RNA id: XM_039794581.1


Basic Information

Item Value
RNA id XM_039794581.1
length 2427
RNA type mRNA
GC content 0.50
exon number 6
gene id lins1
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9632007 ~ 9642958 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagaagagcagctgcagcagcagcagcagcagcagcagtagccgCCGCCACaacaccatagacagtatatgacTTTAACTACTGTTGTTTAATTACTATTAATAGTAACAGTCTGTGGTTTCACACGGAAGAGGCAGAACCATGGAACACTCAGCGAGCTGCAGAGACCTCTCCACCATGAGAGAGCGCTTTGACTGTCTGACAGAGGCGTACGCATGTTTTCTGATGGGAACATGCCCCAGCCAATGTGTGGCCTGCGTGATATTTTCCGGACTGGTCCCCGGCGAGGTCAGAGAGTGTGCTCCTTCCGAGAATCGCCGTGTGAACAGCGCGGAGCTGAGCTACATCAGTGTGACTCTGGTGGAGAAGATTACCTCCAACCTGACGTCTCGCAGCCTGTCTCCAGCAGTCACCTTATACTGCGTGGAGATGCTGACGGTGTTGTTTCAAGACATGGATCTCATGTCACTACTTATGCAGCAGTTCCAGGCTGAGGACCAGATTATCTCACACCTGGCTGCAAAGACTGTATCAACGTGGGTGctctatcagctccacaaatcTGGTACAGTCAGTCCTGTCTGGCAGAAGAAGTGTGTGCAGGCATTTTACATCTCACTCCCCGGTCCCGAATTGGACACATGTCTGTGGTCACTGAATGAAGTCTTAAAACAACTTCTTAAAGGAGCTCATCGAGAAATCCTTGGGAAACTTCTGGCAGCTTTTGACTCCAGCCTAAGTACTCTATGTTCAAAGTTTCTCCCTAAGGAGAGAGACAAGACAACGCAGTGTTTGGTGGAtcttcccagcagcagcagcggacGCTGGGGAACAACCTTCTGCCTCCTGCTGgacctgctggagctgctgacTGCATGCAGTGTGATATGTGGAGCTGGCATCTGTCTGGAGAGTCCGAGAATGACCTATGTTCACTCCTCAGCGCTCCTGATGACAATCAGCTGCTCCTCAGAGTATTTTGTCAAAAAGCGAGCGCTGCTGCTTCTGAAGAGAGCCGTTCTTCAGAAGGCCGGAGAGGATTGGTCTTTAGGAGAAGTGCTGCTCACTGGGCTGAAACACAAGCACTTCGACGCGGATATGAGTGTGCTGTCTCAGAGTGTGTTAACAGCCATGGCTACTGATTGGTTACACAGTGTTCAAGTGGAGTCTTCCTCATTCTTTGGGGGGACCAGATGCATCAGAGGGAAAGAAGGTCAGAAACCAGACTGTGTGATGCTGAGAGCTGTCAGCCTGCTTCTTCTCAAGTCCATGGAGCTTCACATACAAACAGCTGGGGGAACAGCAGGGGTAGACAGTGCCACCGAGGTTTCTGGGTATCTGCAGAGTCTGTGGGGTTTCCTGAGGCGGTGCAGTGTCCAGCTGACAGAGAACACTCATCGGTGCTGCTGGGTCAGCCTGCTGTTTGGAGAACAGGACGACGACATGATGGAGACCGCCAAAGCTTTGTTTTCCATATTTCTCCATCACAGAATGTGTTCTGGGCTGGATGACTTTGCTGTGTTGGAGGCGGCCTGTGCCTCTGGCTGCAACCCTCACTGCCActtcctgctgctgcttcagagcATCTCCTTCGACCACAGCATCCTCCTGGACTTCCTCATTTCCATTGAAACCTGCTTCCTGGAGTACTTTGTGCGATACCTCAAGTTCCTGCGAGCAGATTGGCAGGGTTTCACTGCAGCGTGCGGAAGAATCAGCTCGCCACATTTTCATCTCTCACTGCAGCAGTCTGTTACTGCCTTATGTGCTGCTGATACTTTAAAGGTGACGTGCAAAGGTGAGCCAGATCGGGTTAAATTCAGCTCCTGTGCCCAGTCCACAGGTGTAACTTCACAAGTGGGAAGGGTCAGTTTGGCTGCTGGTTTTCACCTGGTAGAGTATGATAGTTCTGACGAGTCTGATCCAGAGAACATGGAGGTATCTCAGGATGAACCAGCGGCGTCTGTATGTGACAAAAGTACATTTAGTGCCTTGGATGTGAAACAAGAGATCAGTGGACCACCAGTACCTATCAGGCAGAAACAATATGAGGCATCTGACTCAACAGGATTACTGAGTCGACCTAACTCCACTCTGGAAAGAAGAGCAGAAGGGCCATCCCTGCTGGTGTTGCAGAGTGAGCAAACATCCGGTCCAAACATGGCGCCTCAGCCGGGACAGGAGGCCTGGGAAACATTAGCCAGAGCAGTCATCTGTATGTCAGAGCTCAGAGAGGTGGTGACCAGGCTGCAGACAAATAAACTCTTCCCATACAACCCATCTTCACTCCTGAAGCTCTTAGCACAAGTAGAGAACTGTTCCAAGCTATCGCATCTCTTACATTTCAATAAATGATAAAGATGTATAATATGTTTTGTGAAGTGGTTTGGAAGCTAAATTAAAATGGTCCAGTGTTTTAAGTTACTA

Function

GO: NA

KEGG:

id description
K22533 LINS1; protein Lines

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35243 lncRNA upstream 23010 9606743 ~ 9608997 (+) True G26347
TU35228 lncRNA upstream 158907 9460917 ~ 9473100 (+) True G26335
TU35205 lncRNA upstream 283682 9333230 ~ 9348325 (+) True cers3a
TU35185 lncRNA upstream 331800 9299488 ~ 9300207 (+) True G26297
TU35161 lncRNA upstream 387554 9240665 ~ 9244453 (+) True G26276
TU35268 lncRNA downstream 10626 9653584 ~ 9655329 (+) False asb7
TU35279 lncRNA downstream 79265 9722223 ~ 9722683 (+) True G26367
TU35280 lncRNA downstream 84234 9727192 ~ 9727740 (+) True G26368
TU35303 lncRNA downstream 103179 9746137 ~ 9791753 (+) True G26386
TU35308 lncRNA downstream 151011 9793969 ~ 9794192 (+) True G26391
XM_039795147.1 mRNA upstream 27545 9391108 ~ 9604462 (+) True adamts17
XM_039795961.1 mRNA upstream 253396 9333229 ~ 9378611 (+) False cers3a
XM_039795962.1 mRNA upstream 253396 9333229 ~ 9378611 (+) False cers3a
XM_039796102.1 mRNA upstream 335290 9261211 ~ 9296717 (+) True LOC120556464
XM_039795212.1 mRNA upstream 540497 9056333 ~ 9091510 (+) True abhd17c
XM_039794585.1 mRNA downstream 10620 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA downstream 11655 9654613 ~ 9677027 (+) False asb7
XM_039794584.1 mRNA downstream 16441 9659399 ~ 9677027 (+) True asb7
XM_039795993.1 mRNA downstream 171739 9814697 ~ 9858684 (+) False aldh1a3
XM_039794699.1 mRNA downstream 218194 9861152 ~ 10096639 (+) False lrrk1
TU35242 other upstream 27571 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 476664 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 871706 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3342231 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 3342231 6289056 ~ 6289776 (+) False LOC120555541
TU35313 other downstream 204319 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 2388663 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3466799 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3592277 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5798519 15441477 ~ 15446392 (+) False LOC120556433

Expression Profile