RNA id: XM_039794713.1


Basic Information

Item Value
RNA id XM_039794713.1
length 1542
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120555721
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14852285 ~ 14864789 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacactatacccTAGGCTAGCCTACACCTCGTTTTCTTTAACAGTAAAGAAAATGTAAGTGGTTATCTGAGCCGCCGTTAGAGGGCAGACTATCCCGAGGCAAAACAGGAAGTTGAAGAGgatatacatttttacttcGCCGAGGAAGAAGCGAACGAAAACAATCACAAACCGACCCGCCAGTCGGTTCTTTCTCCTGCACGTGTTGGATTCAGCATTATCTCTTCGTTTCGACCAAAAGGACACCATGCCTGTTATTTGTGCTGCAATAGGGTGCAACAATAAGTTTGTCAAAGGGTCGGAAATCCGATTCTACAGGTTCCCACTCAGCAAACCTCAGCTTGCCAGCAAATGGGTACAAAGCCTGGGGATGAAAAACTTCATCCCAACTGCCAACACCTGCCTCTGCTCAGAGCATTTCAGGACCGACTGCTTCAGGGATTACAATGGCAAACAGTTTCTGAGGGAGGATGCAGTGCCCACCATATTCACCCAGGGGCAGGATTCATCAAAGATTGAACTGCGTAAAAGAGGGGTGGTACCAAAGGAGACAAATGTTGCAAATCAAACGGGAACGCAAGCAGAAAGAGACCGAGCGAAAGAGGGCGCCAGTCTACGCAGGGAAAAAAGAGGAGGAATGAGGGGCGGACGAGGAGGCCGTGGAGGAAAACAACCTTCTGACAGGCAGGCTGTTGGAGCCAAGAGCAGAGTGTACGACAGCAAAGGCCGACTGCTCTCCAACAACAAGGACATGTGTGACTGTCTGGACGTGGACTGTATGGGCTGCTTCTACCCGTGCCCTGACTGCGGCTCACGCAAGTGTGGCGTCGAGTGCCGCTGCGACAGGAAGTGGCTTTACGagcaggtggaggtggagggtggagaGATCATCCGGAACAAGTTTGCTATTTAGTTAACGACTCTTTTTGGGGACTTCTGGGAATAGCGCCCTGAATTCCGTTGCCAGTCAGGCTGATGGACCAGTTTAAaactgatatatttttttttaaaggactcTTCCACAATGTGCACTGCTATTTATCTGCCCGTGTTGGATGTGCTTGTTGTTGCTCTTAAAATTGTTGAGTGTTccattttttaagctttttatttcttagataattttttgggtatttttaggactttattgacaggacagctgaagaaatgaaaggggggagagagagagagagggggaatgacatgcagcatagGGCCgcagtcgaacccgggcccgttGCGTctaggagtaaacctctatacatgggcgcccgcgctaccaactgagctagcCGGGCGCCCTCCAGTTAATGTTTTAACGTGCCATTCTCTGTTAAGAAACTCTTTTCTAAATGTTTAATGTCTGCACTGTAACATCTGCAGAGGTGAGACACACTTACCCTGATtgtttaatgtccaactgtctCAGGTGAAATCCCAAATTCCACTTTGTCCCAACGGGTTGCTGAAGTCTGTGTAGTTTAATAATTCATTTTTGTTCTACTTGGATTATTAAAGAAGTGAAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36425 lncRNA upstream 117140 14733915 ~ 14735176 (+) False bbox1
TU36433 lncRNA upstream 120670 14730817 ~ 14731646 (+) False G27358
TU36436 lncRNA upstream 120670 14730817 ~ 14731646 (+) True G27358
TU36427 lncRNA upstream 168200 14683833 ~ 14684116 (+) True G27356
TU36395 lncRNA upstream 275066 14576443 ~ 14577250 (+) False LOC120556358
TU36528 lncRNA downstream 86086 14950875 ~ 14953193 (+) False kcna4
TU36530 lncRNA downstream 92711 14957500 ~ 14957867 (+) True G27432
XR_005638806.1 lncRNA downstream 134915 14999704 ~ 15000287 (+) True LOC120556117
TU36548 lncRNA downstream 151795 15016584 ~ 15017505 (+) True G27449
TU36556 lncRNA downstream 183088 15047877 ~ 15053619 (+) False LOC120556271
XM_039795300.1 mRNA upstream 117569 14708562 ~ 14734747 (+) True bbox1
XM_039795301.1 mRNA upstream 146082 14702979 ~ 14706234 (+) True fibinb
XM_039795756.1 mRNA upstream 389023 14283159 ~ 14463293 (+) True luzp2
XM_039795637.1 mRNA upstream 757995 14092864 ~ 14094321 (+) True cdkn1ca
XM_039794849.1 mRNA upstream 796822 14048556 ~ 14055494 (+) True traf6
XM_039795511.1 mRNA downstream 24601 14889390 ~ 14965062 (+) False kcna4
XM_039795510.1 mRNA downstream 24601 14889390 ~ 14953245 (+) True kcna4
XM_039795749.1 mRNA downstream 183113 15047902 ~ 15053622 (+) False LOC120556271
XM_039795750.1 mRNA downstream 183451 15048240 ~ 15053622 (+) False LOC120556271
XM_039795020.1 mRNA downstream 215005 15079794 ~ 15154115 (+) True ddb1
TU36145 other upstream 1614497 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 1741977 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 2820588 12031621 ~ 12031728 (+) True LOC120556595
TU35313 other upstream 4992316 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 5247880 9566831 ~ 9604436 (+) False adamts17
TU36647 other downstream 576688 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 610375 15475164 ~ 15486421 (+) False LOC120556001
XR_005638756.1 other downstream 2859759 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 3697106 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 4622457 19487246 ~ 19487533 (+) True G28581

Expression Profile