Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073528 |
| length | 812 |
| lncRNA type | retained_intron |
| GC content | 0.42 |
| exon number | 5 |
| gene id | XLOC_037366 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 41218967 ~ 41247197 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0060337 | type I interferon signaling pathway | biological_process |
| GO:0019221 | cytokine-mediated signaling pathway | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0042127 | regulation of cell population proliferation | biological_process |
| GO:0006952 | defense response | biological_process |
| GO:0007259 | receptor signaling pathway via JAK-STAT | biological_process |
| GO:0043434 | response to peptide hormone | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030616-23 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasm and nucleus. Is expressed in cardiovascular system; intermediate cell mass of mesoderm; kidney; and lateral plate mesoderm. Human ortholog(s) of this gene implicated in breast cancer (multiple); immunodeficiency 31A; immunodeficiency 31B; immunodeficiency 31C; and prostate adenocarcinoma. Orthologous to human STAT1 (signal transducer and activator of transcription 1). |
| ensembl_id | ENSDART00000145312 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073518 | lncRNA | upstream | 157587 | 41080094 ~ 41083181 (+) | False | XLOC_037363 |
| TCONS_00073517 | lncRNA | upstream | 157587 | 41080094 ~ 41083181 (+) | True | XLOC_037363 |
| TCONS_00074931 | lncRNA | upstream | 1375096 | 39863253 ~ 39865672 (+) | True | XLOC_037353 |
| TCONS_00073476 | lncRNA | upstream | 2622437 | 38615603 ~ 38618331 (+) | True | XLOC_037344 |
| TCONS_00073469 | lncRNA | upstream | 2769961 | 38470041 ~ 38470807 (+) | False | XLOC_037341 |
| TCONS_00073533 | lncRNA | downstream | 228434 | 41474942 ~ 41479386 (+) | True | XLOC_037368 |
| TCONS_00073534 | lncRNA | downstream | 263440 | 41509948 ~ 41579002 (+) | False | XLOC_037369 |
| TCONS_00073535 | lncRNA | downstream | 263440 | 41509948 ~ 41598827 (+) | True | XLOC_037369 |
| TCONS_00073541 | lncRNA | downstream | 541709 | 41788217 ~ 41806355 (+) | True | XLOC_037375 |
| TCONS_00075180 | lncRNA | downstream | 855693 | 42102201 ~ 42108086 (+) | True | XLOC_037379 |
| TCONS_00073526 | mRNA | upstream | 13198 | 41224100 ~ 41227570 (+) | False | XLOC_037366 |
| TCONS_00073521 | mRNA | upstream | 32425 | 41156287 ~ 41208343 (+) | False | XLOC_037365 |
| TCONS_00073530 | mRNA | downstream | 213251 | 41459759 ~ 41470408 (+) | False | XLOC_037368 |
| TCONS_00073531 | mRNA | downstream | 213264 | 41459772 ~ 41479522 (+) | False | XLOC_037368 |
| TCONS_00073532 | mRNA | downstream | 228115 | 41474623 ~ 41481650 (+) | False | XLOC_037368 |
| TCONS_00073537 | mRNA | downstream | 366134 | 41612642 ~ 41681053 (+) | True | XLOC_037371 |
| TCONS_00073539 | mRNA | downstream | 443645 | 41690153 ~ 41741420 (+) | True | XLOC_037373 |
| TCONS_00073510 | other | upstream | 343585 | 40895771 ~ 40897183 (+) | True | XLOC_037359 |
| TCONS_00073509 | other | upstream | 343956 | 40895649 ~ 40896812 (+) | False | XLOC_037359 |
| TCONS_00073505 | other | upstream | 962505 | 40278147 ~ 40278263 (+) | True | XLOC_037355 |
| TCONS_00073504 | other | upstream | 1103156 | 40137497 ~ 40137612 (+) | True | XLOC_037354 |
| TCONS_00073499 | other | upstream | 2227333 | 39011226 ~ 39013435 (+) | True | XLOC_037351 |
| TCONS_00073529 | other | downstream | 2949 | 41249457 ~ 41266843 (+) | True | XLOC_037367 |
| TCONS_00073536 | other | downstream | 346988 | 41593496 ~ 41593610 (+) | True | XLOC_037370 |
| TCONS_00073538 | other | downstream | 436418 | 41682926 ~ 41683010 (+) | True | XLOC_037372 |
| TCONS_00073540 | other | downstream | 487025 | 41733533 ~ 41733610 (+) | True | XLOC_037374 |
| TCONS_00073545 | other | downstream | 743578 | 41990086 ~ 42038319 (+) | True | XLOC_037377 |
