RNA id: TCONS_00073535



Basic Information


Item Value
RNA id TCONS_00073535
length 1240
lncRNA type lincRNA
GC content 0.38
exon number 3
gene id XLOC_037369
representative True

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41509948 ~ 41598827 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GGTCGAAGGCCAAACGTTGTTTTTTGGCGCTAATTCACCTCACCTGAAGTAAACAAACCTTTGGAAGCGAATGTGAAACTGAAACAAGGATTCATTCAAGGAATTCAACAAAGCTCcacaaagCCGAAAATTAAAATGTGATGATCACAACAAGTGGGCAGCTTCAATCCTCAGTGACATCACCGAGGAAACACCCTAATTATCAGGGTAAGGTTTCCGCCTGCAGGGGGCGatgttttacacacacattcaccagACGCTCTTCTCATCACAGCACCACAGCGCTCTGCCTCCAGCTTTAAGTGAGACTCGACCACACACTCTGAGACTACAGAAGACGAAGCCGCTGAGCCACAAATACCCCTGGAGGCCAAAGAAGGAGCCAGAGGTTTTCAGGATGAGGCCCAACGAGTGCCTGCAGGTACTGTACATGACATTTCAAATAGAGCTACTGAAAGTTAACCTTTTGTAGTTTATAAGAGTAACATTTTGCAGTATAATGCATGTCCACATTCAGACCAGCTAAAAACCATTTGGACGTTTTAATAATTACGAacgttaataattaatgtatctTTAGCAGCAAGTCAGCTTAAAAAGTATGCCGATATTGAATGTGATTCAAATGGGTTAAATCAAGACATCTTTTAAAGTGTAAAGGTTTTTGACAATATTACTGGTTTCATTTTTTCAGCAATGCAAATGCTGTCAGAAATTTTATTGGCCACACACACAAGATGTTTTTTGTGGTTTAAAAAGACTTTCCATTGGCGTACTGTGTTTTTTACCGCTTATTATATAGCCTTACCCCCAGGGACGTTGCTAGGGTTGAAAGAGATAAGGGGCTTAGCTCTAAAGAAGTTaaagggatgcaccgataccatttttttggATCCGATCTtgataccaaaattctgagtatcgaccaATACAGATccgatacagtttttttttttttttttttaagcattatacagtttctatagttctggtgataaactcaaaaaatatatgctatttagaataaataacagacctatagacctactgtatatgacagacaGCACAATCTAACTTAAAACATGATGCTCgctgtaaactaggctacattattcgAGCATTCATTAcgacattgatctgttgtggcacagcttatgtttccttttttaatattaagatttatcTTTGAAATTGCACAATTGCATTTTAGTaataggctaccactattgaccctaattag

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194006

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00073533 lncRNA upstream 30562 41474942 ~ 41479386 (+) True XLOC_037368
TCONS_00075179 lncRNA upstream 263440 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00073528 lncRNA upstream 263440 41240768 ~ 41246508 (+) True XLOC_037366
TCONS_00073527 lncRNA upstream 269076 41238241 ~ 41240872 (+) False XLOC_037366
TCONS_00073517 lncRNA upstream 426767 41080094 ~ 41083181 (+) True XLOC_037363
TCONS_00073541 lncRNA downstream 189390 41788217 ~ 41806355 (+) True XLOC_037375
TCONS_00075180 lncRNA downstream 503374 42102201 ~ 42108086 (+) True XLOC_037379
TCONS_00074932 lncRNA downstream 559549 42158376 ~ 42158616 (+) True XLOC_037381
TCONS_00075181 lncRNA downstream 750131 42348958 ~ 42500284 (+) False XLOC_037383
TCONS_00075182 lncRNA downstream 859272 42458099 ~ 42500284 (+) False XLOC_037383
TCONS_00073532 mRNA upstream 28298 41474623 ~ 41481650 (+) False XLOC_037368
TCONS_00073531 mRNA upstream 30426 41459772 ~ 41479522 (+) False XLOC_037368
TCONS_00073530 mRNA upstream 39540 41459759 ~ 41470408 (+) False XLOC_037368
TCONS_00073525 mRNA upstream 262759 41218974 ~ 41247189 (+) False XLOC_037366
TCONS_00073537 mRNA downstream 13815 41612642 ~ 41681053 (+) True XLOC_037371
TCONS_00073539 mRNA downstream 91326 41690153 ~ 41741420 (+) True XLOC_037373
TCONS_00073542 mRNA downstream 222786 41821613 ~ 41979505 (+) False XLOC_037376
TCONS_00073544 mRNA downstream 315551 41914378 ~ 41979505 (+) False XLOC_037376
TCONS_00073543 mRNA downstream 315551 41914378 ~ 41979505 (+) True XLOC_037376
TCONS_00073529 other upstream 243105 41249457 ~ 41266843 (+) True XLOC_037367
TCONS_00073510 other upstream 612765 40895771 ~ 40897183 (+) True XLOC_037359
TCONS_00073509 other upstream 613136 40895649 ~ 40896812 (+) False XLOC_037359
TCONS_00073505 other upstream 1231685 40278147 ~ 40278263 (+) True XLOC_037355
TCONS_00073504 other upstream 1372336 40137497 ~ 40137612 (+) True XLOC_037354
TCONS_00073538 other downstream 84099 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073540 other downstream 134706 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073545 other downstream 391259 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073546 other downstream 441730 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073552 other downstream 500910 42099737 ~ 42125384 (+) True XLOC_037378

Expression Profile


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