RNA id: XM_039794654.1


Basic Information

Item Value
RNA id XM_039794654.1
length 3446
RNA type mRNA
GC content 0.52
exon number 19
gene id usp8
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18439582 ~ 18451019 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGCAAAACGTcagagaagatgaagaagagaaTGCGGAACAAGGAGCGAGGATTTTTTTCTATGCCAGGAAACAGCTGTCAAAAGAGTAGCTAAAGTGTAAGCAACGGATCAGAAAGAGATATGTTCAGAGCTTGTGTACAGCACTGAAACTGTGAGCTCTGACTGAACACACCCGCGAAGATGCCTGCAGTTTCCACCGGGGCCAAAGAGCTATATCTGTCCACATCTCTGGCTGAACTCAATAAAAAGGCTGACATCAAGCCGGACAAGACAAGTACCAGAAGCTATGTTCAGAGTGCCTGCAAAATCTTCAAGGCGGCAGAGGAGTGTCGTCTGGACAGAGATGAGGAGAAAGCTTATGTGCTGTACATGAAGTATTTAACAGTATATGACATCATCAAGAAAAGACTAGACTTCAAGCAGCAACCGGAGTACTACATGACCATGCTTGGGCAAAACAGCTTTAAGAAAGCCATTGAAGAAGCCGAGAAGCTCTCTGAAAGCCTTAAACTCAGgtaTGAGGAAGTTGAGGTTCGAAAAAAACTtgaggagatggagagacaagaggagaagaaaaggaaggaggaaataacagaaaaagatgGTCATCCAAAAGTTTCATCGGCAAACAAGAAGGACAGCAAAAAGGTAAAAGGAGAACAGAATGAACTGAAGAATGAATTGAAGAAAGTAACCTCAAAAGCTGCGGTGTCAGCTGGTGGGATCTCAGCTGAGAAGCTTTTCCACATGATGAAGGACCAGACGATTACAATGATTGTCATGGATGCCCGCAGCCACAGGGACTTTGAGGAGTCTCGCATTCAGGTCTCAGGCCAGACCTGCGTCAGCGTGCCTGAGGAGGCCATTAGCCCGGGAATCACTGTGAATCAGATTGAGGCGAAGCTGCCCGAGGTGTCGAAAGAGCATTGGAAGCGGCGGGGGTTTGTGGATTATATAGTCCTGCTGGACTGGTTTAGTTCTGTCACTGACCTTACGCTGGGCACCACCTTGCGGAGCCTCAAAGATGCCCTCTATAAGTGGGATAGCATCACCATCCTGCGTAGTGAGCCACTGGTGCTGGAGGGAGGCTACGAGAACTGGCTGTTGTTTTACCCCATGTACACAACCAACGCTAAAGTCCGCCCCCCTAGACAGAATATCATCAGCTCCCTCCCTCAGTTGAACTTTAGCTACCCATCCCTGGAGGAACCAAAGCCTCCGACCCCACCTCTACCAGAGCCCGAGGCTACACCCGAGCCCCACGAAGCCTCCGCTCCTGTGCTGGTGAACGGGGTTGCACCAGCAGAACCCCCCGCATCTATAACTTCCATGGTGATTGACAGGCTGCCAGACGCTGTCAATTCCACCGTCACAGGCTCTACAAATTCTGAGCAAGATCTTAGTAAGAAGGGCCCTGTGGCAGGCACATCCAGCCAGTCACCTGCAACAGCCAAAGCCTTCCCGCAGTTTGACCGTACCAAGAAACCCTCAGTCCGGGTGTCGGACGAGCCTAAGCCCAGCCACAACGGGTCAGCGAAGGACCCCACGCAGAACGGCCCATTTGTCCCTGACCGCTCAGTCAAACCGCCCCTCGTCTCCAACACTTCTCTGTCTAAAGAAGAACAAAGCCAGATACACTCCGAGGTGGTGGCAGGGATGGAGAAGGCGAGGCAAGAGCAGGAGAAACGCATCCAGGAGCGTCGCGTAGAGGAGGAGAGACGGGAGAAGGAACAGAAGGAAAGGCTAGAAAGGGAACAAAgtgagaagaggaagaaggaagaggaggagaatggacttcaggagaaaaagaaactGGAAAGACAGAAGGCGGAAGAAGAGGGAGATAAAAAGAACAAGCTGTGGGacgagaaagagaggaggggaaaggagcagagctctgacactCCTTCGAAGAGTATGTCTCTGGACTCGCCTGCTCCCAATCATCTTGTTAGTGAAATTAAGAGGGAGCCCCTGACCAGAGCAAGGAGTGAGGAGATGGGTAGAAGTGTACCTGGCCTTCCAGTCGGTTGGATGAAGTTCCTTGACACGGTGACGGGGACCTACCGGTACTACCATTCCCCAACCAACCGTGTCCACCTGTACCCTCCTGAGGTCACTGTTCCCCAGACTCCACCCTCCACGCCACCAACAGTTAAACAGAAAACCCCACGACCAGCTGAGCCAGACACCAACTGTGAACAAGAGCGGGAACAGTCTAAACTGAAACGCTCCTACTCCTCTCCTGATATCAGCCAGGACCTGAGGGAGGAGGCCCAGAAGAAGGCCAGCGCTCCGACCACTGCTGCTGTTATACCCACCATCAACAGAGAGACCAAACCTCCCAGTGCTAAAGTCTATTCCAAAGTCGAGATCGCACGGCCGTCAGCTGCCAAAATTCGCAACCTGAATCCTACATTTGGAGGCAATGGTCCATCCCTGACTGGCCTTCGTAACATGGGCAACACATGCTACATGAACTCCATCTTGCAGTGTCTGTGTAACACTCCTGGCATGGCTGAGTACTTCAACAACAATTTCTACCTGGAGGACATCAACAGGCAAAACATCCTTGGTCATAAAGGGGAGGTGGCGGAGGAGTTTGGTGTGATCATGAAGGCCCTGTGGGCCGGTCTGTACAAGTTCATCAGCCCGCGGGACTTCAAGATCACCATAGGCAAGATCAATGACCAGTTTGCTGGCTATGACCAGCAAGACTCCCAGGAGCTGCTGCTGTTCCTCATGGATGGGCTCCACGAGGACCTCAACAAGGCGGACAACAGGAAGCGGTACAAGGAGGAGGAAAACGACCATCTGGATGATCAGACGGCAGCCGACTTGGCCTGGAGCAAACACAAGCTGCTGAACGAGTCCATCATCGTAGCGCTGTTCCAGGGCCAGTTCAAGTCCACTGTGCAGTGCCTGACCTGCCATCGCAAGTCCCGGACATTTGAGACCTTTATGTACCTGTCGCTGCCTCTGGCCTCCACCAGCAAGTGCTCCCTGCAGGATTGTCTGAGGCTGTTCTCCAAGGAAGAGAAGCTGACGGACAACAACAAGGTGTTCTGCAGACACTGCAAAGCCCACCGAGATTCCACCAAGAAACTGGAGATCTGGAAGGTCCCACCCATTCTCCTGGTGCACCTAAAACGATTCTCCTATGAGGGTAGATGGAAGCAGAAGCTGCAGACGTCTGTAGACTTCTCTCTAGACACTCTGGACCTGGCCCAGTACGTCATCGGACCAAAACAGAGCCTGAAGAGATACAGCCTGTTTGGAGTGTCTAACCACTACGGGGGTTTAGACGGCGGCCATTACACAGCCTACTGTAAGAACGCCCCCAAACAGCGCTGGTACAAGTTTGATGACCACGAGGTGACGgaaatctccacctcctccgtCAAGTCCTCAGCAGCCTACATCCTGTTTTACTCCAACCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37604 lncRNA downstream 20486 18416069 ~ 18420499 (-) False G28269
TU37601 lncRNA downstream 54377 18385531 ~ 18386608 (-) True G28267
TU37598 lncRNA downstream 58606 18381978 ~ 18382379 (-) True G28264
TU37597 lncRNA downstream 59463 18381179 ~ 18381522 (-) True G28263
TU37575 lncRNA downstream 120380 18310343 ~ 18320605 (-) False LOC120555717
TU37621 lncRNA upstream 18794 18469813 ~ 18471450 (-) True G28284
TU37628 lncRNA upstream 46830 18497849 ~ 18498089 (-) True G28291
TU37640 lncRNA upstream 91439 18542458 ~ 18558219 (-) False G28302
TU37639 lncRNA upstream 104946 18555965 ~ 18558219 (-) True G28302
TU37650 lncRNA upstream 117082 18568101 ~ 18569077 (-) True G28309
XM_039794635.1 mRNA downstream 80775 18335550 ~ 18360210 (-) False tmod2
XM_039794637.1 mRNA downstream 80788 18335550 ~ 18360197 (-) True tmod2
XM_039794705.1 mRNA downstream 113197 18321428 ~ 18327788 (-) True lysmd2
XM_039795264.1 mRNA downstream 197975 18237855 ~ 18243010 (-) True gldn
XM_039795253.1 mRNA downstream 499514 17920329 ~ 17941471 (-) False sema6dl
XM_039794656.1 mRNA upstream 5531 18456550 ~ 18466081 (-) True LOC120555694
XM_039795684.1 mRNA upstream 20695 18471714 ~ 18482023 (-) True LOC120556233
XM_039794523.1 mRNA upstream 124041 18575060 ~ 18584594 (-) True LOC120555642
XM_039795133.1 mRNA upstream 156450 18607469 ~ 18639221 (-) False homer2
XM_039795132.1 mRNA upstream 156450 18607469 ~ 18638819 (-) True homer2
TU37603 other downstream 20486 18417978 ~ 18420499 (-) True G28269
TU37599 other downstream 57343 18382705 ~ 18383642 (-) True G28265
TU37410 other downstream 220435 18218122 ~ 18220550 (-) True G28121
TU37147 other downstream 927817 17509950 ~ 17513168 (-) False G27925
TU37697 other upstream 268353 18719372 ~ 18720019 (-) True G28345
TU37831 other upstream 608736 19059755 ~ 19062150 (-) False LOC120555695
TU37839 other upstream 672547 19123566 ~ 19126376 (-) True LOC120555836
TU37840 other upstream 672547 19123566 ~ 19126376 (-) False LOC120555836
TU38446 other upstream 3130023 21581042 ~ 21583498 (-) True G28933

Expression Profile