RNA id: XM_039794729.1


Basic Information

Item Value
RNA id XM_039794729.1
length 9757
RNA type mRNA
GC content 0.53
exon number 44
gene id myo9aa
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15887011 ~ 16017712 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCGTGAACGCGCACTGCCGCGCGTCCCCAGAGCGGCCGCACTGATTAGCTAGGCAAAGTGGAGTTTTCAGCGACCGTCACCGAACTGCGAAGGACtgctttttaattacatttcacTACAGCGAACACACacggatacaaaaaaaaagcgcAAGTATTCAGCGCGGAGTTGTATTTCGAGGAGTTGTTCGGAAGCAAACGGcgggagagagaagaaaacaaattaattcaGTGGGAATGCAGGGAATTAAATAGAGACTTAGGCATTTCGAGTGgctacaagtgtgtgtgtctctgcaacCCATCCTGAGAGCAGACGGAAAACTTGAGTCCCACTTACAACCGACTTCAGCGTTCACTTCTGGAGTGGTAATGTCTTGAATCGGTGGCCTTTCTCCAGCCCAGTGAAGGACGAGCCAGTGCCGGGCTGCTGCTAATGGGAACTCCTGCTCTGCCATGAGTGCTCGCGATGGCGTTGGTGGCATGGGCACCCTGGGCCGGCGGCCGCGCTTCGAGAACTCCGAGTTCACCGTGCGCATCTACCCAGGCGCCCTGGCCGAGGGCACCATCTACTGCCCGATCAGTGCCCGCAAGACCACCACAGCCGCTGAGGCCATCGAACGTGTAATTGAACGCCTGCAGCTGGACCGCACCAGGTGTTATGTTCTGGCTGAGGTGAAGGAGTTCGGTGGGGAAGAATGGATCCTGAACCCCTGCGACTGTCCCGTGCAGAGGATGATGCTCTGGCCCCGGGTGGCACTAGAGCACCGCCCGCTGTCTGGCGGCGAGGATTACCGCTTCCTCCTAAGGCAGAAGAACCTAGACGGCTCGATTCACTATGGCGGCAGCCTCCAGATGTGGCTGCAGGTCACAGAGGAGCGCAGGCGCATGGTGGAACGTGGACTACTGCCACAGCCCGAGGCTCAGGGCGACCAGGCCGATCTATGCCGCCTGCCGGAGCTCAACGAGCGCTCGCTGCTGGACAACCTGCGCTCGCGCTTCCGCCAGGAAAAGATCTACACGTACGTCGGAAGCATCCTCATCGTCATTAACCCCTTTAAGTTCCTGCCCATCTACAACCCCAAGTATGTGAAGATGTATGATAATCATACACTGGGTGATTTGGAGCCACATATTTACGCCGTGGCGGATGTGGCGTACCACGCCATgctgcagaaagagagaaatcaGTGCATCGTTATATCTGGGGAGAGCGGCTCTGGGAAGACGCAAAGCACAAACTTTCTCATTCATCATCTGACCGCCCTCAGCCAGAAGGGCTTTGCCAGCGGAGTGGAGCAGATCATCTTGGGGGCCGGGCCAGTACTAGAGGCATTTGGGAACGCAAAGACAGCCCACAATAACAACTCGAGTCGCTTTGGCAAGTTCATTCAGGTGAACTACCAGGAGAGTGGCACTGTGAGAGGAGCATATGTGGAGAAATACCTGCTGGAGAAGTCGAGGCTGGTCTATCAGGAGCACAATGAGCGaaacTACCATGTGTTTTACTACCTGCTGGCAGGAGCGAGCGAAGAAGAGAGGAAAGCCTTTCACCTCATGAAGCCTGAAGAATACCATTACCTCAGTCAGATGACAAAGTCAACCCACCAACCGCACTGGGACAGTTACTGTGAGAGTGAACCGgACTGCTTCACAGTCGAAGGAGAAGACCTAAAGCATGACTTTGAGAGGCTTCAGCTGGCTATGGAGATGGTGGGCTTTCTTCCTTCCACGCGCAAACaGATCTTCTGCCTGCTGTCGGCCATCCTTCACCTGGGCAACATCCGCTACAAGAGGAAAACCTACAGGGACGACTCGATCGACATCTGTAACCTAGAGGTGCTGCCTGTCGTCTCAGAACTGCTGGAGGTCAAGGAAGAGATGCTGTTTGAAGCTCTGACAACACGGAAGACCGTTACTGTCGGGGAGAAGCTGATTGTCCCTTACAAACTGTCCGAGGCCGGTACGGTGCGAGACTCCATGGCGAAGTCCCTGTACAGTGCTCTGTTTGACTGGATTGTCTTCAGGATCAACCACGCTCTGCTCAACATCAAGGACCTGGAAGAGACCACCAAGATCCTGTCCATTGGCGTGCTCGACATTTTTGGGTTTGAGGATTATGAGAACAACAGCTTCGAACAGTTCTGCATCAACTTTGCCAACGAGCGTCTCCAGCACTACTTCAACCAGCACATCTTCAAGCTTGAACAAGAGGAATACAGAGCAGAGGGCATCAGCTGGCACAACATCGACTACATCGACAACACAGGCTGCATCAACCTGATCAGCAAGAAGCCCACAGCGCTGTTTCACCTACTGGATGAAGAGTGCAATTTCCCTCAAGCCACCAACCAGACCTTGTTGGATAAGTTCAAGCGGCAGCATGAGGGGAACAGCTACATCGAGTTCCCTGCTGTCATGGAGCCCGCCTTCATTATCCGACACTACGCGGGCAAGGTCAAGTACGGGGTCAAGGATTTCAGAGAGAAGAACACAGACCACATGCGTCCGGACATCGTAGCTTTACTAAAGAGCAGCAAGAACGCCTTCATCTGCGGGCTGATGGGCATCGACCCGTCAGCCACTTTCCGCTGGGCGGTACTCCGAGCCTACTTCAGGGCCCTGGTGGCTTTCCGAGAGGCTGGGAAGAGACACACGCAGAAGAAGACTGGGCATGATGACGCTGCTCCCTGTGCAGTTTTGAAAAGTGTGGATAGTTTTAGCTTTCTGCAGCACCCTGTGCATCAGAGAAGCTTAGAGATCCTGCAGAGATGCAAAGAGGAGAAGTACAGTGTGACCAGTAGGAGTCCACGTACCCCGCTGTCAGACCTTCAGGGAAGCAACACCATCAACGAGAAATCCCCACGGAGTTCCCCGGGCCTGGGCTGGAATGGGCACGTGGGTCGACTGAGCCGCTTGTCATCCAGCAGCTCCACCACAGAAGAAGACGGCATCTTTGTCAACTCTGCCAGCAGTAAACTCCTCGAGAGAGCCCACGACATCCTCATGAGGAACAAAAACTACAAATCTAAGCCAGTCCTTCCGAAGCATTTACTGAACGTCAAGTCGCTGAAGTATCTCAGCAAACTGACGCTTCACGACCGCATCACCAAGTCACTGCTTCACCTCCACAAAAAGAAGAAACCACCCAGTATCAGCGCACAGTTccagGCCTCCCTCAATAAGCTAATGGAGACTCTGGGCCAGTCTGAGCCTTATTTTGTCAAGTGCATCCGTTCCAATGCTGAGAAGCTGCCCTTAAGGTTTAATGATAACCTGGTGCTGAGGCAGCTGCGTTACACAGGTATGCTGGAGACTGTGCGCATCCGGCAGTCGGGCTACAACATAAAGTACAGCTTCAAGGATTTTATCCATCACTTCTGTGTGCTGCTCCCAGAGGGCACCAGTGCCACCAGAGAGGGCATCCAGCAGAGTCTGGACCAGCTGGACCTCGAACCAGATGGCTACCAAGTGGGAAAGACAATGGTGTTTCTGCGGGAGGCTGAGCGTCAGCGTCTGCAGGCCGTACTCCACGCTGAAGTTCTCCGACGCATCGTCACGCTGCAGCGGCGATTCAGAGTCCGGCTGGAGAGGAAGCAGTTTGTCAGAATGAGAGAAGCGGCGATCTGCATCCAGAAATGGTGGCGTTTGTACCAGTCCATAGAAGAGGAGGATTATGACCCTAACGTCCAGGAGAGGGCAGCTCTGTGTCTGCAGACACACTGGCGAGGTTCCAGGGAGCGTCAGAAGTTCAGGCTGTGGAGGGAGGCTGCTCTGGTGTTACAGAGGGCATGGAGGTTGTGGCTCTACCGGCGCTGCACAGCAGCTCTGCTCATTCAGACGGCCTGGCGCTGCCATCAAGCCAGGGAAGCCTACTTGCGTCTGTATCATGCTGTGGTACAACTCCAGGCAATAAGCAGAGGATTCCTCGCCAGGCAGAGCTTCAAGAAACTGCGAGAACAGACGCTGAGGGCCAAGAAGGAGCAGCAGGAGAAGCTGCTTCAACTGCAGAATGGCCAGGTGAGTCGCTcaccagaggaagaggaggatccGCCAGAGAGGATCATGGGGTTGGACCTCAGCACGTGGGAGGATCGCTCCTACGAGCAGCGAGAAAGGAGCCTCCAAACCCTCAGCAGCCACGAGGGCGCGGCTCAAGAGGAAGGAGAAGACGGAGAGCATGCTGGGACCAGAGAGAGTCCCTCTAAAGTGCAAACTGAAGCACCGGACTCGATCCAGACCTCCGCCGTGGTGGTGCGAGAGAGGTCCAGAACTACAGACGAGCCCAGCCAGAAAACCACTCGGGCCAAGAGAGAGAGCCGGCGGATGAGAGAGTTGGAGCAGGCCAAGTTCAGCCTGGAGCTCCTCAAGGTGCGGGCGACCGGCGGCGGACCCTCATCTCCGTCCGAGGAACGCCGCTGGTCTCTGGAGCTGGTGCCCCCTGCAACGCCACCTCTCCCTTCGCCCCAGGGCACGCCCGACAGCCAGAGCTCCAAAGGCAGCTTTGAGCTTCTCAGCATGGATGACGAGCCACCCAAGGCTGTAGAAGAGGTGACCGACAGCGAGGACCTCTGCTCCCCTGTAGCTCCGGAACCTGAGCCTCATGTGGAGGTTGTTTCAACAAGCCCTAAGCCAGTTGAACCACATAGGGCAGTGGTTTCTGATGCGGGCAGCCAGGGCCAGACCAAAATGGATCTGGCAGCCCCCTCTGCCCCCGCACATCCGCCCAAAATCGAGAACTACCTCCCTACCTTTTACGTCCCTGCTAGCGAGGGCAGCGCAGTCGTCTCCCGTCGTCCCGCCGGAGAGCCCGAACCAACCACGGAGGCGGCCGTCTCTACAACCACCACGGTTACCAAGACTCTCAAAGAAAGGCGGGAGTCATCGCGTCGCCCAGTGGTGGTGGTCATCAGCATGCAGAAAGAAACGCCACTGAGCCAAGAGCTGAGTGATATCGTCCGTCCTCCTGTAGAGGTTCGAGATCGGGCATCCCGGACaggggagaagccagacccagcTCCCGTCCCCGTTCCTACCGCTGCCCCTCAGGCTGACCAGGCTATCATCGAGAAGCTGGTGCGACTGAACGAGGAGAAAGAGGTGAGGCAGCGCAATCAGCGGCAGCAGAACGAAAAGGAGATGATGGAGCAGATCAGACAGCAGAAAGAAGTGCTGGAGCGCCAGCGTCATTTCTTCGCTCAGTACGAGAGAGACATGTTTGAGAAACAACGAGGAGAAGCTCTGCACAGAATACAGCAGAGTCGGCAGGGTGGACAAGATGTCGGCGGAGCCGCAACCTCCGGAAAGCCCCTTAGACCCAGTTCCTTGCTAATTGAGAGGACAGCGGGGCTCGTTCCTCATGCCAGAACGCAGTCCGTCTCCACCGGCCCGTCAGTGCACTCTCCGCCGGGCGTAGACCTCCAGGGCAGCGCCCCTCACCCCCAGCTGCCTCCTCCACCTGCTTCTGTTCCCAGAGAAAGACGCAAGGAGAGGAGGCCTGTTGCTGAGGGCTGGGCACCCAAACTCACGCTGGAGTCtaaagatggaggaggaggaaccAGATCCAGAACAGCGACCAAGAAGCCGCCAAGTAGTCAAGACGACACAGTTAGTACGACGGACAAGCCAAACATCTTCTTCTCTCCAAACGACAAAGTCACATTTACAAAGTTTGACGGCGATGCCGTCACTAAAGAAACCCCTGCAGCCATTCCCAGAGAAGGACCATCACCAGTCTCCAAGCCCTCTAAAGGAGCAAAGGTTGGCAGAGCGGGCCAAAAAAAGAAAGCCAGAATGGCACGGACCCGCTCCGACTTCCTCACCCGCGCCCCCTCCCTCTCAGTTGGGGGCGATTCAGACGAGGATGACTATGATGGCGACAGCCCCGTCAACCCCCGTCATTACACTCTACCCCTCTCCAAACAGAGCTCCACGGACGCGGGCTTAAGAAAGTCCTGTTTCAGTGACTCAGACATGCCTGCAAGCTCTGAGGAGCAAAAGAAGATTCACAAAGCCATGTCGTCAGGAGATTTGGTCAAAGTGGACTCCATGCGCAAGAACTCGCAAGATGGAAGGGTCCGTAAGATGCGTTTCTGGGGCAAGACAAAGTATGGGGATAAGAAGACATCCAGAGAAAAGTTGATCTGTGGGGCTGATTCCATGGATGGAGATTATGGAGACACTGGGCCATTGCTGGGAGACGGCCAGGAGAACATGTCGCCCCCCTGCAGTCCTGACCTGATGTTGGATCGAGGGTTCCGAGACTTGAAGGAGAACAAGGAGCCGTCTCCCAAGGTGAAGCGACGGCGCAGCGTTAAGATCAGCAACGTGGCTCTGGAACCCGCTCAGTGGCAGAACGACGCGCTGCAGATCCTCACCTGCACCAACGACTACAGGAGCATGAACGACTTCCTCATGAAGAAGATCAACGACTTGGACACGGAGGACAGTAAGAAGGACACCATGGTGGACGTCGTGTTTAAAAAGGCTTTGAAGGAATTCCGTCTGAACATCTTCAActcttactccacagcacttGCGATGGACGACGGTAAGAGCATCCGTTACAAAGACCTCTACGCTCTGTTTGAGCAAATCTTGGAGAAGACCATGCGGCAGGAGCAGAGGGACTGGAGAGAGTCTCCTGTCACAGTGTGGGTCAACACCTTTAAAGTTTTCCTGGATGAGTTCATGACTGAATACAAACCTCTGGACAGCACACTCAGCAAGCAGGCACCTAAACCTGAACGCAAAAAACGGAGGAAAAAGGACACAGACATTGTGGAGGAGCATAACGGCCACATCTTCAAGTCCACCCAGTACAGCATCCCCACATACTGTGAATACTGCTCATCACTCATCTGGATGATGGACCGCGCCTGCGTGTGCAAATTGTGCCGATACGCCTGCCACAGAAAGTGTTGCCAGAAGATGACCACCAAATGCAGCAAGAAGttTGATCCAGAGCTTTCCTCCAGACAGTTCGGAGTGGAAGTTTCCCGTCTGACTAATGACGAGAGGACGGTGCCTCTGGTAGTGGAGAAGCTTATCAACTACATTGAGATGCACGGCCTCTACACCGAAGGAATATACAGAAAATCTGGCTCGACCAACAAAATTAAGGAACTCAAGCAGGGACTCGACACAGACGCCGACAGCATGAATCTGGACGACTACAACATCCACGTCATCGCTAGCGTTTTCAAGCAGTGGCTTAGAGACCTGCCTAATCCTCTGATGACATTTGAGCTGTACGAAGAGTTTATACGACACATGGCTTTGCAGGATAAGAAGGATGCGATTAGAGGAGTGTATTCCGTTATTGACCAGCTGAGCAGAACTCACCTAAACACTCTGGAGCGTCTCGTATTTCATCTTGTCAGGGTCGCCTTGCAAGAGGATACAAACCGTATGTCAGCTAACGCCTTGGCTATAGTTTTTGCTCCCTGTATCCTGCGCTGTCCTGACACCATCGATCCAATGCAGAGTGTCCAGGACATCGGCAAGACGACAGCGTGCGTAGAACTTATCATTTGTGAACAGATGAATAAGTACAAAGTTCGACTAAAGGACATCAGTAGCCTGGAGTTTGCTGAGAATAAGGCCAAGTGCAGACTGACCCTCATTCGACGGTCGATGACAAACGCAGCTAAAAAGGGAAAAGGCCATGTACAGCGACTAAGCTACCACACACCGTCGCCTCCAGTAAGTCCCCGGCTGCCATCTGTGGCTCACCCCGTGATAGAAGAGAGTGGTGGTGAAGAGGGAGAGGACTTGTTTGCTCAAGTCTCAGAGCATCAGCAGGCAGCCATGCAGCAGGAGGAGAGAGTCCTGACAGAGCAAATTGAAAGCCTGCAGAAAGAGAAAGAGGAGTTGACTTTTGAAATACTGGCTCTGGAGCCACGAGCATCAGATGATGAAACCCTGGAGTCGGAGGCCTCTATCGGTACAGCTGACAGCTCTGAAAACCTTAATGTGGACATTGAGGGAACAATTTCTGACGTCTCTGAGAGAGGTCCAGTCTTGACGTCTCCGTGGCCCCGGAGATCTGACATGACGAGCCCCCGACGGCACGCTCTCCGCCGGCAGCCTGACTCCCTGGACTCTGTGGACTCTTGCTCCAGTGTTTCCTCCTACTCTTCCTCATCACATTTCCAGCcatcatcctcttcctcctctgccaCCACCCGGCGCTTTCGTTTCCACTCCAAGTCTCCTACCTTGGGCTCAGGTCCAGCCCAGGCCCAGGCACAAGCACAGGCCCAGGCCCAGGCTCTTAATGCGTCTCAAGCCTCCCGTTCAGACAGCATAGACAGTAGCCCTACAGGAGATCAGGAAAGCGCGTATGACGAAAGGCCCCAGTTTACCAGCCGAGGCACCTTCAATCCGGAGAAGGGCAAACAGAAACTTAAAGGGGCCAAGCATTCAACTCTGAGGCACTCCAGAGAAGGCAGTCGCCAAGGCAGGGACCCTCCAGACATACCACAGCAGCTGGTATTGTATGGCAGTAATGAATTCATGGTATGAAGAACACTGCGCCACCAAATCACTCCCTATCTAACTCCCTAGCAGGTGTATATGTTCTCAATTGGAGGTAACGCAATGGCGACGTATCTCCACTCCTTAAAGCACTCTTGCTTTGCCTTTCTTTCTTGAAGTCTGCAAAAAAGTGTCCCCAAGTGCCGTGTACAGTGTTTCCACCTCCAGAGGGGGGAGATGTTGGGCAGAGGGACAGGAATCGGTGGAAAGGCTCCTTTTCTGTGGACTAAACTGCCACCCATGCTCTCACAGTGCCTCGGGCAGCTCTTTACTCAGCGCCAAGAGGAGTCGCACTGAGCAGGAGGACAGAGAAAAGGGAATGTTTATGAGCTGGAAAGCTGAAGCATTGTACGACAGTAAATGAGAAGAAATCAGGCAACGTCAAGCGTCACGGATGTTACAGTGAACTTAAAGCTCACAATTATTAGCTGCTTTATGAGTTTACAGTTCATAACAATCAGTGTAAGCAGTGGTTGCTCTGTTACTACAAatttattttttcccttatttaaTAAGTTTTAATGTCACAGAAATTCTTTATAGCATTTAATATACAGGTATAAATACTGTACAAAGCCGGAACCCCAGCCTCTGTTGGGTAGTTGAAgtcatatttatcttttttttttttgagtatcTTGGACAGAGATGTACGGATTGGGGCAGTggatgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaaagagaaaaaccaCTTCATGTGTTTTAAGTTTGtgctgctttttttcccccttacaagGGAAATACCGCCATCAAAGGGACCAAGTCAGCTGGCGCGTATTCGAGCCAAAGGGGATCCCAGCTCTGTAAAGAATGACGGAATTTGTATGAAATCCCTGCATTCACTGCTTAACAGCCATACAACAATTGTAATTGTACAGTACAGTTCATATGTACAGTGTAGTGGACAAATGCCATTCTATTCATGAAACCTATTgttacccccccccccgactcCCAAACCCATCCCCACCTCCTGTCTCTAAAGTGTTTGCTCAGTAGCAACCAAGAAAGAACATAAAATCAGTATGTCTTCTGTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638713.1 lncRNA downstream 38312 15818610 ~ 15848699 (-) True LOC120555431
XR_005638712.1 lncRNA downstream 38312 15819463 ~ 15848699 (-) False LOC120555431
XR_005638714.1 lncRNA downstream 38312 15829888 ~ 15848699 (-) False LOC120555431
TU36736 lncRNA downstream 290144 15596613 ~ 15596867 (-) True G27594
TU36729 lncRNA downstream 340220 15546578 ~ 15546791 (-) True G27587
TU36829 lncRNA upstream 11175 16028887 ~ 16029172 (-) True G27659
TU36855 lncRNA upstream 53857 16071569 ~ 16073508 (-) False LOC120556162
TU36856 lncRNA upstream 56853 16074565 ~ 16074783 (-) False LOC120556162
TU36877 lncRNA upstream 149247 16166959 ~ 16168421 (-) True G27698
TU36904 lncRNA upstream 304251 16321963 ~ 16324191 (-) False LOC120555730
XM_039795209.1 mRNA downstream 2413 15872711 ~ 15884598 (-) False scamp2l
XM_039795208.1 mRNA downstream 2414 15872711 ~ 15884597 (-) True scamp2l
XM_039795206.1 mRNA downstream 14570 15856715 ~ 15872441 (-) True bbs4
XM_039795207.1 mRNA downstream 16100 15856715 ~ 15870911 (-) False bbs4
XM_039794921.1 mRNA downstream 99643 15600418 ~ 15787368 (-) False neo1a
XM_039795029.1 mRNA upstream 13958 16031670 ~ 16068535 (-) True gramd2aa
XM_039795033.1 mRNA upstream 13958 16031670 ~ 16068531 (-) False gramd2aa
XM_039795032.1 mRNA upstream 13958 16031670 ~ 16064584 (-) False gramd2aa
XM_039795031.1 mRNA upstream 13958 16031670 ~ 16064583 (-) False gramd2aa
XM_039795572.1 mRNA upstream 55158 16072870 ~ 16159882 (-) False LOC120556162
XR_005638870.1 other downstream 247051 15639769 ~ 15639960 (-) True LOC120556584
TU36517 other downstream 1043106 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1416666 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2597747 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2791245 13069996 ~ 13095766 (-) True G27075
TU37150 other upstream 1490411 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 1492238 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 1492416 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2200410 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 2364993 18382705 ~ 18383642 (-) True G28265

Expression Profile