RNA id: XM_039794566.1


Basic Information

Item Value
RNA id XM_039794566.1
length 1737
RNA type mRNA
GC content 0.46
exon number 7
gene id zgc:162297
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5642283 ~ 5654255 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACAGCACCGGACACCCAGGTGGCTCCACAAGACGGGACAATGAAGTTTTTGGACCTTTTTGGGCGCATAAAATCCGTGGTTATTGGGATGATTCATGTTAAAGCCTTACCAGGCACACCCCTGGGTTGTATGAAAATGTCCCAAATCACTGAAGAAGCATGCAGGGAGGCAGCCATCTACCGTGATGCAGGGATTGATGGTGTGATCATTGAGAACATGCATGATATCCCTTACTCGTTCTCTGTGGGCCCCGAGGTGTCCGCCTGCATGACTGCAGTATGCGCTGCAGTGAGAAGCATCTGTCCAGGCCTGCCGCTTGGAGTGCAAATCCTGTCTGCTGCTAACCAGCAGGCTCTGGCTGTAGCTCTGGCTTCAGGTCTTGATTTCATCAGGGCTGAGGGTTTCGTCTTCTCTCATGTGGCTGATGAGGGTCTCCTGAACGCCTGCGCCGGAGACTTGCTGAGATATCGCAAGCAGATCGGAGCCGAGCATGTGCACATCTTCACCGACATCAAAAAGAAGCACAGCTCCCATGCCCTGACATCAGACGTGAGCATCGAAGAGACGGCCCGTGCCGCAGAGTTCTTCCTCTCGGATGGACTCATCATCACGGGAGCAGCCACCGGAGTGCAGGCGGACCCGCGGGAGCTCAGAGAGGTTTCCCAGTCTGTGAGAATCCCAGTGCTGATAGGTTCTGGAGTGACCTATGACAACATCGAACGCTACCTTGATGCAAACGGGATGATCGTCGGTTCTCATTTCAAGCAGGGTGGCCACTGGGCCAATGCGGTTGACCCGGAGCAAGTGAAGAGGCTCATGGGAAAGATACGTGAGCTTcgaaaatgagagagagaggtttcCCTGTCGTCATCACCAGTGCCTTGGACATGTTTAATGACTCTACTGCCTCATTAAAACACATACAGCCACCACCTTAAGAAAAcaagactttatttatttttttgtacattttataaATACACGCAAATAGAAAAACATAATATTGAACTGTATTTACACTCGTCCAAAATGAACAATCTGTGTCTTACATGAAAAAGTGAGAACCTGTTGAAAAGTACAAAATGGGTGACCCcatacaaaacattaacagtgtatgtgtaattattttttgacaTGAATGCTGTACAGGTCACTGTGATATGAAAATGAGCTTTTATTACACTCGTCACAAAAACGTCTAAAGCTAAGGCACGGGATATAAAACATACTGAATAAAATCACGCATAATCAGTCAAAAAAACATGCCATAACACCGTGATCCAACTGCATCATAGTTCACTCATTTCAAGCAATTTTTTTGGATCAGTGTCGCACAGTAAAAACACTTTTAGAATAACTTTCACACACCTCCAACTTCCTATAACCCCTATTCCTACTAATATCTAATCACTCAAACCACTCAACTGTTCATAATGTACAAAAGGCTTTTATTTGAAAGTAACGGTGCATTACTAATGCTTTCCAACCTGAGGGACCGACCGTGTCAATCATGAGGAGGGAGATCAGGAGATCGAGATTCAGTGTTCTCGGGGGTTTCAGATGCAAGGGGTGCAGTACAGGTTGCCTGTATTCAAATCAAAATAaacacttgtgtgtgtgcggttcATTTGTCCGATGTTTGATCATTTTACTGCACCGGAATAGGCGAATCTCACATGCTTTGCCTTGGGATATACAGCGTTAACTGTGCGAGGTGAaacaattgcaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34339 lncRNA upstream 9525 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 751559 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 805288 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 960085 4682124 ~ 4682470 (+) True G25541
TU34229 lncRNA upstream 1195641 4446595 ~ 4446914 (+) True G25498
TU34365 lncRNA downstream 20111 5674366 ~ 5675988 (+) True G25611
TU34421 lncRNA downstream 208404 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 238466 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 256974 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 381201 6035456 ~ 6035789 (+) True G25709
XM_039795585.1 mRNA upstream 805270 4793815 ~ 4837285 (+) False tshz3b
XM_039794571.1 mRNA downstream 5225 5659480 ~ 5672023 (+) False LOC120555666
XM_039794570.1 mRNA downstream 9464 5663719 ~ 5672023 (+) True LOC120555666
XM_039796036.1 mRNA downstream 79035 5733290 ~ 5758249 (+) True LOC120556426
XM_039796037.1 mRNA downstream 110288 5764543 ~ 5804822 (+) True LOC120556427
XM_039795269.1 mRNA downstream 161779 5816034 ~ 5854489 (+) True LOC120555999
TU34243 other upstream 1066910 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1857013 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3559236 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3799744 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 379954 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 397632 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 398560 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 610719 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 632793 6287048 ~ 6288077 (+) True G25743

Expression Profile