RNA id: XM_039794587.1


Basic Information

Item Value
RNA id XM_039794587.1
length 4757
RNA type mRNA
GC content 0.49
exon number 31
gene id phkb
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 2039463 ~ 2182754 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGACACAGTAGTGTAAACATGGCGAGCCTAGCAGATGTCGGCTGGAAACTCCTGGAATTCAAAGCCCGAGCAAAAAGATCAGGTTCCATCTATGAACCTCTCAAGCTGTCCACTCTCCAGCGTGACGATGAGCCTCTATGGGAGAAGCTGGACCGCTACTACGATGCCGTCAAGACAACCATTCTGAACTACCAGAGTCCCACCACCGGCCTTTTCCCTGTCAAAACATGCTCCACCTGCAAGGAGGCCAAGGTCCGGGACTCCCTCTACTGTGCTGCCAGCGCCTGGGCCCTGGCTATGGCCTACCGACGCATTGATGACGATATGGGGCGAACCCATGAATTGGAGCATTCTGCCATCAAGTGCATGAGAGGGATCCTCTACTGCTACATGAGGCAGGCTGATAAGGTGGAGCAGTTTAAACAAGATCCCAGCCCCTCCAAGTGTCTGCACTCTGTGTTTAACGTAGACACCGGTGACGAGGTTCACTCCTACGCTGACTACCACCACCTGCAGATCGATGCCGTTTCTCTGTTTCTGCTGTACCTGGTGGAGATGATCTGCTCTGGTCTGCAGATCATTTACAACACAGATGAGGTTTCCTTCATCCAGAACCTGGTGTTCTGTGTGGAAAGGGCCTACAGGGTGCCTGACTACGGCATGTGGGAGAGAGGCAGCAAATACAACAACGGCAGCACTGAGCTGCATTCCAGCTCTGTGGGCCTGGCTAAAGCTGCTCTGGAGGCCATCAATGGATTCAACCTGTTTGGAAACCAGGGCTGTTCCTGGTCGGTGATATTTGTGGATCTGGACGCCCACAACAGGAACAGACAAACGCTGTGCTCCCTACTGCCCCGAGAGTCTCGCTCACATAACACAGATGCAGCCTTGCTTCCAACCATCAGCTATCCTGCGTTTGCAGTAGATGACGATGCCCTCTACAGTCAGACGCTGGACAAGATTGTCCGCAAGCTGCGGGGCAAATACGGCTTCAAACGTTTCCTCCGTGATGGCTACCGCACCACTAACGAAGACAAGAATCGCCGCTTCTACAAACCTGCTGAAATGAAGCTTTTTGATGGAATCGAGTGCGAGTTTCCCATATTTTTCATCCACATGATGATTGACGGGGTGTTCAGAGGAAATAAAGCTCAGGTCAAAGAATACCAGGACCTCCTTCAACCCATCATCTTCCTGTCTAATGAGGGCCATGCTGTGATCCCCAAATACTACTATGTACCGGCTGACTTTGTGGAAGCGGAGCAGAACAAGCATGGAAGCCAGAAGCGTTTCCCTAGCAACTCTGGCCGTGATGGGATGTTCTTCCTGTGTGGTCAGGCCCTTTACAACATCGCCATGCTGCTGGTGGATGAGCTGATCAGCCCTAAAGATATTGATCCCGTCCACCGGTACGTTCCCTACCAGGATCAGCGCAACGTCAGCATGCGATACTCCAATCAGGGTCCCATAGACAATGATGTTGTGATTCATGTGGCCCTGATTGCAGAGAGCCAGAGacttcAGGTGTTTTTGAACACCTATGGCATTCAGACCCAGACGCCCCAGCAGGTGGAGCCCATCCAGATCTGGCCTCAGAAGGAACTGGTCAAGGCATACCGTTTCCTTGCCATCAATAAGAAGCTGGGGTTGAGTGGGCGTCCAGAGAGGCCAGTGGGCTGCATCGGCACATGCAAGATTTATCGTATCCTGGGCAAGACGGTGGTGTGCTACCCAATAGTGTTTGATCTAAGTGACTTTTACTTGTCCCAAGATGTCATGCTGCTGATTGATGACATTAAGaacgCCCTGCAGTTCATCAAACAGTGCTGGAAGATGCAGGGACGTCCTCTCTTCCTGGTTCTCATTCGCGAGGATAACATCAAGGGGAGCCGCTTCAACCCAGTCCTGGACATGCTGGCCTCGTTCAAGAAAGGCAACATCGGAGGGGTCAAAGTTCATGTCGACAGACTTCAGACGCTGATATCTGGAGCAGTGGTGGAGCAGTTGGACTTCCTGCGTGTCAACGAGGCGGAGATCCCTGAGTTTAAGAGCTTTGAGGAGCTGGAGCTGCCGAAGCACTCCAAGGTAAAGAGACAGACAAGCACGCCCAACGCCTCCGACCTGGAGCAGCAGCCAGAGATCAATGTGGACGAGTGGCTGCAGAAGCCCACCAATGAGATCATCCAGAAGTTCCACGACTGCGACTGCTTGGCCAGTCAGGCTCAGCTTGCAGCCATCCTTCTTAGGAGGGAAGGACCAGACTTCCTTGCCAAAGATGAGAACCTGAGGGATGAACTGGAGAGACTTTACAGAAGAGCTGGCAGCAGAAAGCTTTGGTCTGTTGTCCGTCTTGCTGCCAGTCTCTTAACTAAGATAGTGGACAGCCTTGCCCCCAGTATTACTAGTGTTTTAGTGCATGGCAAGCAGGTGACCCTCGGCCTATTCGGGCAAGAGGAGGAGGTGATCTCCAACCCGCTGTCGCCAGGGGTGATCCAGGGCATCATCTACAGCAAGTGCTCCCCTCAGGGTGGGGAGCGGGAGGCCGTTCTGCAGCAGGAGCTGGTCATCCATATCGGATGGATTATCTCCAACACCCCGGAGCTGTTCAGCGGCATGCTCAAGATCAGAGTCGGATGGATTGTCCAGGCCATGAAACATGAGCTGAAGATCCGGGCGGGAGACATGCCCCCCCAGGACATCTACCAGCTGTCCCCCAGCGACATCAAGCAGCTCCTGCTGGACGTCCTGCAGCCACAACACACCGGCAGGTCTTGGCTGAACAGGCGTCAGATCGATGGCTCTCTGAACAGAACCCCTCTGGGCTTTCATGATCGTGTGTGGCAGATCCTGGAGAGGACCCCCAACGGTTTTACGGTGGCTGGGACTTACCTCCCACAGcaacCGACACTGTCTGACATGACCATGTATGAGATGAACTTCTCCCTGCTGGTGGAGGACACGCTGAAGAAAATCGTCCTGCCTGAGTACAGACAAATCATAGTAGAGCTGCTGATGGTGGTGTCCATCGTGCTGGAGAGAAACCCGGAGCTGGAGTTCAGCGACAAGGTGGATCTGGACGATCTGGTCAAGCAAGCCTTTAATGATTTCCAGAGGGATCGCAGCCGCTTGGAAGGCATAGAGAAACAGGATGGCATGGAGGCATTCTACAACACCCCACCGCTGGGAAAGAGAGGCACCTCCAGCTACCTGACCAAGGCTGTTATGATCCTTATGCTGCAGGGGGATGTCAAGCCCTGCAAGGACGACCCGTGCTCTGTTAGCTAGATTTACAACGCTTTGACCCCTAAGCCGGGCCTGCTGCAGTGTAGTCTTTAAATGGTCCGGCAAGGTCTACTGAGTATCCATCACATGTATTCAGAAGATAACCTCTAACCTCTGCTATCCTCCCTGCAGCAGGACTCTGCCCACTCCTGAAAGCTACATTTCCCCTGTCCTTTGCCCTTAACAGCTACAGAAGCTGTAAGCAGAAGCCTCGGTTGGTGTAGATGAGCATGTCTGCAGTTTGCTCCAGTcgttaaccctcgtgttgtcttcccgtagaccgagaacttgttgtccttctgggtcaaaattgcaaattaactttttttggctctttttccAACGTTCTTTGACGCTTTTtgaaacgtttttgtcacttttttcaacgcttttttaaatacatggtcaataaaaataatttaaatgacataatatctattttttttgtagaaattgtggattattttgactaatagttaagatctgAGGATGTTGCGTGGATCACAGTTTATTTCAAATGATAtaaaattgaaagaaaaaaaaaaaacacaattcaatgaaagtaatcattcattttacctgcCAAGAATGGCTTCCATACAACGTATATCCACGcattcatgttattttggggcaatttgattcaaagaaacccataattctgatataaaaatgggtcaaatttgacccaaggacaacacaagggttaaaatacATCCAAAATACATGTTTAATATGTTAAGATTTGGGGGAAATACTCATTATCATCAGGTCCTTGTTGATTTTTCCTCTACACATTTTTGTGCAGTATCCTAACTGTGCTTTTAATAGAGTCACCGTGATTTGCTCtagttatttttagtttttaccaTTGGTGGCTAGTCATGTCAGACGACACATAACTAGCTAATCACATACCGTAACTAGCGAGCTGTGCGGTTATCCTTTACCTTGATGCTGTAGATTAGCATGTCTGCACTTTGTTCCAAGggttaatatactgtatgtccacCAGTTGTGCTTAACTCACTACCACCTATAGAACCTTGCCCATCTTGTTGTTGCCAGAGTTCAGTCTCCCAGCTGTGTAGTGTATTCAAACTCAAAAGTGTTGTTCATTTCCACAGCTGGCTAGCTATGTTAAAATGGCACCCAGCACCTATCTACTGTTATCCTGCCATTTCTccaaaaatacttattttcttaaaaaaaatattcgaaataaaactaattgaagAAACAAATTACACTGGTGATAATAGTTTGGGGTTAGCTtattttagcttagcataaacatTGAAAACGGGGGGGAAGCTAACCTGGCTCTGTGCAAAGGTAAAATGTTATGCTAaattaagctaagctaacaggctgctggctgtagcttaaTTTTTAGCATGCAGACTTGAGAGCTGTGTTAATCTTCTCATCTCATGCTCTGTAACAAAGCAAatcagcatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33792 lncRNA upstream 265024 1769282 ~ 1774440 (+) True G25144
TU33634 lncRNA upstream 623717 1413095 ~ 1415747 (+) True G25008
TU33637 lncRNA upstream 653200 1386048 ~ 1386264 (+) True G25011
TU33613 lncRNA upstream 736512 1302719 ~ 1302952 (+) True G24991
TU33606 lncRNA upstream 780648 1258519 ~ 1258816 (+) True G24984
TU33862 lncRNA downstream 52 2182806 ~ 2183770 (+) True G25203
TU33866 lncRNA downstream 52 2182806 ~ 2183770 (+) False G25203
TU33885 lncRNA downstream 32493 2215247 ~ 2215548 (+) True G25220
TU33890 lncRNA downstream 128850 2311604 ~ 2312082 (+) False adamts18
TU33891 lncRNA downstream 128850 2311604 ~ 2312157 (+) False adamts18
XM_039795363.1 mRNA upstream 221470 1789953 ~ 1817994 (+) True slc7a10a
XM_039795404.1 mRNA upstream 341105 1674741 ~ 1698359 (+) True zgc:165481
XM_039796055.1 mRNA upstream 654389 1378010 ~ 1385075 (+) True LOC120556440
XM_039796056.1 mRNA upstream 654389 1378010 ~ 1385075 (+) False LOC120556440
XM_039795697.1 mRNA upstream 674738 1312448 ~ 1364726 (+) True LOC120556244
XM_039795089.1 mRNA downstream 57660 2240414 ~ 2312096 (+) True adamts18
XM_039795027.1 mRNA downstream 1041115 3223869 ~ 3236019 (+) True LOC120555875
XM_039795613.1 mRNA downstream 1067854 3250608 ~ 3273178 (+) False adgrg1
XM_039795611.1 mRNA downstream 1067855 3250609 ~ 3273178 (+) True adgrg1
XM_039795612.1 mRNA downstream 1067855 3250609 ~ 3273178 (+) False adgrg1
TU33826 other upstream 196653 1839333 ~ 1842811 (+) True G25173
TU34144 other downstream 1602179 3784933 ~ 3785542 (+) True G25431
TU34243 other downstream 2387619 4570373 ~ 4575645 (+) True G25512
TU34491 other downstream 3851455 6034209 ~ 6035193 (+) True G25708
unassigned_transcript_138 other downstream 3869133 6051887 ~ 6051969 (+) True trnal-uaa
unassigned_transcript_139 other downstream 3870061 6052815 ~ 6052897 (+) True trnal-uaa_1

Expression Profile