RNA id: XM_039794850.1


Basic Information

Item Value
RNA id XM_039794850.1
length 4344
RNA type mRNA
GC content 0.54
exon number 20
gene id secisbp2l
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17702303 ~ 17720257 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCATCGCCCAAGCTACAAGCTAGTCTGGAGAGCGCAGCCGCAGCCAGCTGACGCAGCAACAGTCGGCGGTCAGTGGGACCTGGGTGTGAGTCTAATAAGCCTTCagtgattattattatcatttataATGAAGAAATTAAGAAGACCCACATCCTGACGTCAACATTTTGGTCAATGACTGACTGTCGCGGTGACGGTTCCTGACATGGACGCTAGTGACAATAAGGATGTGAAACTTTCAGCCGAAGTGGAACCGTTCATCCCACAGAAGAAAGGTCTCGAAGGATCCCTAGTCAGTATGAGTCTTTCTGGAGAGGCaggcggaggaggaggggggggaggcaTAGGAGGGGGCGGTGGAGGGGTGGAAACCACTCCCATACCCAGCTACCTCATCACCTGCTACCCTTTCGTCCAGGAGAACCAACCCAACAGGCAACATCCTATGTATAATGGAGGGGAGCTGCGCTGGCAGCAGCCTAACCCCAGCCCTGGTGGTTCATACCTGGCCTACCCCATCTTGTCTACGCCCCAGCCTCCTGTCTCCAACGACTACGCTTACTACCAGATTATGCCCACTCCATGCCCACCTGTGATGGGCTTCTACCAGCCCTTCCCTGGCACCTATGCAGGTCCTGTGCAAGCTGGAGTGGTCAACCCTGTCTCAGCAGATGTCAGTGAAAGACCACTGCCTCTGGGGCCAGCATATGGGATGGCTAGTCAAAGGGGGAGAGGCATGGTCCGACCTAATGTTCTCTCAAAGCAACAGTTAGGTGTGTGCCAGCCTCCGAGGGGTCGCCGGCCTCCAACCAGAAGTGTAGCTGTGCAGAAAGAGGTTTGCACCTTGGGGCCTGATGGTAGGACCAAGACAGTCATGCTGGTGGATGCAGCACAGCAGACCGATTTCCCAGGTGAGGTGTCAGGGCGGTGTGCTGCTGAGCGGGCTAGTCCCCTGCTGTGGAAGAACCGGACAAAGAGAAGACGGGCGTCCCATCCAGCTGAAGGCTACAACGAGCAGGGTGCCAGTGAGGCAGATATAGACAGCGACAGTGGCTACTGTAGCCCCAAACACAACCAGGCGGCAGGGGTAGCAGCAAATACAGCAGCACCCACAGGAGTAGAGGCTGGTGTAATGACAGCAAGTACCTGGGTAAATGTAGCCTCTCAGGCTACCCAGAAGTCCTGGGGAGACAGGAACAGCCAGTTCCACAGAGCAGACCAGAGGAAGAATCCTGAACAGAGGAACTTCTCACAGAGCCTGCATGTGTATACTGGTGTTGTGGATGGAACAAAAAATGCACTGAGACAACAAATAAGGAGTATTTTAGCATCAACTGAAGACAGGGGTATCAACAGAATGAATAGCCAGaaatcgagcctcatcagaccaggcaacatttttacagtcttcaactgtccaattttgGATTTCCACAGTGGCTATCCAGGGCGTGTGCCGCCGAACCAATcggagcagaggctgcagccagcAGGGGTCACTAGTACTGAGCTCACCCCAGAGCCCCTCTACTTTGAGGATGAAGACGAGTTCCCAGATCTCACTACTGGAGGGGCTGTCCAACGCAGCACCAAACCAGAATCTACTTCAGCCCAGACACACGCGCAACCTAAACTGCCCAAAAACCTGCTGGATAACCTGCCAGAAAACTCCCCTATCAACATTGTGCAGACACCCATCCCCATTACCACCTCGGTTCCCAAGAGGGCCAAGAGCCAGAGGAAGAAGGCTCTGGCTGCTGCCTTGGCCACTGCACAGGAGTACTCGGAGATCAGCATGGAGCAGAAGAAATTACAGGAGGCATTCACCAAAGCAGCAGGGAAGAAGAGTAAAACCTCTGTCGAGTTGGACCTGGGAGACATGCTGGCAGCTTTGGAGAAACACCAGCAGGCTATGAAGGCCAGACAACTCACCAATACCAAGCCACTGTCTTTTACAGTTGGAacaactactccattccatgGTTCAGGCTTGACCAGCATGCCATCCATGATGAAGGGTCATCAGCAGCCATACTCGGCCCCACACAATGCCCTGGATTCCACCGCCCCCCGTAtcaagagagggaaggagagggagatcCCTAAAGTAAAACGGCCGACAGCCCTTAAGAAGATTATCTTGAAGGAACGTGAAGGGAAGAAAGGGAAGACGAGTGTAGAACAAGAGTCTTCAGGCCAGGAGGAGCATGGGGATGAGTCTCTACATTTCACTGATGATCTTGCACGAGAGCCTGCCTCCCAAGAAAGTGAGGACAATGGTCTGAGTATGCCCAGTGATGCATCCCTTTCCCCGGCCAGTCAGAACTCTCCATATAGCATCACCCCAGTGTCCCAGGGTTCTCCTGCCAGCTCTGGCATCGGGAGTCCTATGGCCTCAAATGCCATCACCAAGATCCACAGCCGACGTTTCAGAGAGTACTGTAACCAAGTGCTGAGTAAGGAGATAGATGAGAGCGTGACGATGCTGTTACAGGAACTGGTTCGCTTCCAGGAGCGGGTCTACCAGAAGGATCCTACCAAGGCCAAATCCAAACGCCGCCTGGTCATGGGTCTCAGAGAGGTCACCAAGCACATGAAGTTGCATAAGATTAAGTGTGTCATCATCTCTCCCAACTGTGAAAAGATCCAGGCGAAAGGTGGATTGGATGAAGCTCTATACAATGTAATTGCCATGGCTAGGGATCAGGAGATCCCGTTTGTGTTTGCCTTGGGCAGAAAAGCTCTTGGACGCTGCGTCAACAAACTAGTGCCTGTTAGCGTGGTTGGCATTTTCAACTATTCTGGAGCTGAGGGTCTCTTCAACCGTTTGGTGTCTCTGACAGAAGAGGCTAGGAAGGCCTACAAGGACATGGTGTCAGCTCTGGAGCAGGAGCAGGCCGAGGAGGCTCTGAAAAATGACAAGAAAGTCCCACACCACATGGGGCATTCCCGCAACCACTCTGCTGCTTCTGCTATTTCCTTTTGCTCCATCTTCTCTGAGCCTATCTCAGAGGTCAATGAAAAGGAATACGAGACCAACTGGAGGAGTATGGTGGAGACTTCAGATGCCCTGGAGCCTGTAGAGGCTGAGCCGAGTCGCCCTGCACCTGCCACAGCCGCCCAGAAAGACGGTGAGACCCTGGCGGCCAACGCCGCGCCGCCCGGCTCCACTGCTGCCCAGCCCAGGGCAGTGCCTCCGACACTGACGCAGGGTACCAGTGAGAGAGACGAGGTCCGGGTTGACGACAGGCTGGAGCTGGCCTCTCAGCAGAGCACAGAGACGGGCTCGTTGGATGGGAGCTGCAGGGGCCCGCTGAACTCCTCCATCACCTCCACCACTTCCACCCTGGTGCCCGGCATGTTGGAAGAggcagaagaggaggaggaggaggaggaggactaCACCCCTGAGCCCATTTCTGTGGAGGTCCCCACCCTCAGCAGCCGCATCGAATCCTGGGTGTCAAAGACCCTGGAAAACCTGCAGCTGGGGAAGAGCCAGGAAAGTacggaggaggaagaggaggaggaggaagacgatgaagaggagagagggcagagtgaagaggaggaggacctCGATTCCGCGGACATCACCGAGACGAGGACGGAGGGTAATGAGCAAGAGGAGGCAAAGAAGGTCACTGGTTGATGtcacctctcctcctcatccctccGTTCTTTCATCCACTCattccctctgtcctctgttgCTCTCACATCCCTCTTCACAGCAACCAGCAGCTCTTCGTCTTCGTCTCTAACCCCTGACACCAGACATAATCTCAGGTATCCAACCAACTGACCAACACTCACACGCATTACAGAGAAACTGACCAACTTACCAACACACAGCGTCGCAGACCCAACCCCAACTAACACGGTCGACCCCTGTCCAGACCGGACGTTAGCGTACGTCTTGCGTCttccgatcacaagtggacagctctaagtacagGTGTAAACGCACCCAAGATGCATTGAGGTATGAGTATTTCTCATGTCAAAGAACCACGGAGAAATCACGGTAAATGTTGTGTCTTGGCtgtcagggttagggttagattaTCCCGCTGTCTGTGATGTGTCGGCGTTTTTGCTCTGCACAGATCAAAGAGCTCTTTGTCGCGGCTTTCTGACGCTCGGTGCCTCAATGCCACCTTTTTGCCAGGTAACGACTGCGGTGTTGGCTACTGGTATAAAATAACCTTATGTTTttaggttaaaggtcccatgacttggtactctttggatgcttttatataggccttagtggtcccctaatactgtatctgaagtctctttcccgaaattcagccttggtgcagaattacagccact

Function

GO: NA

KEGG:

id description
ko04144 Endocytosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 206530 17494748 ~ 17495773 (+) True G27895
TU37100 lncRNA upstream 236659 17381379 ~ 17465644 (+) True G27884
TU37095 lncRNA upstream 388213 17313888 ~ 17314090 (+) True G27879
TU37093 lncRNA upstream 407352 17292715 ~ 17294951 (+) True G27877
TU37037 lncRNA upstream 529832 17172255 ~ 17172471 (+) True G27840
TU37205 lncRNA downstream 18178 17738435 ~ 17743448 (+) False LOC120555788
TU37215 lncRNA downstream 105607 17825864 ~ 17826910 (+) True G27977
TU37336 lncRNA downstream 151489 17871746 ~ 17876173 (+) True G28066
TU37335 lncRNA downstream 168504 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA downstream 168593 17888850 ~ 17889217 (+) False G28065
XM_039795908.1 mRNA upstream 178 17695108 ~ 17702125 (+) True cops2
XM_039795909.1 mRNA upstream 178 17695108 ~ 17702125 (+) False cops2
XM_039795023.1 mRNA upstream 77771 17610313 ~ 17624532 (+) True LOC120555872
XM_039795021.1 mRNA upstream 78030 17609461 ~ 17624273 (+) False LOC120555872
XM_039795731.1 mRNA upstream 107142 17579325 ~ 17595161 (+) True slc30a4
XM_039794860.1 mRNA downstream 4288 17724545 ~ 17735832 (+) False LOC120555788
XM_039794859.1 mRNA downstream 4291 17724548 ~ 17736343 (+) False LOC120555788
XM_039794858.1 mRNA downstream 4292 17724549 ~ 17736343 (+) False LOC120555788
XM_039794856.1 mRNA downstream 41981 17762238 ~ 17823496 (+) True fbn1
XM_039794857.1 mRNA downstream 41988 17762245 ~ 17823496 (+) False fbn1
TU36678 other upstream 2215882 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2255911 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4464484 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4591964 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5670575 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 4291 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 841638 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1766989 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1777481 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1777836 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile