RNA id: XM_039794605.1


Basic Information

Item Value
RNA id XM_039794605.1
length 3610
RNA type mRNA
GC content 0.46
exon number 15
gene id celf1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 11387677 ~ 11463360 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagactgcCATTTTACACAGCTAGCTAGCGAAATGTCTGAAGTGACAGACCACAAGTTACTCACCTATGTAGCTAGTAGTCGGCTTGTCTCCAAAAGTACAGCATGATTAACGATATATCCTAAGCAAACATCCAAAACGACATTTTGTTTTAAGCACAAGTCATATTAACAGTGGCGTAAAAACACGGTTGTATTACAAGGCCCTGATGGATAGCCTGGAGCCTGAAACCCTGTATGTGTCTCCAGAGCAGACTGGACAGCCCACACTCCCCCTTCCTTCCTCAGAAGTCTCCAACTTGGCACTCGGGGGTGGGAAGAAGATGAATGGTTCTCTggaccaccccgaccaaccagATGTTGATGCCATTAAGATGTTCGTAGGACAGATTCCACGGTCCTGGTCTGAAGAGCAGCTTCGTGAGCTGTTTGAGCCTTATGGAGCAGTGTATGAGATAAATGTTCTCCGAGACCGCAGCCAGAATCCCCCACAGAGCAAAGGCTGCTGTTTTATAACGTACTACACTCGCAAATCAGCCTTGGAAGCACAGAATGCTCTGCACAACATGAAGATTCTGCCAGGGATGCACCACCCAATACAGATGAAGCCAGCTGACAGTGAGAAAAACAATGCAGTGGAGGACAGGAAGCTGTTTATTGGAATGATCTCCAAAAAGTGTAACGAGAATGACATCCGACTGATGTTCTCACCATACGGACAGATAGAGGAGTGCCGGATACTTCGAGGCCCTGATGGACTCAGCCGTGgTTGTGCATTTGTGACATTCACAGCGAGACAAATGGCCCAGTCAGCCATCAAGTCCATGCACCAGTCTCAGACCATGGAGGGCTGTTCATCGCCTATTGTGGTGAAGTTTGCGGACACTCAGAAGGACAAGGAGCAGAAACGCATGGCCCAACAACTGCAGCAGCAAATGCAGCAACTCAGTGCTGCTTCCATGTGGGGAAATCTCACTGGGCTCAACAGCCTGGGGCCACAGTACCTAGCACTCTACTTACAGTTGCTGCAGCAGTCAGCCTCCACGGGTAATGCACTCAACAACTTGCACCCTGTTTCAggtcTTAATGCCATGCAGAACCTGGCTGCTTTAGCAGCAGCTGCAACTGCCACACAGGCCACTCCTACAGGCTCCAGCGCCATGACAACATCTAGTAGCCCACTAAGTGCACTAACAAGCTCAGGCTCCTCTCCCACCTCCAGCAGCAGCTCATCAGTGAACCCCATGGCTTCTCTCGGGGCCCTGCAGTCTCTGGCTGCTGGTGCTGGAGCAGGCCTCAACATGGGCTCCCTGGCAGGCATGGCAGCACTGAATGGCAGCCTTGGCTCTGGAGGCCTGTCTAATGGCTCAGGAAACACCATGGAGGCACTGAGCCAGGCCTACTCAGGCATCCAGCAGTATGCTGCTGCCACCCTTCCCAGCCTGTACAACCAGAGCCTGCTCTCCCAGCAGAATGTCTCAGCTGCAGGCAGCCAAAAGGAAGCCAGCGACAGTCGCAGCTCCGGTCCAGAAGGTGCCAATTTGTTCATTTACCACCTGCCTCAGGAGTTTGGAGACCAGGACCTGCTTCAGATGTTTATGCCCTTTGGAAATGTCATCTCTGCTAAAGTCTTCAttgacaaacagacaaacctCAGCAAGTGTTTTGGCTTTGTGAGCTATGACAACCCTGTGTCATCACAGGCAGCCATCCAGTCAATGAATGGTTTCCAGATCGGGATGAAGAGGCTGAAGGTGCAGCTGAAGCGTTCAAAGAATGACAGCAAGCCTTACTGAAGGTGCTGAGGCACTGCAGACTTAGTTAGGCAGGGTGGTGTTATGGTAAGTGGAGTATGAATAACCAAGACTGGTCCACTCAGAAACTAGTCTATGCATTACAGGGTGATGTCTGCTGCGCTGCCTCTTCTGCTCATTTTAACACATGAGCTTAAAGCTACATGCCAGATTTTCCAGGCTAGACTGGGTTCTTCCTGTGTTATGTTGTGGTTTATGCACTTTGTCCTTTGAACAAACAAGAAAACAGGTGTCTTTTCATTTAAGTTGAAATGTTTGCTGTGGTACATAATACACATATGAGTTAATTGTTAGGTTGTGTTGCACATTGACAGTCAGGTCACATAGGTGCCAAATCCTTCTTGTTCCCCTTTCCCCTCCACCACTCACACCCATCAGGCAGCAGCTGGAAAAAGACAGAGCCACATATGATTAGGCAGCAGAAATCATTACCAggttttatttgacattttcacaAACCAAATGGGTGGTTGTCCCTACTTTCGTATTAGATATCTGTATTAACTCTTGAAATGGAGCCAATGCATGTGATATACACCTAAATGAGTAGTAGGTACAGAAGTGTCTGTTGTTTACCAGGAAGAGCTCCACTTAAAACATGCACATTGCATCTAGACTATTTGTCCTCATTCTGCatttgtaaagtgtgtgtgttggtgcgaGCGTGCATGCGTGTTGTGAGGGCAGAGTCTAGATCAGCGACTGTGTGAACATCTTGGTGTTTCCACTCTGAGCTAAAGTCACTGAAGTCAGGTTTAACCTCCTTGTTGCTAGAGGGAGAAAGGAGTCTGCCACCGGTTTCTGAGCTACATCTAAAGATGACACATTAATGCTTGTTTAAATGGGACTTGTCTGTCTGCTGCAGCTGTTGCATGGCTTACACTTATCAAGTGGCCTCAGGTGGATGGCTGCACATTTGGGTATGGGTTGTGTTGTATACAAACATTGGCTGGAATTGATTTCTGTATGACATGAATATAATACGTCTGTCATTTcttgtatttttctttatgtGGAGGTTAGTAAGACATGTTTCTAATGCAGTTCAAATTGCATTAAGTATAGACATTTTTAGAGAACTAAACACAGCATGTTTCAGCTATAAGAGGCATCAATACAAACCAAACACCACAGGCTCGTTTCACTCATCTGCCTGATGCAGATAGAATGCTTTGTATAATACATGTTATGGTTTTAGCTGGTTTTTACCTTGAATCCAGGTGTTTGGTAAAAATTCATCAACATCCCTCAGCTACTGTCCTGCTAGCTAGCGGCTAGCTGATCTCTTGAGGGCTACACCACTGTGTCTCTCACTGAATCTCTTCTGTGATTGGACAATTCATATATGTGTCAATTGCTCAAGGCAAACCTGTCAGTTGCTTAGACTTGCaagaaatcatgttttttttttatagaactAGATGTATATTTAAACTATTATgccttttctatttttatataggTTTTATACTTCCCCTGTGTGTTGGGGAACTATTTATTGCCTAAATTATTTTACTGAATTGAAATTATTTTGAAAGACAAATGTAAAGTCCAACAACTCCATTTGATCTCCTGATGTGTGTCCTCTCCTTGCCTGTTTTGGTGATGTGTACTACGTGTCTGTGTGGCATGGCTGTGTGTGTAGGATCCATCATAAAACCCCTCCCTGTCATACATGCCTTCATCTGAATAAATCACtaattttccaaaaacacaGGGAGCATAGTTTATTCTAGAAGTCAATttcaaaatgtgtctgtttgtcctgTCTTTCTATGTGAATAAATAGTGACTTTA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35726 lncRNA downstream 45167 11345628 ~ 11345871 (-) True G26750
TU35713 lncRNA downstream 164626 11225218 ~ 11226412 (-) True G26737
XR_005638732.1 lncRNA downstream 207214 11183133 ~ 11183824 (-) True LOC120555566
XR_005638813.1 lncRNA downstream 223734 11165880 ~ 11167304 (-) True LOC120556158
TU35664 lncRNA downstream 251713 11138734 ~ 11139325 (-) True G26693
TU35770 lncRNA upstream 7420 11470780 ~ 11471227 (-) True G26785
TU35796 lncRNA upstream 96208 11559568 ~ 11559895 (-) True G26802
TU35798 lncRNA upstream 100862 11564222 ~ 11564551 (-) True G26804
TU35799 lncRNA upstream 101324 11564684 ~ 11565380 (-) True G26805
TU35800 lncRNA upstream 102902 11566262 ~ 11566625 (-) True G26806
XM_039794601.1 mRNA downstream 6667 11383500 ~ 11384371 (-) True LOC120555675
XM_039795299.1 mRNA downstream 99508 11245752 ~ 11291530 (-) True LOC120556010
XM_039794209.1 mRNA downstream 170096 11207540 ~ 11220942 (-) True LOC120555500
XM_039795097.1 mRNA downstream 601270 10766177 ~ 10789768 (-) False tssc4
XM_039795128.1 mRNA upstream 13146 11476506 ~ 11510300 (-) False mtfmt
XM_039795126.1 mRNA upstream 13146 11476506 ~ 11510299 (-) False mtfmt
XM_039795127.1 mRNA upstream 13386 11476746 ~ 11510299 (-) False mtfmt
XM_039795833.1 mRNA upstream 110673 11574033 ~ 11599614 (-) True c3h16orf87
XM_039795832.1 mRNA upstream 115364 11578724 ~ 11599622 (-) False c3h16orf87
TU35186 other downstream 2094292 9295068 ~ 9296746 (-) True G26298
TU35108 other downstream 2411962 8852787 ~ 8979076 (-) False LOC120555589
TU34939 other downstream 3244137 8144207 ~ 8146901 (-) True G26071
XR_005638761.1 other downstream 4046282 7332784 ~ 7344756 (-) False lmnl3
TU34701 other downstream 4746432 6642446 ~ 6644606 (-) False dok4
XR_005638773.1 other upstream 13404 11476764 ~ 11510299 (-) True mtfmt
XR_005638741.1 other upstream 179871 11643231 ~ 11669155 (-) True LOC120555651
TU35842 other upstream 180211 11643571 ~ 11669269 (-) False LOC120555651
TU35894 other upstream 497341 11960701 ~ 11961772 (-) True G26891
TU35932 other upstream 841179 12304539 ~ 12304824 (-) True G26924

Expression Profile