RNA id: XM_039794677.1


Basic Information

Item Value
RNA id XM_039794677.1
length 1255
RNA type mRNA
GC content 0.54
exon number 4
gene id mrpl46
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 1021963 ~ 1030055 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACCATGGTGAAAACTCGCTTGAAGCCCTTAAGCAAAGATCCTCTATACTAAACCGACTCTGCCTCAAGTAACACTCAATCTGCCCCATGCTTAGATAAAGGACAACACTTTATATCGGAAACTggggttcatgtttttgtcttcTGGTATCACCGAGGGAATAACGTGGTTGAAAATCCCTCCTCCAGCCTGTTTTGCCGCCGTCGGGACTTTTTTGCATATACATTGAATGTAGCAGAAAAAGATGTCTGCTCCCTGTAGAAGGATGGCTCCTCGGTCTCTCTTCCAGTTGCTGTCTTTCAGTCGGACAGCGGGCGGGAGCTCGGCCTTTCGTCCGTTTTCCCGCAGCGCGTGTGTTCGTCGGGCGACTATGCAGGCCAAAAGTGTGACGGAAAAGGCGAGTTCTCCGTGGACTTTGATGGCAGCCGTGTGTCTGCAAAGACTCCCGGTCATCTCCGCGGACTGCGGCCCGCTAGAGCGCCGCTTCACCGACCTCATGCTCCAGCTTGAGTTGGAGAAAAGCTTGCTGTCGGACCACGAGCTGCGGCTGCTGGAGGACGCTGAGAGGATGAGTCGGAAGCAGGCAGACGACTATGATTCGGATGAAGAGGGCGAGCGTGGGGACCAGGAGATCGTGTTGGCTCAGGACCTGGAAGACTCCTGGGAGCAGAAGCTGAAGAGCTTCCAGCCAGCGCTGAGGGTCACGGCTGATGCAGATAAGGACTTGACCTCGTTGGAGCGCTGCCTGGCCAACTCGCTGCTTCTCTTGGCCGAGCAGAAGGTCGGGGGTGAGAAGCTGTGGCTGCTGCCTCAGACTCCGTGGCAGGAAGGAGAAACGCTGCGGCAGACAGCCGAGAGAGCCCTCACTTCCCTGCCAGCAGCTGGTTTCAAGGCGACTTTCCTCGGCAACGCCCCCTGTGGAGTGTACAAGTACAAACTGCCCAAAGCTGCTCGGACGGAGAGCTCGGTCGGAACAAAGGTGTTCTTCTTCAAAGCCATTCTGTCAGACAGCGGCCCCCCCGCAGCCCCAAACGCTCCTTTTCTGTGGGTGAAGAAGAATGAACTGCAGCGCTACCTGAAACCAGCATACATGATGAAGGTTGACCGCTTCATCCTCGACCTGTGACGCCGACGTACAGAACAATATTTATGAGGCCCAGAAAGTTACCGTTGTTGCTTATCCTGTCGTCTTGTATCCTAAAATGTTCTTTCATTCAATATGTGttgtataaataaatagttttttttccata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K17427 MRPL46; large subunit ribosomal protein L46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33497 lncRNA downstream 89170 932258 ~ 932793 (-) True G24895
TU33481 lncRNA downstream 247264 765212 ~ 774699 (-) True G24881
TU33479 lncRNA downstream 286686 730918 ~ 735277 (-) False G24880
TU33476 lncRNA downstream 290136 730918 ~ 731827 (-) False G24880
TU33518 lncRNA upstream 317 1030372 ~ 1032602 (-) True G24914
TU33536 lncRNA upstream 31104 1061159 ~ 1105167 (-) False pnoca
TU33542 lncRNA upstream 103464 1133519 ~ 1133789 (-) True G24931
TU33546 lncRNA upstream 120173 1150228 ~ 1150957 (-) True G24934
TU33547 lncRNA upstream 120967 1151022 ~ 1151337 (-) True G24935
XM_039795075.1 mRNA downstream 100414 706157 ~ 921549 (-) True ntrk3b
XM_039795074.1 mRNA downstream 695235 301918 ~ 326728 (-) True sv2ba
XM_039795073.1 mRNA downstream 725676 293684 ~ 296287 (-) True mespba
XM_039795072.1 mRNA downstream 731588 289261 ~ 290375 (-) True mespaa
XM_039794338.1 mRNA downstream 788370 173297 ~ 233593 (-) True igf1rb
XM_039794675.1 mRNA upstream 7700 1037755 ~ 1056294 (-) True pdpr
XM_039794676.1 mRNA upstream 7700 1037755 ~ 1056287 (-) False pdpr
XM_039794047.1 mRNA upstream 31049 1061104 ~ 1079488 (-) False pnoca
XM_039794049.1 mRNA upstream 31049 1061104 ~ 1079480 (-) False pnoca
XM_039794048.1 mRNA upstream 31049 1061104 ~ 1070692 (-) True pnoca
TU33668 other upstream 401913 1431968 ~ 1457091 (-) False LOC120555898
TU33669 other upstream 401913 1431968 ~ 1456472 (-) False LOC120555898
XR_005638786.1 other upstream 558831 1588886 ~ 1642348 (-) False LOC120556047
unassigned_transcript_137 other upstream 803266 1833321 ~ 1833394 (-) True trnat-agu_3
TU33895 other upstream 1245420 2275475 ~ 2277091 (-) True G25228

Expression Profile