Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039794848.1 |
| length | 2038 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 8 |
| gene id | traf6 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_053114.1 |
| NCBI id | CM020911.1 |
| chromosome length | 46923577 |
| location | 14048291 ~ 14055494 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0048468 | cell development | biological_process |
| GO:0070498 | interleukin-1-mediated signaling pathway | biological_process |
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0046849 | bone remodeling | biological_process |
| GO:0007250 | activation of NF-kappaB-inducing kinase activity | biological_process |
| GO:0001503 | ossification | biological_process |
| GO:0009615 | response to virus | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0031666 | positive regulation of lipopolysaccharide-mediated signaling pathway | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0045672 | positive regulation of osteoclast differentiation | biological_process |
| GO:0043507 | positive regulation of JUN kinase activity | biological_process |
| GO:0050852 | T cell receptor signaling pathway | biological_process |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0004871 | obsolete signal transducer activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU36310 | lncRNA | upstream | 46723 | 13997113 ~ 14001647 (+) | True | LOC120555409 |
| XR_005638709.1 | lncRNA | upstream | 46936 | 13999535 ~ 14001434 (+) | False | LOC120555409 |
| TU36293 | lncRNA | upstream | 111642 | 13928199 ~ 13936728 (+) | True | G27241 |
| TU36294 | lncRNA | upstream | 111642 | 13928199 ~ 13936728 (+) | False | G27241 |
| TU36287 | lncRNA | upstream | 193939 | 13852067 ~ 13854431 (+) | False | lrrc4cb |
| TU36368 | lncRNA | downstream | 167815 | 14223309 ~ 14224234 (+) | True | G27306 |
| TU36387 | lncRNA | downstream | 410984 | 14466478 ~ 14466680 (+) | True | G27320 |
| XR_005638843.1 | lncRNA | downstream | 518703 | 14574197 ~ 14577703 (+) | True | LOC120556358 |
| TU36395 | lncRNA | downstream | 520949 | 14576443 ~ 14577250 (+) | False | LOC120556358 |
| TU36427 | lncRNA | downstream | 628339 | 14683833 ~ 14684116 (+) | True | G27356 |
| XM_039796070.1 | mRNA | upstream | 191947 | 13809935 ~ 13856423 (+) | True | lrrc4cb |
| XM_039796071.1 | mRNA | upstream | 191947 | 13848060 ~ 13856423 (+) | False | lrrc4cb |
| XM_039795716.1 | mRNA | upstream | 282743 | 13750416 ~ 13765627 (+) | True | LOC120556255 |
| XM_039795794.1 | mRNA | upstream | 325305 | 13708869 ~ 13723065 (+) | True | slc1a2a |
| XM_039795637.1 | mRNA | downstream | 37370 | 14092864 ~ 14094321 (+) | True | cdkn1ca |
| XM_039795756.1 | mRNA | downstream | 227665 | 14283159 ~ 14463293 (+) | True | luzp2 |
| XM_039795301.1 | mRNA | downstream | 647485 | 14702979 ~ 14706234 (+) | True | fibinb |
| XM_039795300.1 | mRNA | downstream | 653068 | 14708562 ~ 14734747 (+) | True | bbox1 |
| XM_039794712.1 | mRNA | downstream | 796791 | 14852285 ~ 14860024 (+) | True | LOC120555721 |
| TU36145 | other | upstream | 810551 | 13235235 ~ 13237819 (+) | True | LOC120556202 |
| TU36106 | other | upstream | 938031 | 13109757 ~ 13110339 (+) | True | G27086 |
| XR_005638880.1 | other | upstream | 2016642 | 12031621 ~ 12031728 (+) | True | LOC120556595 |
| TU35313 | other | upstream | 4188370 | 9847277 ~ 9860000 (+) | True | aldh1a3 |
| TU35242 | other | upstream | 4443934 | 9566831 ~ 9604436 (+) | False | adamts17 |
| TU36647 | other | downstream | 1385983 | 15441477 ~ 15446392 (+) | False | LOC120556433 |
| TU36678 | other | downstream | 1419670 | 15475164 ~ 15486421 (+) | False | LOC120556001 |
| XR_005638756.1 | other | downstream | 3669054 | 17724548 ~ 17742734 (+) | True | LOC120555788 |
| TU37478 | other | downstream | 4506401 | 18561895 ~ 18568480 (+) | False | LOC120556478 |
| TU38013 | other | downstream | 5431752 | 19487246 ~ 19487533 (+) | True | G28581 |
