RNA id: XM_039794736.1


Basic Information

Item Value
RNA id XM_039794736.1
length 1250
RNA type mRNA
GC content 0.43
exon number 6
gene id calml4a
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 16312723 ~ 16320946 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagtttaaaatgccaacacaaagaaagcagaaggtaacggacatctggcctaaatgagtgaaatccggtggaatttccgtcagcaacggagcaatcccggaagtggaacgtcaacgATATAGACTAACACTCAGACAACCTGGGGCCTGGGCCAGGGTTTGGTTCCCTAAGCAGTTTTGCTCCTTTTGCTCACTTTGCAACTTTGGTAGTCCAGCCTTAAGTAAAAACACAGACCAGCAGCCAGCAGCAACTGTTCTTaccatttgacaaaaaaaaaaaaatcagttacaCCAACTGTCTCTTAACCAGCTAAGCGAATGACAAAGTTGACCTTTTATGAACAAACTCAAGGTGGTGGACTTTAAACAGAGGCGGAGGGACAGGTGACGCAGACCACAGGGAACTCTCTTCTTCCTGGAAAGAAACCAAGCAACTGCAAAAATGGCTAAATTCTTCACACCAGTTCAAATCAATGAGTTGAAGGAGTGCTTCTCCCTGTATGACAAGAAGCAAAAGGGCAAGATAGTTGCCAAAGACCTGATCACAGTTATGCGCTGCCTGGGTACAAGCCCCACGTTTGGTGAAATTGAAAGACATCTGCAAGTTCACAAAATCGAAAAGACAGGTGAGCTGGACTTCTCTACGTTTCTGATGATGATGCACAGACAGATGCAACAGGAAGACCCCAAGACGGAAATCCTGGAGGCCTTGAGGATGACGGACAAACAGAAGAAAGGATACATCCAGGCATCTGAGCTCCGGGCCAAGCTCACCATGTTGGGAGAGAAACTAACAAACAAAGAAGTGGATGATCTCTTCAAAGAGGCAAATGTCAAGTCAGACGGGACTATCAACTACGAAGAGTTCACCCAGATGGTGACGCTACCACCTGTGGATTATTGATTTTTCATCCATGTTGGGGTACTGGCTTTACATACACTGAACTTCAGAAATCACAAACTGTATTAAATCTACGTGATGTTGGCAGACTATTCTCTGAGTTTTAAATTAAATGCAGAACCTGTTCCCATAGCTTTCCTCTATGACTGCACATTGTGAAGCGCTGTCATTATACCGTATTGTAATGAACACTATATGATTTTGCATGTTATTCTTTAACGGGATCACACTTGAAAAGCAAGACATTTTTCGTCAAGCCTGACCCCTCCAcccaaacaaatgtaatgtccagtttgacattttgtgtaTGTATTTCTGCATGCGATATattaaatctataaaaaagtaG

Function

GO: NA

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36882 lncRNA upstream 13076 16299236 ~ 16299647 (+) True G27703
TU36871 lncRNA upstream 45066 16254323 ~ 16267657 (+) True G27692
TU36854 lncRNA upstream 153024 16159485 ~ 16159699 (+) True G27675
TU36853 lncRNA upstream 180684 16131181 ~ 16132039 (+) True G27674
TU36851 lncRNA upstream 230851 16081512 ~ 16081872 (+) True G27672
TU36887 lncRNA downstream 17441 16338387 ~ 16338772 (+) True G27706
TU36889 lncRNA downstream 30838 16351784 ~ 16351985 (+) True G27708
TU36890 lncRNA downstream 53167 16374113 ~ 16374342 (+) True G27709
TU36891 lncRNA downstream 63046 16383992 ~ 16384249 (+) True G27710
TU36892 lncRNA downstream 84582 16405528 ~ 16405729 (+) True G27711
XM_039794735.1 mRNA upstream 44 16301781 ~ 16312679 (+) True cln6a
XM_039794734.1 mRNA upstream 44 16301782 ~ 16312679 (+) False cln6a
XM_039796266.1 mRNA upstream 291080 16018408 ~ 16021643 (+) True senp8
XM_039795542.1 mRNA downstream 90087 16411033 ~ 16412571 (+) True LOC120556141
XM_039794154.1 mRNA downstream 174889 16495835 ~ 16544791 (+) False coro2ba
XM_039794153.1 mRNA downstream 174969 16495915 ~ 16544791 (+) False coro2ba
XM_039794155.1 mRNA downstream 201877 16522823 ~ 16544791 (+) True coro2ba
XM_039794156.1 mRNA downstream 201890 16522836 ~ 16544791 (+) False coro2ba
TU36678 other upstream 826302 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 866331 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 3074904 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 3202384 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 4280995 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 1403602 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 2240949 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 3166300 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 3176792 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 3177147 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile