RNA id: XM_039794844.1


Basic Information

Item Value
RNA id XM_039794844.1
length 4643
RNA type mRNA
GC content 0.52
exon number 25
gene id ttc17
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 14017552 ~ 14048294 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGCGCCGCCGGCAGGCCGGAGGTTGCCCTGCTACAGAGCAAAATGAGACAGAAAAATGGCGGACGTCAGGAAAATCTGTCCCGAGTATTTGCCCTGTCGTGTCAACTATTCGCGGAAAACCACATTTCAGGGGAAGCTTTTCGTCCTTCTTTGCATCCTTATAGTGGACTCCGGAGGAGCTACGACCCATTGGGTTGTCACGGAGGATGGGAAAATTCAACAACAAGTTGACTCACCTTTGAATCTAAAGCATCCTCACGACGTTGTGATCTTCATGAGGCAAGAGACTCGTGTTAACTACCTCAAGAAGCTGGAGAAGCAGCTTGTGGCACAGAAGATTCACATTGAGGAGAACgaggacagagacacagggcTGGAACAGAGACACTACAAAGAGGATGCGGACTGCGTCATGGCTAAGGTACCCCTGGGAGACCTGGATCTGTATGATGGTACTTATATTTCCCTGGAAAGCAAAGACATCAGCCCAGAAGAATATGTGGATTCCCGGTCAGCTCTGCCCCCAGATCTAGAGAAGCCTGACTGTGCCATAGTGTTTGAACTACCTTATAGTATCCATGCTTTTCAACATCTCAGGGGTGTGCAGGAGAGGGCAAACTTGACCTCCCCTCTGCTTTCTAAGGAAGATCCCATTTTTAGTTCATTGTCTCATAAGCTGGGCCGCAGTGTTGATGAGTTGGGCCATCGCATCCATCAAGGGTTACTGAGGAACTCATCGTCCTGGGTGCTGTACAACATGGCATCATTTTACTGGCGTATGAAGAACGAGCCTCAGAGAGCAGTGGACTGTGTAGTGCGTGCTCTGCATTTCTCCCCAAGGCAGCACAAGGATGTAGCCCTGGTCAACATGGCCAACATCCTGCACCGTGCCCATTTCTCAGCCGATGCCGCTATTCTCGCCCACGCTGCCCTGGACCTAACATCCGATCTGTTCACCAGCCACTACACCTTAGGAAACATTTATGCTATGCTTGGGGAATACAACCACTCCGTGCTGTGTTACGAGCAGGCACTGCAGGCCCAGCCAGGCTTTGAACAGGCCCTGAGGAGGAAACATGCCGTGCTCTGTCAGCAAAAGCTGGAGCAGCGCCTGGAAGCCCAGCACAGATCCCTGCAGCGGACACTGAATGAACTGAAGGAGTACCAGAAGCAGCATGACCACTACCTTCGCCAGCAGGAGGCACTGGACAAACACAAGCTGCTGCAGGAAGAGCAGATCCTGCGCAACATTATCCATGAGACCCAGATGGCTAAGGAAGCCCAACTTGGGAACCATCAGATGTGTCGGCTGGGTCAGCAGCAGCGCAGCCTCTACTGCCCCTTCGACCTGCCTGTGCGCTATCACCGCGGTGATGTGTTTGAGCATGTCCATTATGTCCAATTTGGGGAGGAGGTGTCAGTGGCATCCAGTGTGGCACTTGTGTCCGAGCGCAACTCAAACCAGACGGCAGCCAGCCCCCAGCTTCATCCCTCTGTGTCCGGAGACCATGACCCTGCTGCTGCCCTCTGGAGCAGCCATCAGGATTACACACAGGACATACAGAAGATGTTGTGGCCTCAGAGGACCAACTGTGTCCACGAGTACCCAAGTGTTCCCCCTGCTCACCTGCTGCCTACCTACTACCTTCCACCTGAAACTCAGGGCCTCAGCCCAGTGGCAACTCTGCTCTATGGGAGCAGCAGTCCTCCTCTGACAGTAGCTCTGCCAAACTGTGGTCCCGTCCCCCAACCATATCCAGCCCTCCTGCCTGCCTCGCTAGACTGGCCTCTGGAAGAAAAGATGCTGCCAGATCCCTCTGCCTCccagATACTGCAGTTACGTAGTGGAGGATGGACGCTGGAGCAGATTGGCTCCAGAATAGCTCAAGCTATGAAACAAgcCACTGTACCCCGCTGGCAGGTCCAGAATGAGGCAGCTCTATTCTGGCGGGCCAAAGGCAATGGCAGCCGTGCCCTGCAGTGCCTGCGCCAAGTTTTGAGCTCAGCCCCGCCTTCCCACCGCCACTTGTCCCTCACCAACGCTGCTAACCTGCTGCTACATCACGGCTTGACCACCCACGCACAAACACTGCTGGAGCAAGCACTGGCTCTCAATGCATCAGAGCCCCACACCCTGCTCAGCCTGGTGAGCGTGCAGCTGGCCCAGGGCAACGTGACGGGTGCTCTGGCGTTGTTCCGCCACATCCTGGCGACggccctttcctcctcctcttccttctcatCCTTTGCTGGCTGCGAACAGTGTCGCACCAGCCTACCTCTGCTGCGTTGTCTGCAGTTCTACCCCTTCCTTTACAATCTCTCCCACCGGCAGCCCTGCCCACAGGGTGCTGCCTGCGTGGCTGAGAAGGACCTTGGTATACAGCTGGAGGAATGGGAGGGCATCGAAGAGAATCAGGATGTGCCAGCCATTTCTGCCATGGAGGACTCCTTGCTCTTTGAGAAGGTTATCTTGGACAGCAATGGGTCAGGGGAGGCAGCTGGACAGCAGCGGGCCTCTCCCTCTGCCTCAGGAACAGCTAAGATGGCCACCCCctttggtggtggtggaggagtgGAAGGGGAAGAGGAGTGGCAGCTGAAAGAGGACCTGATGGGAGCCTTCGAGGGAGCACTGGATGTTGGAGGCAAACGAGGGGACCTGCGAGGTATCCGGGTGCTGAAGAATGACCGTGTCATGGGTGCCCGTGCCGGTGGTGGGCCCTGCTTCGGAAACTGTGAGGATGACGAGGGAGCTGAGTGGATCACCTTCCAGGTGAAGCGGGTCAGGAAGGCTAAGGTGGATGGCATAGAGAGTGTTGCCAGCGCTGATGATGGCCAGAATGGGGAGTCCCTGCCTGGAGGACACTCTGTCTTGGAGATAAGTGGGCCAACTATCCCATCGCCTGGCCCTTCAGGCCGCTGGAGGGACTACACAAGTCTTGGCTGGCCAGGGCCTGAGGAGTGCCAGCGGACACGAAGGGTAGACCTTACCACTGTAGCTAGCACCTGGTTGGCTGTTTCTGCCAAGAACATTGACATTACAGAGCACATAGACTTTGCCACTCCACTGCAGGAGCCAGCTGCTGAACCTTTATGCAACGCCAACCTAGCTGCCAGTATGCACACACTCGACCACCTGGCGGGGGTGGCCAATCGTGCCGCCATCCACTACACCGGAGAGAGCCAACTGCGCGAGGTCCTGCAGAATCTCGGTAAAGATAAGTTCTCCCCTCAGTCCTTTGAGCAGGTGGGAACGCGCATCGCTAAAGTACTGGAGAAGAATCAGACATCGTGGGTATTATCCAGCATGGCCGCTCTGtactggagggtgaaaggtcAAGGCAAGAGAGCCATCGACTGCCTGCGACAGGCCCTCAACTACGCCCCCCATCACATGAAGGACGTGCCCCTCATCAGCCTGGCCAACATCTTCCAGAACGCTCGGCTATGGGAGGACGCTCTCACGGTCGCCCGTATGGCAGTAGAAATCGCCCCGCACTTTGTCGTCAACCACTTTACCCTCGCCAACGTCTATATAGCGATGGAGGAGTTTGAGAAAGCCATGCGCTGGTACGAGTCTACGTTGAAGCTGCAGCCAGAGTTCGCCCCTGCCAAAGATCGGCTGAGAACCATCCAGTGTTACCTGCTCACCAAGAGGGAACGCCGTCAGCCCTAAACCGCTCCACCAGTTTGATCACAAGGAGTAACCCACAATCATGCACACACTAGataaccaacacacacacacacacacacacacactcactcatctgAAGACCACCGATAAGAAGCACAAAATGAAAGTGTAAGAAACGTTTTATGTGGTTAAAGGTGAGGTGTCAAGATCCATATCCAGTAGAATCTGGGCTCTAACTCCCCCGAAGAATTAGGTTCGAAACGTCACAGAAGTACAACTGTAGATAATTCTGCCCCCCCGCCACTACTTACAGTATGTCAAATGCAGGACCTCTTGTTATCAAACAATCAAGACGTTGGGATTGTCAGACTCGGTTTTTTTCTAGGTTTGCTTGACTTGCAAAAATGGAATTGAACAAGATTTGAAAATCCCAGTGAATTCTTCAGCGACATTTTGATTTCAACCGCTGCTAATTGGAAGAAAACTCACATTGTCATTCGTTAAGACATTTTAGCATTTTGGTATGAGGAGGAGGCATCTAGGAGGTTCTCCAGGATAATAACATACTACAGCCTGGAGATGGCGCCATGTTTTAATGTAACCTGATtggacattttaaaagaaaaggatGTTATACAGTCTTATGCTGAGATGGTAAGGAATGTGCCTCGCAACTCCGAGGTTAAAGGAGTTTGAATTGAACGTTATATGCCCTCAATATTTCTGCTTCATAAAATGGATGGGAATTCTCAGtttttgcactttttatttttctttatcatTCCTATTTCTATGGGACCTACAAACTTTGATTTTGCTCCAAGgtaatttaaatacaaaagagAGAAACTGAAATACGCTATAACATTTGCTTCTTAACTTATGGAAATCATAAGGCAGAAAAAGGATTTGCCATTGACCatctataataaaaaaaaaaaaaagtggaatcTGTATTTAATGTACAGTATTAAAGGCAGTGTGTGGATTTCATTAGTTAA

Function

GO: NA

KEGG:

id description
K24931 TTC17; tetratricopeptide repeat protein 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36332 lncRNA downstream 12941 13997113 ~ 14004611 (-) True G27277
TU36334 lncRNA downstream 14805 14001850 ~ 14002747 (-) True G27279
TU36279 lncRNA downstream 263478 13753706 ~ 13754074 (-) True G27230
TU36260 lncRNA downstream 296956 13719198 ~ 13720596 (-) True G27211
TU36258 lncRNA downstream 305284 13708919 ~ 13712268 (-) True G27210
TU36357 lncRNA upstream 119264 14167557 ~ 14167758 (-) True G27295
TU36359 lncRNA upstream 121320 14169613 ~ 14169839 (-) True G27297
TU36363 lncRNA upstream 131834 14180127 ~ 14180348 (-) True G27301
TU36375 lncRNA upstream 176043 14224336 ~ 14225278 (-) True G27309
TU36389 lncRNA upstream 479549 14527842 ~ 14528127 (-) True G27322
XM_039795130.1 mRNA downstream 22237 13967714 ~ 13995315 (-) True hsd17b12b
XM_039795129.1 mRNA downstream 22239 13967714 ~ 13995313 (-) False hsd17b12b
XM_039794263.1 mRNA downstream 290082 13723593 ~ 13727470 (-) True LOC120555520
XM_039796044.1 mRNA downstream 610937 13402324 ~ 13406615 (-) True chst1
XM_039794264.1 mRNA downstream 723291 13285241 ~ 13294261 (-) True LOC120555522
XM_039794175.1 mRNA upstream 13743 14062036 ~ 14090460 (-) True trpm5
XM_039794096.1 mRNA upstream 52836 14101129 ~ 14153448 (-) False kcnq1.1
XM_039794095.1 mRNA upstream 52836 14101129 ~ 14153448 (-) False kcnq1.1
XM_039794094.1 mRNA upstream 52836 14101129 ~ 14153448 (-) True kcnq1.1
XM_039794112.1 mRNA upstream 177484 14225777 ~ 14250332 (-) True lingo1b
XR_005638877.1 other downstream 728288 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 921786 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 1712728 12304539 ~ 12304824 (-) True G26924
TU35894 other downstream 2055780 11960701 ~ 11961772 (-) True G26891
TU35842 other downstream 2348283 11643571 ~ 11669269 (-) False LOC120555651
TU36388 other upstream 421465 14469758 ~ 14470345 (-) True G27321
TU36517 other upstream 794420 14842713 ~ 14843905 (-) True G27420
XR_005638870.1 other upstream 1591476 15639769 ~ 15639960 (-) True LOC120556584
TU37150 other upstream 3459830 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 3461657 17509950 ~ 17513168 (-) False G27925

Expression Profile