RNA id: XM_039794836.1


Basic Information

Item Value
RNA id XM_039794836.1
length 3654
RNA type mRNA
GC content 0.51
exon number 29
gene id LOC120555780
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 20504098 ~ 20692974 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGATAACGTTAGTTTTAGTTCGCAGCGGTTTGAATCCACTAGCAGTAAATCTCAAAAGAGGAAGGGTTCTTCCAACCAAAACACATGTAATGATGAAGGAGACCGCAAACCAAAGTTTCACTTACCCTTTAGAAACATCACAGATGATGTGCTGGACAGATTCGCCAGTATTCGGATTCCGGGTAGTAAAAAGGAGCGGCCACCCCTATCACACTCTAAACACAACACGAATGATTGGTCCATTTCTTCATCATCTACCGCGCATCAGTTTGAGGAACTTTCATCCAAGATCACCTCAGAAAAAGAGATCTTGGCTCTGTTTGAAAAGATGATGgaGGACATGAACttgaatgaggaaaaaaagactCCTTTGAGAGAAAAGGACCTcaacacaaagagagaaatgGTCATCCAGTATGTTTTTACTGCCTCTAAAACTgGTAGTTTGAGAAGCAGCCATCAGATATCTCCCCAGGAATTCCTGGGAGAGCTGAAGTCGGGGGTTATGGACGAACGTCTGTTTGCCTGTCTAGACTCATTGCGGGTGTCCCTTACCAGCAACCCTGTCAGttGGGTGCAGAGCTTCGGCCATGAGGGTCTTGGACTGCTGCTGGACATTTTGGAAAGGTTGCTGTTCAAGAAACAGCAAGATAAGCTTGACAAAAAGAATCAACATAAAGTTGTCCAGTGTCTCAAAGCCTTCATGAACAATAAGTATGGGTTGGATCGAATCCTGGGAGAGGAGAAAAGTCTTGCGTTACTGGCAAGAGCCATTGATCCCACCCAGTCTGCAATGATGACTGACGTGGTAAAGCTACTGTCAGCCATCTGCATCGTGGGCGAAGAGAACACTTTGGAAAAGGTCCTTGAAGCCATCACCACAGCAGGGGAATGGCGAGCCATCGAGAGGTTCAGTCCCATTGTGCAGGGACTACGAGATCGCTCGGTTCAATTACAAGTGGCATGCATGCAGCTCATCAATGCACTAGTAACATCCCCTGATGAGCTGGACTTCAGGCTGCACATCAGAAATGAATTCATGCGCTGTGGCCTGAAAGAAATATTGCCGCATCTGACAACCATCAGGAATGAGGCCCTTGACATTCAGCTAAAGGTATTTGAGGAGCACAAAGAAGAGGACATGATAGAGTTCTCTCACAGGCTGGAAGACATCAAAAGCGAACTGGATGATGTGGGGGACGTGTTCAGTATTGTACAGAGCATGGTGAAGGACAGCAGTGCAGAGCCCTATTTCCTGTCTATACTGCAGCACCTGATGCTTATACGCAACGACTACTTGGTCAGGCCCCAGTACTTTAAGATCATTGAGGAGTGTGTGTCTCAAATTGTGCTCCACCGTAGCGGCACTGACCCAGACTTCAGTTACCGCAAGCGCCTAGATGTGGACTTCAGCCACCTCTTAGaggTGTGTGTAGATAAAGCTCGAACTGACGAGTATGAACAGAGAGCTTCAGACCTGGCAGAGAAGTTTGACGAGGAGTTTCTAAGCAGACAGGAGGCACAAGCTCAGCTGGTTAAGTGTGATGAAAAAATAGCTGAACTCCAAGCAGAGCTGCAGGCCTTCAGGTCCCAGTTTGGAGCTGTACCTGTGGGTCTGTCCTCTGCCCATGTTGGACAGGCGTCCTCTTCCTCACCATTCTCATCTGGGCCTCCACCCCCTGCTGCAGCAGCTGGGATGCCAGCTCCCCCTCCTCCGCCTCCTTTGCCTGGTTGTCATGCCCCACCTCCCCCGCCTGGAGTGCCTCCTCCATTTGGtgccccccctccaccccctctAGGGTTTGGGGGTGGTCTAGGCTCCCCCACCCACCATGCATTGCCTTTTGGCCTCAGGCCTAAGAAGGATTTCAAGCCTGAGACCTCCATGAAACGCCTCAACTGGTCCAAGATTCGTCCCCAGGAAATGTCAGATGGCTGTTTCTGGGTGCGGGCTGATGAGAACCAATATGCGAAACCAGAGTTACTGTGCAGAGTTGCTCTCACTTTTTGTTCACAAAGAACAGAAACCAAGGCcaaaaaagaagaggaggatcTGGAGGATAAAAAATCCATAAAGAAAAGAATTAAAGAGCTCAAGGTGCTAGATCCTAAGATTGCACAGAATCTATCCATCTTCCTGGGTTCCTTCCGTATGCCTTACCAGGAAATCCGTCGGATGATAGTGGAGGTGGATGAGGAGCAACTCACTGAACCGATGATCCAGaACCTTGTGAAGCACCTACCAGAGCAGGAGCAGCTGAACGCCTTGGCCAAGTATAAAAATGAGTACGCAAATTTGTCGGAGCCTGAGCAATTTGGGGTTGTGATGAGCAGTGTGAAGAGGCTGCGTCCTCGCCTGAGCCACATCCTCTTCCGGCTGCAGTTTGAGGAGCAGGTAAACAACCTGCGTCCAGATATCCTGGCTGTTAACGCTGCGTGTGAGGAGGTCAGGAAGAGCCACTCCTTTGGCCGCTTGCTGGagctggtgctgctgctggggaATTACATGAACGCAGGATCTCGAAACGCCCAGTCATATGGCTTCGACCTCAGTTCCCTCTGCAAGCTGAAGGACACTAAGTCAGCGGACCAAAAAACCACATTACTTCACTTCCTGGTGCAAGTATGTGAGGAGGAATTTCCAGATGTGATCAAGTTTGTTGAAGACCTGGAGCATGTGGACCGATCTAGCAGAgtgtctgcAGAGAATCTGGAAAAGAGCCTCAGGCAGATGGAGatgcagctgctgcagctggagAGAGACCTGGAGACTTTCTCCTCCCCCGATGACCCCAACGACATGTTCCTCACTAAAATGGCTAGCTTCAGCAAGGTTGCCAGGGAGCAGTATGGCAAGCTGGTGATAATGCACCGCAATATGGAGACGCTATATCAAAATATGCTGGAGTACTTTGCCATCGACCCCAAGAAGACCTCTGTGGAGGAACTGTTTACAGATCTCAGCAACTTCCGTGCCATGTTCACTCAAGCACTGAAGGAAAACCTGAAGCAGAGGGAGTCAGAGGAGAAACAGAGGAGGGCACTGGCGGCAAAGGAGAAGGCTGAGCGTGAAAAGCAGGAGAGACAACAGAAGAAGAGGAGGTTGCTGGAAGTCAATGCAGAGAATGATGAGACAGGTGTGATGGATAGTTTGCTGGAAGCCCTACAGTCAGGAGCTGCTTTTAGAGACCGCAGGAGGAGAGCACCAAGACCCAGAGAGAACCAGCAGCAGGTGATCAGCCCCAGCTCCTTCCGCCAGGTTCTCAGGCCTGTTAACCATGaaaacaacaaGGCACCTTTGCAAAGGTCTCGCTCTCGGCAGAATATAAATTTAGGTTCAGCGGTGGTGAAAGCTCCCCCTGCCAAGGAGGCCCATAACGAGTCTGAGGGCCATCCATCTGCAGCCCGCACCAAGACTGCTGCATGTTCGGAGTCAGGCCGCAGGTACAGGAACACCCCGAGTCACAGCCACTGGCTGGACAGAGAGAGggtggtggagagagagactgtTAAGCTGACGGAAAATAAGATGGAGGTTGAAGCAGAGCCTCCGGCCTTCCAGCCGTCCTCCACTGCTGCTGCGGTCAGCAGCTGTGGCAGCAATGGAGAGTCCGACTTAGAGGCTCTCCTGGCCAAACTCAGGGCCTTGTGA

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38170 lncRNA upstream 148278 20356072 ~ 20356354 (+) True G28721
TU38142 lncRNA upstream 390272 20113987 ~ 20114360 (+) True G28696
TU38103 lncRNA upstream 510701 19993206 ~ 19993931 (+) False LOC120555792
XR_005638757.1 lncRNA upstream 532392 19971219 ~ 19972240 (+) True LOC120555794
TU38241 lncRNA downstream 86733 20777543 ~ 20777816 (+) True G28776
TU38242 lncRNA downstream 106602 20797412 ~ 20797671 (+) True G28777
TU38243 lncRNA downstream 135414 20826224 ~ 20826477 (+) True G28778
TU38260 lncRNA downstream 382731 21073541 ~ 21073755 (+) True G28792
XR_005638733.1 lncRNA downstream 451915 21142725 ~ 21143190 (+) True LOC120555568
XM_039794105.1 mRNA upstream 57859 20442399 ~ 20446773 (+) True LOC120555422
XM_039794869.1 mRNA upstream 510678 19772119 ~ 19993954 (+) False LOC120555792
XM_039796125.1 mRNA downstream 596033 21286843 ~ 21287974 (+) True LOC120556481
XM_039795974.1 mRNA downstream 640343 21331153 ~ 21352064 (+) True nkpd1
XM_039795976.1 mRNA downstream 640343 21331153 ~ 21352064 (+) False nkpd1
XM_039795975.1 mRNA downstream 641083 21331893 ~ 21352064 (+) False nkpd1
XM_039795984.1 mRNA downstream 681347 21372157 ~ 21374142 (+) True trmt10c
XR_005638835.1 other upstream 984414 19512356 ~ 19520218 (+) False ercc3
XR_005638872.1 other upstream 1006408 19498093 ~ 19498224 (+) True LOC120556586
XR_005638873.1 other upstream 1006759 19497738 ~ 19497873 (+) True LOC120556587
TU38013 other upstream 1017099 19487246 ~ 19487533 (+) True G28581
TU37478 other upstream 1936152 18561895 ~ 18568480 (+) False LOC120556478
TU38234 other downstream 20294 20711104 ~ 20761147 (+) True G28770
TU38307 other downstream 705403 21396213 ~ 21403450 (+) True G28826
unassigned_transcript_140 other downstream 1856391 22547201 ~ 22547272 (+) True trnag-ucc_7
TU38801 other downstream 2073909 22764719 ~ 22881652 (+) False ankrd11
TU38802 other downstream 2176910 22867720 ~ 22881366 (+) False ankrd11

Expression Profile