RNA id: XM_039794637.1


Basic Information

Item Value
RNA id XM_039794637.1
length 3469
RNA type mRNA
GC content 0.42
exon number 11
gene id tmod2
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18335550 ~ 18360210 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTGAGTGAGAAATCAAGCACTGAAGACATCGCATTCAGTGGGAAGACGGGCGTTATTTGGAGATTCCTTAGTTAGGTCCCATTAGCCTCAGATCTTGGCCAGAAATGTCGTCTCATCATTGAATTCATATGATGCAAGAgtaGCCTCTCCCTGTTCTGGAGCAGTTAGCCTGAGAGGGAACATTGTGGCTGTGGTCTGCTGTTCAGTGTTGCTTAGCAAGCTATAGCCGGCACCATGGCGCTGTCATTCAAGAAGGACCTGGAAAAGTACAAGGATCTCGACGAAGATGAAATCCTCAACAAACTGACGGCGGAGGAGCTCAAACAGCTGGAGACGGCCCTCGAGGAGATAGACCCTGAGAATGCTCTTCTCCCAGCGGGCTTACGTCAGAAGGACCATACAACTAAGACAGCAACAGGATCATTCAACAGGGAAGGCCTTCTCAAGTACCTGGAGAAGGAAGCCATGGAGTACAAGGACAGAGAGGATGTAGTGCCCTTCACTGGGGAAAGAaaagGTAAAGCATTTGTTCCTAAGCAGAAACCAATGGAAACCCGCCAGGAGGAAGTCACAACCCTTGATCCAGAATTAGAGGAAGCCCTGTCAAGCGCCACAGATACAGAACTGTGTGATCTAGCAGCGATCCTGGGTGTTCACACGCTGGTCACCAGTAGTCAGACATATGATGGGACTACATCTAAAGAGGGTTACAACAATGTGATCAAAGGGGAGAAGATGAACCCAGTGTTTGATGAGCCTCCCAATCCCACTAATGTAGAAGAAACTCTGCAGAGGATAAAAAGCAATGACAGCTCCTTAACGGAGGTCAACCTTAACAACATTAAGAACATTCCAATTCCCACACTGAAGGACTTCGCCAAAGCCATGGAGAAGAACACGACCGTCAAGAAGTTCAGCCTGGCAGCAACGCGGAGTAACGACCCCATTGCTGTGgcGTTCAGTGACATGCTGCGAGAGAACAAGACGTTGCGAGCGTTGAACTTGGAGTCCAACTTCATCACCGGGGCAGGGGTGCAGGCTTTGGTTGATGCGTTGCGAGACAACGACACACTCACAGAAATCAAGATAGACAACCAGaggcAGCAGCTGGGTACTACTGTAGAGATGGAGATAGCTAAGATGTTGGAAGAGAACAACAACATAGTGAAGTTTGGCTACCACTTCACCCAGCAAGGACCTCGCTccagagctgctgcagctatcACCAAGAACAATGATCTGGTCCGCAAGAAGCGAGTGGAAGGGGACCAGTAGGGACGAAGCCCAACCTGTCTCCCAGCCAATCCTGTTGTTTCATCTCACCATGTGGAATAATTTCAGCCAATGCCCTGGTCTCATCTCACTGTGTGGAAActttagtcttgtgccaaactGCGGGGCAAGGCGCGCTCAACCAGAACATACATCTGAGAAGAAGGGAAATAACTGGAATTGCCCTCTCCCATTTACATGTTCATActtatgtttattattatgtcGTTATTGAAGGTGTAAATCTGATTTGTTTTTAGTCATTTCATTTcagctgctctttttttttttttttttttagcctttatGTGATCTGTCCAGACTTTTTACttgctttttcccctttttatACTATGCTATAATCATGTGGGATAAACATGAACATTACCAAGTAACAATAACCTCTTTTGAAAAACAATAACTAACATTGAAAGAGCCTTGTATCCAACCATGATAGTTTGAGGCCTAAGCTCCCAGTGGAATACCTGTATTGAATCAGCAGAATGTGTCATTAGAACGATAGGTATATAGCTCTAAAGGTGATCTTAGGCTTAAGCATCAGAATGTGACGTGAAGCAAAGTCGAACCAGTCTGTTAGAGCCACAGCTTACTGGCAGAATAGTTATAATCTAGCGTAGCCATGACTACTGCAAACCTTGTCTGATTTTACAGCTGTAGATACCACAAGTTATCCTAAGGTAACATTAGTCACCATGTGGTTAGATCACTGTTGTACATTCCATCTGCATGGTGGTTTGCAGGTGTTTATTGGAGTTGCCTTGTAAAGCCAGCTTGACTGTCTGGCTGGTTATGTAACGGTTAAGTTTGTGCTGGCCTCAGAACAGATGCTGGCTCGCCCCCTTATATGAATTAAATTCTGTACGTATCAATGCATAATGTTTTTACATTGCTTTACTGTTTTATTCGAACTCAAgagcttgtttttttatatacgGTTCAATTCTGATGTTGGTTATTGTGATCATTCGTATCCCTTAACAATCAGATATAACTAGCTTTGGATATTTTGGATCAAGTAAAAGggggattgtactgtaaaaggAATAGGATATTAACTCAAACAGGCTTTGACCTGCTCTTACAAATGATGCCGTAAAATGTCTGCTCAACACACTGATGCTTAACCATGCCAAAGACTAACACATGCAGTGCTTCAAGTTTCAATATGTAACGTGAGGGTTACTGGTTCAGGTTTTGGCTTTGTCAGCTACAGTCACTTCATTGCAGTACACATCCGGGAAAGGAGTCTGTGGGTTAACAAAAATGATCTATACATTTCTTTAGATCTCATCATGCCATTACGTTTTCTATTTTTGTGGGCCCTTTGTAGCTTAAATGTTTAGCAAGTAGTTCACTAAGATGCGAGGAGAGTTGGCAAACACTTTATGTTTTACTTCTCAGGTTGGGACTATGACGGTTGCGAGATGTTTTCTGTGAACTTTATCTCCCAGATAGAAAGTTTTGTACAGATCTTGAATTAGAATGTTCTACTCCCTCTTTCACACTTTGACTTGGCTCTCAGCACTAACatgtcattcattcattatgtAACTGAAAACAACATGCTACGTGTGCCTCAAACTGAACTTCCTGAGGTACACTAACCTGCTTGAGATGGGTATAACGGGACTAATTCAGGATTACTTGAAACATTGTATATACTGTTTATGTGTAATAGGAACAGTATGCTGGCATGAACATCACTCATGTACGTTACGTTTCTATCGACCAAAAATGTTCTTTCATCCTCACAGCCTCACGTTCCCTGGACAAGAGTTGTATGGCTGAATTCAGTACTTTGGGTCTAATATCTGTGTGCTTCTTCCGTGGTCATATCTGCTActgctatttttcttttttcttggatcttttgtttttacattactgTGCTTTGCTGGTGGACAGTCAGCTTAAGTGGAAAACTGATTTTTGGCCTGGGCTTGTTAAGAATATTCTGTGATTCATAATATACATTCATTGTAAAATGCCATCTCAAATtcaaagtgcacacacacacttttgtatGTGTATACCACCTaaatctttagttttttttgtaccttATAACCCAGGTTTAGACTCAATATAAGGAATATGTACTATTATAAAACCACAAGACTGGTAAAACGCACTGCTGAATATAAGACATCCTcaacaataaatgtttttacatA

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG:

id description
K10370 TMOD; tropomodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37575 lncRNA downstream 14945 18310343 ~ 18320605 (-) False LOC120555717
TU37573 lncRNA downstream 25007 18305376 ~ 18310543 (-) True LOC120555717
TU37574 lncRNA downstream 25007 18305376 ~ 18310543 (-) False LOC120555717
XR_005638746.1 lncRNA downstream 29921 18298911 ~ 18305629 (-) False LOC120555717
TU37380 lncRNA downstream 378082 17957015 ~ 17957468 (-) True G28094
TU37597 lncRNA upstream 20982 18381179 ~ 18381522 (-) True G28263
TU37598 lncRNA upstream 21781 18381978 ~ 18382379 (-) True G28264
TU37601 lncRNA upstream 25334 18385531 ~ 18386608 (-) True G28267
TU37604 lncRNA upstream 55872 18416069 ~ 18420499 (-) False G28269
TU37621 lncRNA upstream 109616 18469813 ~ 18471450 (-) True G28284
XM_039794705.1 mRNA downstream 7762 18321428 ~ 18327788 (-) True lysmd2
XM_039795264.1 mRNA downstream 92540 18237855 ~ 18243010 (-) True gldn
XM_039795254.1 mRNA downstream 394079 17920329 ~ 17941471 (-) False sema6dl
XM_039794653.1 mRNA upstream 79385 18439582 ~ 18451019 (-) True usp8
XM_039794654.1 mRNA upstream 80788 18440985 ~ 18451019 (-) False usp8
XM_039794656.1 mRNA upstream 96353 18456550 ~ 18466081 (-) True LOC120555694
XM_039795684.1 mRNA upstream 111517 18471714 ~ 18482023 (-) True LOC120556233
XM_039794523.1 mRNA upstream 214863 18575060 ~ 18584594 (-) True LOC120555642
TU37410 other downstream 115000 18218122 ~ 18220550 (-) True G28121
TU37150 other downstream 822382 17508123 ~ 17513168 (-) False G27925
TU37147 other downstream 822382 17509950 ~ 17513168 (-) False G27925
TU37149 other downstream 822382 17510128 ~ 17513168 (-) True G27925
XR_005638870.1 other downstream 2695590 15639769 ~ 15639960 (-) True LOC120556584
TU37599 other upstream 22508 18382705 ~ 18383642 (-) True G28265
TU37603 other upstream 57781 18417978 ~ 18420499 (-) True G28269
TU37697 other upstream 359175 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 699558 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 763369 19123566 ~ 19126376 (-) True LOC120555836

Expression Profile