RNA id: XM_039794570.1


Basic Information

Item Value
RNA id XM_039794570.1
length 1310
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120555666
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 5659480 ~ 5672023 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGTGGAAGTGGGGCGACTGCCAATCAATCCGGGTCCTTCCATCCGTCATATCCAGAGTTTGAGAAAAGCCGAACGCACGCGAAATCAAAAACTACCGATTTGCTTGGCACATTTAGGACAGGACTGAAGGGGTCTCAATGCAGGGATGGCTCCACGGATGGATGATGTCATGCGTCTGTGCTGTGAATTATCAGCTCACGATCAGATCAAGGTGGCTGTGAAAAGCTCCACCAAAGGAGCCATGGTGGCAGGAGGAACTGCCTTCGTAGGCGGGCTGCTCGGTGGGCCTCCGGGCATTGCAGTTGGGGGAGCAGTAGGAGGTCTGCTGGGCAGCTGGCTGACCAGCGGCCAGTTCCGGCCTCTGTTTCAGATCCTGATGGAGATGCCCCCCGCCCAGCAACAGAAGCTCTGCGACCACATCCAGACCGTCCTGGGGAACCTGAGCTGGATGGACGCGGCCCAGCTCATCTCCCTGGTGATGGGCAACGCCACTCTGCAGCAGCAGGTCACCGCCGCGCTGGTCAGCTACATCACACAGGAACTCAAAGCAGAGGTGCGCTATCAAGACTGAGTTCCAGTTCCACACAGacttcatatatttttttttcaggatgGTCCGGCCTGCCAAACACAACCAGAGTCCTCTGCGACAGGTTTTTGTACTCCATTGGAAAAACGGAATCATGGATGTTTTACTTTCTCAACTGGGGCAAATGGAGAAGTTAGCCTTTGCTATTTTCAGAGTGTGGAATGTAACCAGGTACAttcactcaagtactgtattaagtacaatatatatttatttggcagaatcagatttataaatacaaaatttaaatcaactaataaattaTGAGCTATCATTATATGTtaagctacccagcagtatatcTGTTATCCTTTATCTGCTGTAATATTAGAGATGCTTACGCAGTAATGAACCGCCAATTATAATCCAGTGATATTATAGATATTGTTCTGAAAGAGTACTTTAACTATCGGTATTTTggtagtttattttaatttcaatacttcagtaaaagatctgagtacCTTATCCACCACTGCCTTAACATGAAAGAAATCACAGTCCCCATAGAAAGCTATCTGCGTTACTCAATCATGAataaatactgacattagcaccAATTATGTTTTGTACAACAGATGCCAAATTtcctctgttgttttttttaactctgtaAAATATCGTGCCTCTGGATCTCCTTATTCCCACACTCTGTATCAGCATGTTTTAATGTACATCTGCTTAGGAACTTCAAATAAAGTACACTTTTTTTCAGCAA

Function

GO: NA

KEGG:

id description
K23168 MPAN; protein MPAN

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34339 lncRNA upstream 30689 5630664 ~ 5633030 (+) True G25593
TU34302 lncRNA upstream 772723 4890727 ~ 4890996 (+) True G25567
TU34285 lncRNA upstream 826452 4836611 ~ 4837267 (+) False tshz3b
TU34276 lncRNA upstream 981249 4682124 ~ 4682470 (+) True G25541
TU34229 lncRNA upstream 1216805 4446595 ~ 4446914 (+) True G25498
TU34365 lncRNA downstream 2343 5674366 ~ 5675988 (+) True G25611
TU34421 lncRNA downstream 190636 5862659 ~ 5862867 (+) True G25663
TU34433 lncRNA downstream 220698 5892721 ~ 5893025 (+) True G25673
TU34435 lncRNA downstream 239206 5911229 ~ 5912453 (+) True G25675
TU34492 lncRNA downstream 363433 6035456 ~ 6035789 (+) True G25709
XM_039794564.1 mRNA upstream 9464 5642283 ~ 5654255 (+) False zgc:162297
XM_039794566.1 mRNA upstream 9464 5642555 ~ 5654255 (+) False zgc:162297
XM_039794563.1 mRNA upstream 9464 5643148 ~ 5654255 (+) True zgc:162297
XM_039794565.1 mRNA upstream 9464 5643512 ~ 5654255 (+) False zgc:162297
XM_039795584.1 mRNA upstream 826434 4795836 ~ 4837285 (+) False tshz3b
XM_039796036.1 mRNA downstream 61267 5733290 ~ 5758249 (+) True LOC120556426
XM_039796037.1 mRNA downstream 92520 5764543 ~ 5804822 (+) True LOC120556427
XM_039795269.1 mRNA downstream 144011 5816034 ~ 5854489 (+) True LOC120555999
XM_039795538.1 mRNA downstream 197032 5869055 ~ 5884023 (+) True zgc:153993
XM_039795087.1 mRNA downstream 245533 5917556 ~ 6021420 (+) False ano1a
TU34243 other upstream 1088074 4570373 ~ 4575645 (+) True G25512
TU34144 other upstream 1878177 3784933 ~ 3785542 (+) True G25431
TU33868 other upstream 3580400 2081958 ~ 2083319 (+) True G25204
TU33826 other upstream 3820908 1839333 ~ 1842811 (+) True G25173
TU34491 other downstream 362186 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 379864 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 380792 6052815 ~ 6052897 (+) True trnal-uaa_1
TU34539 other downstream 592951 6264974 ~ 6266708 (+) True LOC120555541
TU34546 other downstream 615025 6287048 ~ 6288077 (+) True G25743

Expression Profile