 mRNA downstream 29361 21484682 ~ 21533571 (-) False rasa3
XM_039794542.1 mRNA downstream 29362 21484682 ~ 21533570 (-) False rasa3
XM_039794540.1 mRNA downstream 29362 21484682 ~ 21533570 (-) True rasa3
XM_039794742.1 mRNA downstream 79320 21477441 ~ 21483612 (-) False pros1
XM_039794559.1 mRNA upstream 836 21569249 ~ 21576211 (-) True mettl21e
XM_039794558.1 mRNA upstream 1261 21569674 ~ 21576212 (-) False mettl21e
XM_039796126.1 mRNA upstream 7898 21576311 ~ 21596317 (-) True tmco3
XM_039794546.1 mRNA upstream 11808 21580221 ~ 21583558 (-) True LOC120555658
XM_039794544.1 mRNA upstream 58336 21626749 ~ 21634370 (-) True lamp1a
TU37839 other downstream 2436556 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other downstream 2436556 19123566 ~ 19126376 (-) False LOC120555836
TU37831 other downstream 2500782 19059755 ~ 19062150 (-) False LOC120555695
TU37697 other downstream 2842913 18719372 ~ 18720019 (-) True G28345
TU37603 other downstream 3142433 18417978 ~ 18420499 (-) True G28269
TU38446 other upstream 12629 21581042 ~ 21583498 (-) True G28933
TU38813 other upstream 1309218 22877631 ~ 22889042 (-) True G29209
TU38861 other upstream 1347441 22915854 ~ 22919554 (-) False dpep1
TU38988 other upstream 1731129 23299542 ~ 23310746 (-) False spi1b
TU39182 other upstream 2344942 23913355 ~ 23958933 (-) False apba2b

Expression Profile