RNA id: TCONS_00073527


Basic Information

Item Value
RNA id TCONS_00073527
length 363
lncRNA type retained_intron
GC content 0.40
exon number 2
gene id XLOC_037366
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41218967 ~ 41247197 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aataaatgaaaaaatattgtgatttaaaaaaaaaatgaagcataGGCACTCATTGCTTTGCACCACATAAACACAACTAAGCccttaaaatacactctggaccacccctttaggTTTAGCTAATTCAGTTTATTCAGATCAGTGTAACTCCACCGGTGCGCAGCTCCATATCTTCATGCATTGCAGCTTTTATCAGTTTTATCTGTTTTCAGGTCACAAAGCCCAAGGTGACCCTGAGGGACTCATCCAGTGGAGTGCATTTTGTAAGACGTCTCCTAATGAGAGAGGTATACCATTTTGGTTGTGGATAGATGGAATTCTGGACCTTATTAAAAGACACCTGCTCAACATCTGGAATGATGG

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0060337 type I interferon signaling pathway biological_process
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0006952 defense response biological_process
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0043434 response to peptide hormone biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-23 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasm and nucleus. Is expressed in cardiovascular system; intermediate cell mass of mesoderm; kidney; and lateral plate mesoderm. Human ortholog(s) of this gene implicated in breast cancer (multiple); immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Orthologous to human STAT1 (signal transducer and activator of transcription 1).

Ensembl:

ensembl_id ENSDART00000148337

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073518 lncRNA upstream 155060 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA upstream 155060 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00074931 lncRNA upstream 1372569 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073476 lncRNA upstream 2619910 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 2767434 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073533 lncRNA downstream 234070 41474942 ~ 41479386 (+) True XLOC_037368
TCONS_00073534 lncRNA downstream 269076 41509948 ~ 41579002 (+) False XLOC_037369
TCONS_00073535 lncRNA downstream 269076 41509948 ~ 41598827 (+) True XLOC_037369
TCONS_00073541 lncRNA downstream 547345 41788217 ~ 41806355 (+) True XLOC_037375
TCONS_00075180 lncRNA downstream 861329 42102201 ~ 42108086 (+) True XLOC_037379
TCONS_00073526 mRNA upstream 10671 41224100 ~ 41227570 (+) False XLOC_037366
TCONS_00073521 mRNA upstream 29898 41156287 ~ 41208343 (+) False XLOC_037365
TCONS_00073520 mRNA upstream 29898 41156287 ~ 41208343 (+) False XLOC_037365
TCONS_00073523 mRNA upstream 31206 41156818 ~ 41207035 (+) True XLOC_037365
TCONS_00073522 mRNA upstream 34906 41156818 ~ 41203335 (+) False XLOC_037365
TCONS_00073530 mRNA downstream 218887 41459759 ~ 41470408 (+) False XLOC_037368
TCONS_00073531 mRNA downstream 218900 41459772 ~ 41479522 (+) False XLOC_037368
TCONS_00073532 mRNA downstream 233751 41474623 ~ 41481650 (+) False XLOC_037368
TCONS_00073537 mRNA downstream 371770 41612642 ~ 41681053 (+) True XLOC_037371
TCONS_00073539 mRNA downstream 449281 41690153 ~ 41741420 (+) True XLOC_037373
TCONS_00073510 other upstream 341058 40895771 ~ 40897183 (+) True XLOC_037359
TCONS_00073509 other upstream 341429 40895649 ~ 40896812 (+) False XLOC_037359
TCONS_00073505 other upstream 959978 40278147 ~ 40278263 (+) True XLOC_037355
TCONS_00073504 other upstream 1100629 40137497 ~ 40137612 (+) True XLOC_037354
TCONS_00073499 other upstream 2224806 39011226 ~ 39013435 (+) True XLOC_037351
TCONS_00073529 other downstream 8585 41249457 ~ 41266843 (+) True XLOC_037367
TCONS_00073536 other downstream 352624 41593496 ~ 41593610 (+) True XLOC_037370
TCONS_00073538 other downstream 442054 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073540 other downstream 492661 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073545 other downstream 749214 41990086 ~ 42038319 (+) True XLOC_037377

Expression Profile

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