RNA id: TCONS_00073533


Basic Information

Item Value
RNA id TCONS_00073533
length 576
lncRNA type retained_intron
GC content 0.46
exon number 2
gene id XLOC_037368
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41459759 ~ 41481650 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAGATAAAATGGTTGTTTCAGAGGTAAAAATCATGTTTGCCAGTTAATTCTTAGGTTAGAAATGTGTAGCATTGGCAGTTTGATTTGTGACCACTGAAAGGGGCTGTATGAGAATCCAGAGAAACTCAACATTTGCAAATGGTCTCTTAGCTTACTCTATCGCTTCTATCTGAAATGTTTGTATGTATTAAGTGACTCTTTCTGCCTTCAGTCTCTTCTACTCTTTCCTGGCTTTATTCCGGAGGAGGAGACGGCCCACTGTAAGGCTGCTGACTGAGGAAGAGTACAGAGAGCAGGGAGAGATCCACACCAGAGCCTCTCTGGATGAGCTGCGGGAATACTGTAACAGACCTGGCTTTCCTGCATGGGAAACAGTGCTGAGGCTCAGATCCCCACAAagGTTTGCAGAGTTTCTCCGTCAAGGCAGTCACATCACTCAAGAGGAGCATCAGAACCATGAGAATCATTACGGCCTTGGCGGTGCCTATTATGAGAATGTGATCTTCAACAACAGCAGCTCCAGCGACACTCAGTCACACAGAGAAGAAGCAGAGGACAATAGTGAAGACGAGAT

Function

GO:

id name namespace
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-413 Predicted to be located in nuclear inner membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear envelope. Orthologous to human NEMP2 (nuclear envelope integral membrane protein 2).

Ensembl:

ensembl_id ENSDART00000138722

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075179 lncRNA upstream 228434 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073528 lncRNA upstream 228434 41240768 ~ 41246508 (+) True XLOC_037366
TCONS_00073527 lncRNA upstream 234070 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00073518 lncRNA upstream 391761 41080094 ~ 41083181 (+) False XLOC_037363
TCONS_00073517 lncRNA upstream 391761 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073534 lncRNA downstream 30562 41509948 ~ 41579002 (+) False XLOC_037369
TCONS_00073535 lncRNA downstream 30562 41509948 ~ 41598827 (+) True XLOC_037369
TCONS_00073541 lncRNA downstream 308831 41788217 ~ 41806355 (+) True XLOC_037375
TCONS_00075180 lncRNA downstream 622815 42102201 ~ 42108086 (+) True XLOC_037379
TCONS_00074932 lncRNA downstream 678990 42158376 ~ 42158616 (+) True XLOC_037381
TCONS_00073530 mRNA upstream 4534 41459759 ~ 41470408 (+) False XLOC_037368
TCONS_00073524 mRNA upstream 227745 41218967 ~ 41247197 (+) False XLOC_037366
TCONS_00073525 mRNA upstream 227753 41218974 ~ 41247189 (+) False XLOC_037366
TCONS_00073526 mRNA upstream 247372 41224100 ~ 41227570 (+) False XLOC_037366
TCONS_00073521 mRNA upstream 266599 41156287 ~ 41208343 (+) False XLOC_037365
TCONS_00073537 mRNA downstream 133256 41612642 ~ 41681053 (+) True XLOC_037371
TCONS_00073539 mRNA downstream 210767 41690153 ~ 41741420 (+) True XLOC_037373
TCONS_00073542 mRNA downstream 342227 41821613 ~ 41979505 (+) False XLOC_037376
TCONS_00073544 mRNA downstream 434992 41914378 ~ 41979505 (+) False XLOC_037376
TCONS_00073543 mRNA downstream 434992 41914378 ~ 41979505 (+) True XLOC_037376
TCONS_00073529 other upstream 208099 41249457 ~ 41266843 (+) True XLOC_037367
TCONS_00073510 other upstream 577759 40895771 ~ 40897183 (+) True XLOC_037359
TCONS_00073509 other upstream 578130 40895649 ~ 40896812 (+) False XLOC_037359
TCONS_00073505 other upstream 1196679 40278147 ~ 40278263 (+) True XLOC_037355
TCONS_00073504 other upstream 1337330 40137497 ~ 40137612 (+) True XLOC_037354
TCONS_00073536 other downstream 114110 41593496 ~ 41593610 (+) True XLOC_037370
TCONS_00073538 other downstream 203540 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073540 other downstream 254147 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073545 other downstream 510700 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073546 other downstream 561171 42040557 ~ 42095177 (+) False XLOC_037378

Expression Profile

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