RNA id: XM_039794655.1


Basic Information

Item Value
RNA id XM_039794655.1
length 2979
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC120555692
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 18433272 ~ 18439440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATGTCATGAGAGCTGCACTGTGGTTTAAGTGTATCAGTAGGTTGCCAAGATACAGTTGTCTGACAACAATGGATCCCTGGTGATTTACAGGTTCTCATGAGTGTCACAGAGTGCGTGCATCACCTGAGAGCAGaccaatatacacacacacacacacacacacacacaatttgtcAAACACCCATTAGGATAAGAGAAACTCTGCGCTCTGTGTCTTTGTTGTCTTACCCCTTTGTCATCGAACTAAACAGGCTACAGGGAGGAATTTCAGGCACACAGCAATTATGCTTTTGTGGCTTATCTCTTGATTTATCATAGTGGTTTTAGATCAGAGGTCTCTGTTGTGAGACAAGCCGTTGCTATTTTAAGATGGCTCTTTCTTAGCACAAGCAGAGAGGCTAAGATGAAGGCCAAGGCTTTGTCAGTGCGGGAGTGCACCTGGATGTCAGAGGAGTGCCACCTGGTGGATGAGCTGCATGGAGACTCCCAGAGGGACCGCCTGTGTTTACCAAACATCTTCAAGTCCAAAAAAGTGAAGCCGCTTACTAGGATTCAGACTGGACCTACTTACCAGGTCTACCATACAGCCAGGGAGCTCTTGCTGGAAGTGCTGGACAGAGGAGCCGTCCGGAAGTTGATCAGGAGAGCTGCCGGTGGGAAGGCAGGAGCTACCCGTCCGTCATACAGCCAGAGCAGAGAGCCCGGTGCAGATCTCTCTGAGGAGGAGTATGCCGAGGCTTTAACATTGTTCTCTATAGTCCTACAGAGCGGTCTGTCTGTAGGAGAGAACTGCAGATTTGGCTCTGAGCTGACCCTGAAACTGGATGGATGGCAGGGCATCCTGAAGAGAAACAGCTTCCAGACCAACCTGCTGTCTCTGACCAGACTGGAAGATGGAGACAAGTTGGAAGTCCTTTCTGCTTTCTGTAGCCACTTAACCAGGCGCTACCAGGCCTTATACACACCTGGTCACAACCTAAAAGTGAAGAAATACAGACTTTCCATCCAGCAGGGGCCTTGCTCTCTCCATCTAGCCCTCCTCTGTGACATGAGCTCCGGGTTCATTTGTAACATGTATCTGTACTGTCCCGAGCATCTCCAGAGGCAGAGTAGGAAACCTGTGGTTGAGCAGGTGGTCGGACACCTGCTGAGACCTTTTTGCAGCCACAGACACCTGGTTCAGCTGGACAGCTCTGCTTGGATGGAGGGCAGACTCGCAGACATCTTCTCTGGCTTGGGGGTCGATATTGATTTTGTTCCAACTGTTCAAAGATCATCTTCATCTCCACCACTCGTTGAGGACTCACTGTCTCAACCTGTAGCCCACCTGCAGGGCTGGACCGGACCTGCTCTGTTTCCTCTGTCAGATCTGAAGGGAGCAGCGGAAGATGTGTTTCTCCCAGGCATCTGGGTGACACTACATATCATCTGCATCAACACATTTACGCTTCACACTCTGCAGAGACAGGACTCAGGCAGGCAGGTCCACCTGACGGAGTTCACCAGGACTCTGGCCGCAAAGCTGGCTGTGGACAGCAGCATCACTGTGCCTGTTCTGCAACAGCTAAACAGCAGCTCATACCAAGACACAAGTTTAACATATCATTCTAAGCTAAGGATGAATTCCATCAGTGTGGAAAATGAGAAACAAGGCTGCAGCTCGGCAGTGAAGCTGCAGTCGGGCTGGAACAGACCAGGAGTGTGCGGTTTGGATAACTCCGGAAACTCCTGCTACTTAAATGCTGTGTTACAGTGTCTGTGTTCCACTGTGCCCCTCGTGGAGCACCTCCTTCATCAGGACACTCGCAATGAGCTGGGAAGGTCTAAGTGCTGGGTGGCTGGGATGTTTGTCCGCCTGCTGGAGGAGATGTGGCTGGGAAGGAGCTCCAGCTGTGCCCCTGTGGAGGTCAGGTCTGTGCTGTGCTCCATCCTCCCCCAGTTCAACAACCACTCCCAGCAAGACGCCCAGGAACTGCTGCTCTTTCTCCTCAATGCACTACACGACGACCTCAAAAAGGTGGCAAAGCGCCTGATGCACTCCTCAAGACGACAACCGAGACAAGACCAGAATAGAAACTGTGCCAGCGCAGCGGGGGAGTCCAGCACCATTGTCTCACATCTGTTTGAGGGCCAGCTGGGCTACATGACCCTCTGCATGCACTGCAGCcaccagacacacagcacacagacctTCACTGTACTGTCACTGCCAATTCCAACAGACATCATTAAGTGCTCCATTCAGGATTGCCTGTCACTCTTCTTCGAGCAGACTATCCTGACCAGAGGAGAGCAGATGTTGTGTTCGGGGTGTGGGATGAGGAGAGAAACGGCAGTCCTCACTTGTTTGGACAAACCTCCCGAAATCCTAATGTTGCACCTGAAACGGTTTGGTTGTAAGGGGAAGAACCAGGTGAAACTGAGGACGAATGTCGTGTTCTCCATGAGGCTCAATCTCTCCCCGTTTCTATCCAGCTCAGTACAGACCACCTCATATTCTTCATACCGCCTATATGCTGTTGTGaACCACACAGGTCATCTTCACACGGGTCACTACACAGCTCTGTGCCACAACGCCCTGACTCGGACCTGGCACTGTTTTGACGACTTGGCGATCCGAGAGGTACCGGACAGCCTCGTGCAATCTCCAAATGCCTACGTGCTGCTCTACAGCCGTAAGCGCTTCCAAAAACCAAAGATCCACGGACTCTGAGCTCTCCAACCAGCCCGCCAGGGGGCTGAGTCTCAACGTCCTTTTTGTTGGTTTATCGATACTTAAAAGAAATAGTTGTCAATCATGAGTCAACAATGTTTTAGAAGTCCAATGTTATCGGTGAAGTactattttaaaatgcatttaaatctgtcccccccccccccatcagtGGCCTTGCATCAGTCAGACATCACTGATGCTTGTTTTTGTGCTGACTTCACCATAACTGCTCTCCAAATAAATGTAAAGCTGCAGCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638782.1 lncRNA upstream 252071 18004828 ~ 18181201 (+) True LOC120555993
TU37361 lncRNA upstream 514076 17918900 ~ 17919196 (+) True G28083
TU37335 lncRNA upstream 544055 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA upstream 544055 17888850 ~ 17889217 (+) False G28065
TU37336 lncRNA upstream 557099 17871746 ~ 17876173 (+) True G28066
TU37466 lncRNA downstream 5376 18444816 ~ 18445296 (+) True G28163
TU37504 lncRNA downstream 167865 18607305 ~ 18609878 (+) False G28195
TU37505 lncRNA downstream 167865 18607305 ~ 18615809 (+) True G28195
XR_005638784.1 lncRNA downstream 406829 18846269 ~ 18847406 (+) True LOC120556026
TU37774 lncRNA downstream 614684 19054124 ~ 19055004 (+) True G28393
XM_039794797.1 mRNA upstream 13722 18403621 ~ 18419550 (+) False mapk6
XM_039794799.1 mRNA upstream 13722 18405351 ~ 18419550 (+) True mapk6
XM_039794798.1 mRNA upstream 13722 18407394 ~ 18419550 (+) False mapk6
XM_039794638.1 mRNA upstream 52926 18362149 ~ 18380346 (+) True leo1
XM_039794703.1 mRNA upstream 111968 18306445 ~ 18321304 (+) True scg3
XM_039796122.1 mRNA downstream 15216 18454656 ~ 18458552 (+) True hdc
XM_039794034.1 mRNA downstream 46622 18486062 ~ 18491068 (+) True gatm
XM_039794633.1 mRNA downstream 66088 18505528 ~ 18557335 (+) True pde8a
XM_039794634.1 mRNA downstream 76410 18515850 ~ 18557335 (+) False pde8a
XM_039796123.1 mRNA downstream 122433 18561873 ~ 18575942 (+) True LOC120556478
XR_005638756.1 other upstream 690538 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 2946851 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2986880 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5195453 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 5322933 13109757 ~ 13110339 (+) True G27086
TU37478 other downstream 122455 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1047806 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1058298 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1058653 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 1072916 19512356 ~ 19520218 (+) False ercc3

Expression Profile