RNA id: XM_039794699.1


Basic Information

Item Value
RNA id XM_039794699.1
length 6824
RNA type mRNA
GC content 0.54
exon number 38
gene id lrrk1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 9861152 ~ 10096639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatgtcaatgcttgACACACACAGCGTGTAGTGTCCTGCTGTCGGAAAGTTTGCACGGTGGAATCAGGAAGTCCAGCATAACATTAATATCAAACGGTTACTGCTGAGGACTTCGAAGCGGTGAAACCCTCTCGTGATGCTGACTGGACTTCTCAGCCATGTGGGTGACCGCTAAGTCCAGGCCTCCTCTCTGTGGTGGAACTTTAAACGGGATCAACCAGTGACTCCAGTAGGAATGTCTTACTGGTCTGTTGGCCTTCCCCAGGACACTCCCAGCAAAATGGAGCAACAAAGCAGCCCTGGGGAGGAAATGGGAGCCAAGGTATCGTTGATTGAGGGTCCAGGTCCCGGCTCTGCACTGGTTCCTTCTCCCACTCTGGAGAACATCCGGGCAGCCTACGAAGATGGAGAGGGGGAGGCTGCCAGGGATTTGATCCAACAAGCCTGCTGTGTGGAGTGCAGTGCAAGGATGCCCCACATCGACGGGTTACGTCTCCTGTGTGTGGCCACTCAACATGGTGATCTGCAGAGTGTGTGTTACCTCCTGAAAGAAGCCCGTATCCCTGTGCCCCAGGAGCCATCCAAAAGCAACCCAGCCATCATGGCAGcatactatggccacgccagcTTGGTCAAAGAGCTGCTGGATTCCATACCTGGTCCATGTCTGAGGGGAGACTTGCTGAACTGGATGCTAGCCACATCTTGCCAGCAGGGTCACCTGGACGTAGTCCGGCTGCTCGTCCATGGCTATGATGTTGATGCCAAGGACTGTGCCATCCACAGCGATGAGTTTGCTGTAATTACCGGGCTGCCGCTGTACGCTGCTGCACGAGCAgGTAATGAAGAGATAGCTCGCTTCCTGCTGCAGAATGGAGCAGGATTCTCCTCATACACCCTGATGGACCATCCAGCCTTCAGCAAACACCTCCTTAGACTCAAACTACAGGAAACCTCCAACGCAGAGGGAGAGAAGgctGTCACTGTGTGCTGGAGTGGTCTGCAACTGCCATGGTTGGAGCTGGATTGGTTCATGGATGTCTCGTCACGTATCACCCACCTGGATCTGTCATCCAACAGCCTGGCTGCTCTGCCCTCCGTGGTGCCCTGGGGTCTGATCCACCTGCAGATTCTTGATCTTTCTAACAATCTGCTGAAAGAGCTGCCAGCTGCTCCCAGCTCCCACgaggtcatctgctccagTTTACAGCGCATAAATCTCTCTCAGAACCAGCTCACCAGTTTGCCACCCGGACTTCTGCATCTGACCCACGTCCAGCGACTTTCTGCTGCTAAGAACCAGCTCACAGTCCTATTTGACATCCCTACCACCACTAACTGGATCGGTCTTCGCAAGCTAGAGGAGCTGGATGTGTCTGACAACTGTCTGAGAAGTCTGCCCACAGCAGTCATGCACTGTTTGAAATCCCTGAGCTTCCTCAATGTGTGCAGGAACACACTGAGCACCTTCCCTGACCCCTGGGCTTGTCCTCTGAAGCAATGCAAAGCTTCCTCTAATGTGATCGAGAGTCTTCCAAACACTATCTCCATCTTTTGGAGGACTCATCTGCAGGAGGTGGACTTCTCCGACAACAGCCTGAAGGAGCTGCCCTCATATCTCTTTGAACTGGAGGCTCTTGTCTCGTTGAGATTGTGTGGTAATCACATTGCGACACTCCCAGCCCCCAGTAAGTGGAAGTGCTCTCAGCTCAGGACCCTCGATCTTTCCAGGAACCAGCTGGGCAAAACACAGGAGTTGCCCAAGTCCAGGAGGCTGGCCTTCCTGACTACATGGAACAGGAGGGACCCAGACCCAGTGTGTCCCATAGAGTTTCCCATGATTCTGCGGGATTCACTGGAAGTGCTTTTCTTGAATGACAACCAGCTGGAGTGTGTTCCCCAGTCAGTGTGTGGTCTGCACAGCCTCACTGAGCTCTACCTCTCCAATAATCTTGGAATCCGGGAGCTTCCAGCAGAGATCAGCCAACTCTCCAACCTGTGGCAGCTGGACACTGAAGACCTCAACATTAACAATGTCCCCCAGGAAGTAAGAAAAGAAGGACCTGCCTCTGTCCTGGCTTTCCTCCGGGCACACCTCCGAAAGGCAGAGCCTTTTAAACTGCTGAAGATGCTTGTGATTGGTCCACCGCGACAGGGGAAGACGGCCCTTCTAGAAGCTCTACAGACCGGCAGGGTGGCCCCCTTCACCCCAGCAGAATGCAGCATCTCCACCTCCACGTGGGAGCTGGACAAACCCACCGGAGGCAGAAACAGCAAGGACTCAGTGGCGTTCAACGTATGGGACATAGGTGGTCAAGCGAGCATGTCCACAGTGAACCAGTGTTTCTTCACTGATAAGGCCCTGTATGTGGTGATCTGGAACCTGGCTCTGGGAGAGGAGGCTGTAGCCAACCTGCAGACATGGCTGCTCAACATAGAGGCGAGAGCACCCAACTCTGCCGTGGTGGTCGTGGGAACACATTTGGATCTCATCGACACCAAGTTCCGCACTGAGAGACTGGCCACGCTGAGAGCATACATTCTGGCTCTGTGCAGATCCCCTTCAGGGGCTCGAGCCAGCGGCTTCCCTGACATCACCTGGAAACACCTGCATGAAGTGTCCTGTAAGACTCTGGAGGGCTTGGATGGGCTGAAGAAACTGATCTACCAGGTGGCTCTCTCCATGAAAGAAAGCAGCAGCTCAGCCTGTGGCGGTAAACTGCTGGGCAGACTGATCCCCAGGAGCTACCTGACACTTCAGGAAGCAGTGATAGCAGAGAAGCAGAGGCGAGATGCTGAGGGAGAGGTCCAATACCTAACTAATGATCAGCTGGAAGCCATCATCCAACAGAACCCAGAAAGTGACATCAGAGACTATGAGGACCTGCAGACTGCTATCAGTTTCTTGATAGAGACGGGGACCCTACTGCACTTCCCCGACACCAGCCACGGCCTGTGTACCCTCTACTTTCTGTGTCCTGTGTGGCTGTCAGAATGCCTGGAGAGGATCATGCACCTTAAGTCCTCTCACTCTGTAGCCAGGAATGGAGTGATCCGAGCTGAAGACCTAAGGATGCTGTTGGTAGGAACAGGGTTCACCGAGCAGACAGAGGAACAGTATTTCCAGTTTCTTACCAAGTTTGAGATTGCTCTGCCTGTGGCCAACAACAGCTATCTACTGCCCCACCTTCTTCCCCCCAAGCCAGCCATGGACATCCACGGCTTCCGTCAGCAGACCAACAACACCCTGCAGCGCCTTGTCCTGATGAGCTTTGTTCCTGCAGGATTTTGGGAGCGCTTCATTGCCAGGATGCTCATCAGCCTCAGAGAGATGGACCTGCAGTCATTTGAGCccaaaagaaacacaaggagcCAGCGCAGCAGGAACTCTGTGATCTACAGCTTTGCTGGAACCCAGCAGAGGAACCGTTGCAGCACCTTCAGAGTCCGACGCAGCCAGACCATATACTGGAAGGAGGGGCTGCTGGTCACTTTTGATGGTGGTTACCTCAGTGTGGAGTCATCAGATGTCAactggaagaggaagaagagtggAGGCATAAAGATCATCTGCCAGTCAGATGTGAGAGATTTCTCTGCCATGGCCTTCATCACAGACAACGTCAACTCTCTGATTGAGCAGTGGTTCCCTGCTTTGACAGCCAGTGAGAGTGATGGGAGTCTCCTCATAGAGCAGTACGCACCCTGTCCCCTCTGTGCCTCACTGGGCCAACAGAAGCCGTCCGAGCTCGTAGCCAGCCTGGCCGGCCAGGTTGGAGAGAAAGGAGCGCGTGGaggagctgacagaggaggagtACCAGCAGCAGGGGTTTGTTACTTTAACATGGAGGACTGTGTGCTGGCTGCAGTGGAGACGGAGCACATCATCTGTCCTCAGCACCCTGAGCAGCCAGTCCCCCTCCAGGAGCTTGTCCCAGAACTCTTCATGACGGACTTCCCTGCACGgctCTTTTTGGAGAGGGCCCAGCTGGAGTACTCTGAGGAGGAGAACAACATCCTTGGCCAGGGTGGCAGTGGGACCATCATCTACCGTGCCCGATATCGTGACCAGCCAGTGGCCATCAAACGCTTCCACTTGAAGAAGTGTCGACAGCAAACCATCAGCAGTGACACAGACACCATGGTGAAACATCTGCAGTCCGCAGATGCCTGTCGCAGCTTCTCTGAATTTCGCCAGGAGGCCAGTATGTTGCACTCTCTGCAGCATCCCTGCATCGTCTCTCTGGTGGGCATCAGCATCCATCCACTCTGCTTCGCCCTGCAGTTAGCCCCCCTGGGCAGCCTCAACTCCGTGCTGGAGGAGAAGCACAAAGGCACAGGCTCCAGGTACATGCCCCTTGGTCACATGCTTACTTTCAAAGTAGCCTATCAGATTGCTGCAGGACTGGCTTACCTTCACAGGAAGAGCATCATCTTCTGTGACCTCAAATCTGACAACATCCTGGTGTGGTCTCTGGAGGTGCAGGATCCAGTTAACATTAAACTGTCTGACTATGGCATTTCTCGACAAACTTTCCATGAGGGAGCGTTGGGGGTCGAGGGCACACCAGGTTACCAGGCTCCTGAGATCCGACCAGGCATCGTGTATGATGAGAAGGTGGACATGTTCTCCTATGGTATGGTGCTGTATGAGCTGCTGTCTGGGCGGAGGCCTGTGCTGGGACACCATCAGCTTCAGATAGCAAAGAAGCTCTCCAAAGGCATCCGTCCAGTGCTAGGCAGTCCACAGGAGGTTCAGTTCTGCTGCCTCCACAGCATGATGACTGAATGCTGGGACACCAAGCCTGAGAAGaggccGGTGGCCATGCGGTGTGTGAGGCAGATGCAGGAGCCCAGCTTCCCCTGCCTCAGGTACCTATTGCCCTGTGACAGCCACTCACAGCTCTTCCTGTCCCAGCTGCAGGGACACAGCGCTGTGTTCTGGAACGGAGACAAGGAAAACAGgAGCTACAGTGTGGTGAATGTGGAAAAGGGCCAGGTGGAGGTGAAGAGGATGTCCTGTGCAGGCAGCAGGATCAGCTGTCAGATGAAGATGGGTAACATTCTGTGGATGGCCACTGAGgAGCAGGAGGTTTTCATCTACAGTCTGAAGGACATGTGTCCACTAAGTCAACCCCAGAAACAGTTCTCCTGTCCAGGCGTCATCACCTGCCTTTTCCCTGTTCCAGCAAGAGAACAGAGCCTGGCCAGAGTGTTTGCGGGGATGTCTGACGGCCTGGTGGCAATGTACAGCTTGGTGGAGGACCTTCCTCTGGAGGGGGAGACCTACCTGTGTTTACACACCCTCAACAAGACGGTGTTTGCTCTGAAGGACTCCGATCCCAGGCAGAGACCCTACCCAGTCAGGAGCATGGCACTGGTCAGCAGTGGCTCCCAGTTATGGTTCTCCAATGGTCCGGGCGTGCTGGTCATTGACTGTCTGAGTCTTCGGGCAGTTCAAAGGTTGGAGCCCTACAACCCGCCGTCCTCCATCATATCCATGACAACCAGCTTCAGTTTATGGGGAGAGGAGGCAGTGTGGACCCTGGATGACCACACCAACACCCTGCTGCTCTACCATGCTGCCTCCTACCAGCTCTGTGCCAAGTACAGCTGTGGAGACAGCAATCCTCTTCGGGACGTTTTCGCTGTGCAGAGACCTGCAGGGGTTGCCATGGTGACAACCACTGAACTCAAGCCCACGGACCAAGAAGACAACCTGGAATGGACTGAGGGAGAAGTGACATTGATCTACAGTGAGGAGGCGGGCACTCAGATCATCCAGCATCAGGATTCACTGACAGAATACTGCTCCATATCATCCAACTGCTCCCTGGAGCCACTGGGGTCAGACTGTTCCAGCACTGCAGGCCTCGCCTCATTAGCCAGCCACAGCAGTGTGCCACTGCCAGCAGAGGACCAGGACCAGCAGGCATCCACTAACCCCACACCGCCGCACCTGCAAGCATTCACTGTGCTGCCAGTGAACGGAACTCTGTGGATCCCCAGGCGTGGAGGTGATATGATGGTCATTGAAATGCAGTCACATGGCAGTCAGCTGAGGGGGCGTGTCATTGCTGTCCTCAGTCCACCCGGATGTTCATCTTTGGGgaTCCTGGAGGAGGCAGTACTAGTGGCAAAGGATACAGTTGTATGTGGCTTTCATAAGGAAAACATGGAGTGGTGCCTGTGTGTCTGGAGGGGCTGGGGCTGCCGCGAGCTGGAAGTCTTCTACCAGTCTTATGAGGAGCTCAGCCGCTTGGAGACCAGTATGAGGAAAAGAAGGTAGCTGTTGTGCTGCGTCGACGAGGTGCAGAATCGCAGCTCTGTATGGAGTGCGAGCCGAGGGAAATACCCTCCGACAGACTGCCAGTGTTCAGAGCAGGGGGCCGCGGAACGCTGACATCAGGGCAACgtaggagggggaggggggtctGCTGTAAGGGCTGAGCCTCCAGTTGTGCACAGTGGTTATGTCCCCTCACTACATACTTCAGTACCAATAATAAATTAAGGCCTGAGAAATCTGTAATCCCACAGCAGACTTGGTAAGCCCTGAAGCTGAGTCACAGATTCAGGTTTACTTCTGCACAGGTTTTAATTTTGGTTGCATTTTGATATTTAGCCAGTTTGGTATGACTGGAATTCATTTGCAGATGTGGTGGACTGTTTGTGTCTGACTCCAGCTGCTGCAATCCATTGTTTATTCTGTCTGTCTATTTCAGTCTTCCTTCATTTAACTGTTCCAATCTGCAACTTTAATCAcattcttaaagtgatggttcggagtaatttcaccctagggtcctttgcaccatgatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35308 lncRNA upstream 66960 9793969 ~ 9794192 (+) True G26391
TU35303 lncRNA upstream 69399 9746137 ~ 9791753 (+) True G26386
TU35280 lncRNA upstream 133412 9727192 ~ 9727740 (+) True G26368
TU35279 lncRNA upstream 138469 9722223 ~ 9722683 (+) True G26367
TU35268 lncRNA upstream 205823 9653584 ~ 9655329 (+) False asb7
TU35377 lncRNA downstream 660 10097299 ~ 10099084 (+) True G26453
TU35375 lncRNA downstream 2744 10099383 ~ 10101304 (+) True G26452
TU35376 lncRNA downstream 3693 10100332 ~ 10101417 (+) False G26452
TU35380 lncRNA downstream 17274 10113913 ~ 10114187 (+) True G26456
TU35381 lncRNA downstream 21447 10118086 ~ 10118347 (+) True G26457
XM_039795993.1 mRNA upstream 2468 9814697 ~ 9858684 (+) False aldh1a3
XM_039794585.1 mRNA upstream 184125 9653578 ~ 9677027 (+) False asb7
XM_039794586.1 mRNA upstream 184125 9654613 ~ 9677027 (+) False asb7
XM_039794584.1 mRNA upstream 184125 9659399 ~ 9677027 (+) True asb7
XM_039794581.1 mRNA upstream 218194 9632007 ~ 9642958 (+) True lins1
XM_039795154.1 mRNA downstream 328524 10425163 ~ 10465554 (+) True LOC120555943
XM_039795167.1 mRNA downstream 387824 10484463 ~ 10485311 (+) True LOC120555947
XM_039795168.1 mRNA downstream 431199 10527838 ~ 10609081 (+) True LOC120555948
XM_039795169.1 mRNA downstream 645071 10741710 ~ 10745326 (+) True LOC120555949
XM_039795093.1 mRNA downstream 693206 10789845 ~ 10840149 (+) False shcbp1
TU35313 other upstream 1152 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 256716 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 705809 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 1100851 8753701 ~ 8760301 (+) True G26205
TU34538 other upstream 3571376 6288190 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1934982 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 3013118 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 3138596 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 5344838 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 5378525 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile