RNA id: TCONS_00075179


Basic Information

Item Value
RNA id TCONS_00075179
length 1070
lncRNA type sense_over
GC content 0.41
exon number 6
gene id XLOC_037366
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41218967 ~ 41247197 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aataaatgaaaaaatattgtgatttaaaaaaaaaatgaagcataGGCACTCATTGCTTTGCACCACATAAACACAACTAAGCccttaaaatacactctggaccacccctttaggTTTAGCTAATTCAGTTTATTCAGATCAGTGTAACTCCACCGGTGCGCAGCTCCATATCTTCATGCATTGCAGCTTTTATCAGTTTTATCTGTTTTCAGGTCACAAAGCCCAAGGTGACCCTGAGGGACTCATCCAGTGGAGTGCATTTTGTAAGACGTCTCCTAATGAGAGAGGTATACCATTTTGGTTGTGGATAGATGGAATTCTGGACCTTATTAAAAGACACCTGCTCAACATCTGGAATGATGGGTATATTGTAGGGTTTCTGAGTAGAAAGCAAGAGAAGGCTATGCTGAGAGACAAAGCTCCAGGCACTTTCCTTCTGCGCTTTAGTGAAAGCTGTCGAGACGGAGGAATCACCTTCACATGGGTGGAAGAATCACAAGATGGTGAACCCAAGATCCATTCGGTGAAGCCCTACACTAAAGCAGATCTGGCAACCATCTCCATGCCAAACATTATCCGTGACTACACACTTGCTGCTCCAATGAAGGTTCCAGTGTATCCCCTCATCTACCTTTACCCGAACATCCCAAAAGATGAAGCTTTTGGTCGCTACTATACCAGTGAATCTGAAGATTCAGAAGACATGGAGACAGACAAACCCATCAACTCAGATGCAAATCCATACTTAAGGAGACATCTGATGCATGTGTCTGATAAACCTGTTGCAAGACCCGTTGCAAGGTTTTAGGAGGATATCACTGTACCAAAGTCTACTCCACAGATGCATCTACAGAAGCCCACACTCATATTTTCTTTGGAAGAGGAAAATACAGTAATACCATTCATAGGAGTACAGAATTTACCAGAAAACTATAATGGACAACATAAATATCTTTGCACAGGTCTTCTCTGTACTAAATTAGTGATCtgctacatttatttaaaattgatctGAAACAAAGAGACATTTCCTTCCTTTCCTATTGTtgttgttacacacacacacacac

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0060337 type I interferon signaling pathway biological_process
GO:0019221 cytokine-mediated signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0006952 defense response biological_process
GO:0007259 receptor signaling pathway via JAK-STAT biological_process
GO:0043434 response to peptide hormone biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073518 lncRNA upstream 155060 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA upstream 155060 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00074931 lncRNA upstream 1372569 39863253 ~ 39865672 (+) True XLOC_037353
TCONS_00073476 lncRNA upstream 2619910 38615603 ~ 38618331 (+) True XLOC_037344
TCONS_00073469 lncRNA upstream 2767434 38470041 ~ 38470807 (+) False XLOC_037341
TCONS_00073533 lncRNA downstream 228434 41474942 ~ 41479386 (+) True XLOC_037368
TCONS_00073534 lncRNA downstream 263440 41509948 ~ 41579002 (+) False XLOC_037369
TCONS_00073535 lncRNA downstream 263440 41509948 ~ 41598827 (+) True XLOC_037369
TCONS_00073541 lncRNA downstream 541709 41788217 ~ 41806355 (+) True XLOC_037375
TCONS_00075180 lncRNA downstream 855693 42102201 ~ 42108086 (+) True XLOC_037379
TCONS_00073526 mRNA upstream 10671 41224100 ~ 41227570 (+) False XLOC_037366
TCONS_00073521 mRNA upstream 29898 41156287 ~ 41208343 (+) False XLOC_037365
TCONS_00073530 mRNA downstream 213251 41459759 ~ 41470408 (+) False XLOC_037368
TCONS_00073531 mRNA downstream 213264 41459772 ~ 41479522 (+) False XLOC_037368
TCONS_00073532 mRNA downstream 228115 41474623 ~ 41481650 (+) False XLOC_037368
TCONS_00073537 mRNA downstream 366134 41612642 ~ 41681053 (+) True XLOC_037371
TCONS_00073539 mRNA downstream 443645 41690153 ~ 41741420 (+) True XLOC_037373
TCONS_00073510 other upstream 341058 40895771 ~ 40897183 (+) True XLOC_037359
TCONS_00073509 other upstream 341429 40895649 ~ 40896812 (+) False XLOC_037359
TCONS_00073505 other upstream 959978 40278147 ~ 40278263 (+) True XLOC_037355
TCONS_00073504 other upstream 1100629 40137497 ~ 40137612 (+) True XLOC_037354
TCONS_00073499 other upstream 2224806 39011226 ~ 39013435 (+) True XLOC_037351
TCONS_00073529 other downstream 2949 41249457 ~ 41266843 (+) True XLOC_037367
TCONS_00073536 other downstream 346988 41593496 ~ 41593610 (+) True XLOC_037370
TCONS_00073538 other downstream 436418 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073540 other downstream 487025 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073545 other downstream 743578 41990086 ~ 42038319 (+) True XLOC_037377