RNA id: XM_039794709.1


Basic Information

Item Value
RNA id XM_039794709.1
length 3902
RNA type mRNA
GC content 0.46
exon number 11
gene id nr1h3
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14811445 ~ 14828395 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCAGCAGCCGAGCCGCTGAGGCTGAATCACATGATGATTATGCTAGCTAGTGAGCTAACGTGCTAAGTTCGGTTGTCAAAGCTGCTGTCAACAGCCACAAACGGACGGAGTGGCATACCCCAACTAACAAGTAGTTGAACACTCGTCAAGTAAACACATTTTGCCATGTGTGATGAAAAGGACATGTCTTCTTTCCTACTCGCTGTCTTCAAGATATCGAGTCATTAAACTTCCGCCCAATAACTCACTGGGATTTTGGCATCCTCAAGACTCATCACGCAAGCAAATACTCCATCAACTCAGGAATATTGACAGAATGAGGTTGTGGACTCACATGGCCAGGATGGGTAGACGATAAATAAGACATCAACTTCAGAGGTACAAGTGGATTTCGTAATGACAAGCTGCTGTGCAGAAGATGTCCACGTTGTCTGTGACTGATATCCCAGATGTTGGTCATGATGAGAGTAAGGTGTTTGACGGGGCCTCTGAGCTGCAGCTGGACTGCTTGGTTGAGGAGAGCAGTGGAAGCACCACAATGAAGCACGACGGCCTGCTGTCGCTGGCTGACCTCTCCCAGCCAGATGACTTCCCCGCCACCCCCCTTAATGGCCCTTTACTGACTGACATGAGTAGCCCTCTGCAGGTCGAGCCGGGGGACATTAAGCTGGACCCATCTGCAGGTGACACATCTGCTGCCAGCATAGATGGTCAGCCAGTGAAGAGAAAGAAGGGGCCTGCGCCAAAAATGCTGGGCAATGAGGTGTGCAGCGTATGTGGCGACAAGGCCTCTGGTTTCCATTACAACGTGTTGAGCTGCGAGGGCTGCAAGGGCTTCTTTCGACGCAGCGTCATTAAAAGTGCCCAGTACAACTGCAAGAACAACGGCCGCTGTGAAATGGACATGTACATGCGGCGCAAGTGCCAGCAGTGCCGCCTGCGCAAGTGTCGGGAGGCGGGCATGCTGGAGCAGTGTGTGCTTTCTGAGGAGCAAATCCGACTGAAGAAGATGAAAAAGCAGCACGAGGAGGAAACGGCCCGCACATCCACAGTGGTCACCCCCACTCCTCCACAGGAAACGGCCGCACTGGATCCACAGCAGCAGGACATGATTGAGAAGCTGGTGTCCATGCAGAAGCAATGCAACAAAAGGTCTTTCCTTGACCGACCGAAAGTGACGCCGTGGCCACAGAGTCAGGACATGCAGAACCGAGAAGTGCGTCAGCAGCGGTTCGCCCACTTCACTGAGCTTGCAATCATGTCAGTCCAGGAGATTGTGGATTTCGCTAAACAGCTTCCTGGTTTCCTGGAGCTCACGAGGGAGGACCAGATTGCTCTGTTGAAGACGTCGACCATTGAGATTATGCTGCTAGAGACATCTCGGCGGTACAACCCAGCTATCGATAGCATTACGTTTCTGAAGGATTTCAGCTATAATAAGGAGGATTTCGCCAAAGCAGGGCTTCAGTTTGAGTTCATAAACCCCATCTTTGAGTTTTCAAAAGGAATGAATGACCTACACCTGGACGAAGCAGAATACGCCCTGCTCATCGCCATCAACATCTTTTCTGCAGATCGGCCAAACGTGCAGGACCATGAGCTGGTGGAGAGGCTGCAGCAGCCCTACGTGGACGCGTTGCGCTCTTACATCATGATAAAGAGATCAAATGATCATTTGATGTTTCCCCGCATGCTGATGAAGTTGGTGAGCCTTCGTACACTAAGCAGCGTCCACTCGGAGCAGGTTTTTGCCCTTCGCCTCCAGGACAAGAAGCTCCCCCCGCTGCTCTCTGAAATCTGGGACGTCAATGAGTGACCGCAAACCTGATATCCCACTCTTCCTGAAGCCTGAGAGGGACACGGCATCCAGCAGGACCACTGACTCCTTTCTGCCCATCTGGTCAGGGATTGGTTATAGCGTtgagagtttttatttttatttttttctctcgtGGGAGGAGAGCACCATTGCCCAATGCTCTGAAACGGACTGCTAAATGGGTTTGTGTGTTCGTGAGGAGGAACATCAACACCTAATTGTCTTTTTGTTGTTCTTACTTTTGTGTAGATGCTGACATGATCATGGCGATGTTAAACACCAGCATCGGGCTCTTTAGCCAGTCTTCTTAGATATAATATTTGTtgaaggggaactatgcagtttttttttagcttaatttaccttaacagCTTCGGAGACATTGGAATGGTtagatgactttttttttttcgagttgaatggtggccGTCTCGCTCCCTCCCCCCTAGCGCCtatgagcggaaaaaccacccttgcaacctTTGGCCGGCGGGCCaccggcctcagcgtcaggaagtatcgcgtgatatcaggtcttgcgatgtaacgaattgcattaggcactgcacacatacagcaaccggctagctataagaacatggtagcgatggagtttttcacactacctaaagcattgtcggaggaacagagtgcagaggaaacggcagactggcCGAGCGAGTTTTTACAACAttgttgccaaatatctattccaaagctgtagggggagctctatagagaaacctgcgagcaaaaagcgaagagattgccaaaactgcatagcgccccttttaAAAGTTATGTCAATTTCTAGTGCAGTTCTATACTCATCCTCTAAATGCTTATAATCTGAGCAGGTCTTGGCTGTGGCTGCTTCAAACGTCAGGATTACAGCTGCACATTTGGTTGAAATAGTGATCTTTGCAGTCGTGCAATAGGTGGAAATAGATGCCGAGTTAAGCATGAGCAGACGCACATCTGCTGTTTACTTTATTGATGTTAGGGTAAAATGGTAGGCCATCTGGTTGGTGTTGTGCATTGTGGTGTGGCAACAAATAGTTTGTTCCTTTTTGGAGTAAGTGCAGAAATCAAAAGGTTTGTGTAGTCGCTCAGGTAAAGTTACGGAAGTAGACCTCTCGGAATCGGAGGCTTCTTTAATTTCCATTCGATTACTTTAGTTTCCTTCCAAGTGCATAAGGGACCTTTTTGGTCATTTATAGATTCATCCATTAACGGTCAGATCCATTAACTTTCATgtaatttgtatatttattttcacAAGAAAAATGTATAGAGTGCACACATAGATTGTACAATCACATACTAATGCACAAATAAGTAAAACTCTGCAGAATGTGCCCTCATTTACAGGAAACAGTCTTTTTTACACATAGCACAGGTACCTTGAAATGGGCGATACTAATGTGTCTTCAAATTCCATGTAAAGGTTAAGTGTAAAAAAGAAAGTATGTCAAGCTACCATCTCTGTGACCTTCTtaacaaaatgaataaaaatccATCCTGACACAGTTGTATTCTGAATCAAAATAGAAAAACAATTGCCTCTATTAACACCTTTTTTCGTCACGTTTGTGAGATGTACTATTATTGATTTCATTACAAAGCAGTTCGGTTATGTTcatattttgatttgttttatcaCTATCATTTAAAGTTGTGAGAAATGTATAAGTAACATACATATAGTTTGAACATATGGAGAGTttgacttccttttttatttttgataatACTGTATGAATGCCACTGAGGAAAACGTGTACAGTATAGCTGAATATCGGGTGGAAAACTTCTCTTGATCTAAAGGTCTACCATGGTCCGAGTATCTTCCTTGAACAGGTACTCGACGCCACACAGCTTTAACTGGTCAGATTTTGGAAAGCCTCtctaagaaaaaaatatataccaaAATCTTTATCGACAGGGAGCAGAGAACAACAGGAAATGAGTAGAAACATTAACATTTGGTGTACTCATGCTGTTTTTTTCCATGCGTTCTCCTGTGCAGTGTAAACTTGATATGCATAACGGAtgataaagaaatgtcaatgcAAAATTA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638783.1 lncRNA downstream 102783 14692209 ~ 14708662 (-) True LOC120556013
TU36474 lncRNA downstream 105229 14703059 ~ 14706216 (-) True G27395
TU36413 lncRNA downstream 198116 14613115 ~ 14613329 (-) True G27344
TU36407 lncRNA downstream 231438 14578811 ~ 14580007 (-) False LOC120556476
TU36403 lncRNA downstream 233650 14573615 ~ 14577795 (-) False LOC120556357
TU36523 lncRNA upstream 26331 14854725 ~ 14862463 (-) True G27425
TU36531 lncRNA upstream 61383 14889777 ~ 14890063 (-) True G27433
TU36536 lncRNA upstream 121184 14949578 ~ 14949985 (-) True G27438
TU36538 lncRNA upstream 124291 14952685 ~ 14953344 (-) True G27440
TU36539 lncRNA upstream 125144 14953538 ~ 14953891 (-) True G27441
XM_039795302.1 mRNA downstream 6678 14740192 ~ 14804767 (-) True madd
XM_039796067.1 mRNA downstream 157261 14638986 ~ 14654184 (-) True muc15
XM_039796120.1 mRNA downstream 231434 14578027 ~ 14580011 (-) True LOC120556476
XM_039794112.1 mRNA downstream 561113 14225777 ~ 14250332 (-) True lingo1b
XM_039794094.1 mRNA downstream 657997 14101129 ~ 14153448 (-) True kcnq1.1
XM_039795469.1 mRNA upstream 49628 14878022 ~ 14881139 (-) True LOC120556084
XM_039795631.1 mRNA upstream 189170 15017564 ~ 15043882 (-) True LOC120556194
XM_039795632.1 mRNA upstream 189170 15017564 ~ 15043125 (-) False LOC120556194
XM_039795748.1 mRNA upstream 225234 15053628 ~ 15078830 (-) False cfap70
XM_039795747.1 mRNA upstream 225234 15053628 ~ 15078830 (-) False cfap70
TU36388 other downstream 341100 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 1522181 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 1715679 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 2506621 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 2849673 11960701 ~ 11961772 (-) True G26891
TU36517 other upstream 14319 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 811375 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 2679729 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 2681556 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 2681734 17510128 ~ 17513168 (-) True G27925

Expression Profile