Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073522 |
| length | 2295 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 20 |
| gene id | XLOC_037365 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 41156287 ~ 41208343 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019221 | cytokine-mediated signaling pathway | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0042127 | regulation of cell population proliferation | biological_process |
| GO:0006952 | defense response | biological_process |
| GO:0007259 | receptor signaling pathway via JAK-STAT | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0043434 | response to peptide hormone | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ko04630 | JAK-STAT signaling pathway |
| ko04217 | Necroptosis |
| ko04658 | Th1 and Th2 cell differentiation |
| ko05200 | Pathways in cancer |
| ko05161 | Hepatitis B |
| ko05321 | Inflammatory bowel disease |
| ko03000 | Transcription factors |
| id | description |
|---|---|
| ZDB-GENE-030616-264 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within vasculogenesis. Predicted to be located in cytoplasm and nucleus. Is expressed in anterior lateral plate mesoderm and pharyngeal arch. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; autoimmune disease (multiple); dermatomyositis; genital herpes; and systemic scleroderma (multiple). Orthologous to human STAT4 (signal transducer and activator of transcription 4). |
| ensembl_id | ENSDART00000105764 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073518 | lncRNA | upstream | 73637 | 41080094 ~ 41083181 (+) | False | XLOC_037363 |
| TCONS_00073517 | lncRNA | upstream | 73637 | 41080094 ~ 41083181 (+) | True | XLOC_037363 |
| TCONS_00074931 | lncRNA | upstream | 1291146 | 39863253 ~ 39865672 (+) | True | XLOC_037353 |
| TCONS_00073476 | lncRNA | upstream | 2538487 | 38615603 ~ 38618331 (+) | True | XLOC_037344 |
| TCONS_00073469 | lncRNA | upstream | 2686011 | 38470041 ~ 38470807 (+) | False | XLOC_037341 |
| TCONS_00073527 | lncRNA | downstream | 34906 | 41238241 ~ 41240872 (+) | False | XLOC_037366 |
| TCONS_00075179 | lncRNA | downstream | 34906 | 41238241 ~ 41246508 (+) | False | XLOC_037366 |
| TCONS_00073528 | lncRNA | downstream | 37433 | 41240768 ~ 41246508 (+) | True | XLOC_037366 |
| TCONS_00073533 | lncRNA | downstream | 271607 | 41474942 ~ 41479386 (+) | True | XLOC_037368 |
| TCONS_00073534 | lncRNA | downstream | 306613 | 41509948 ~ 41579002 (+) | False | XLOC_037369 |
| TCONS_00073519 | mRNA | upstream | 42940 | 41103127 ~ 41113878 (+) | True | XLOC_037364 |
| TCONS_00073516 | mRNA | upstream | 73637 | 41080042 ~ 41083181 (+) | False | XLOC_037363 |
| TCONS_00073515 | mRNA | upstream | 74237 | 41080029 ~ 41082581 (+) | False | XLOC_037363 |
| TCONS_00073514 | mRNA | upstream | 110945 | 41040294 ~ 41045873 (+) | True | XLOC_037362 |
| TCONS_00073513 | mRNA | upstream | 126218 | 41025025 ~ 41030600 (+) | True | XLOC_037361 |
| TCONS_00073524 | mRNA | downstream | 15632 | 41218967 ~ 41247197 (+) | False | XLOC_037366 |
| TCONS_00073525 | mRNA | downstream | 15639 | 41218974 ~ 41247189 (+) | False | XLOC_037366 |
| TCONS_00073526 | mRNA | downstream | 20765 | 41224100 ~ 41227570 (+) | False | XLOC_037366 |
| TCONS_00073530 | mRNA | downstream | 256424 | 41459759 ~ 41470408 (+) | False | XLOC_037368 |
| TCONS_00073531 | mRNA | downstream | 256437 | 41459772 ~ 41479522 (+) | False | XLOC_037368 |
| TCONS_00073510 | other | upstream | 259635 | 40895771 ~ 40897183 (+) | True | XLOC_037359 |
| TCONS_00073509 | other | upstream | 260006 | 40895649 ~ 40896812 (+) | False | XLOC_037359 |
| TCONS_00073505 | other | upstream | 878555 | 40278147 ~ 40278263 (+) | True | XLOC_037355 |
| TCONS_00073504 | other | upstream | 1019206 | 40137497 ~ 40137612 (+) | True | XLOC_037354 |
| TCONS_00073499 | other | upstream | 2143383 | 39011226 ~ 39013435 (+) | True | XLOC_037351 |
| TCONS_00073529 | other | downstream | 46122 | 41249457 ~ 41266843 (+) | True | XLOC_037367 |
| TCONS_00073536 | other | downstream | 390161 | 41593496 ~ 41593610 (+) | True | XLOC_037370 |
| TCONS_00073538 | other | downstream | 479591 | 41682926 ~ 41683010 (+) | True | XLOC_037372 |
| TCONS_00073540 | other | downstream | 530198 | 41733533 ~ 41733610 (+) | True | XLOC_037374 |
| TCONS_00073545 | other | downstream | 786751 | 41990086 ~ 42038319 (+) | True | XLOC_037377 |
