RNA id: TCONS_00073542


Basic Information

Item Value
RNA id TCONS_00073542
length 5515
RNA type mRNA
GC content 0.50
exon number 42
gene id XLOC_037376
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41821613 ~ 41979505 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTCATCAGCTGTTGCACCGGCGCGAGGATCTCCTCTCTCTGAAGCGGGAAAGTTTCATCCGATTCCCAACAACAATCCCATGTAGCTATCGGGACGGAGCAGTTTCACGAACTGAAATGGCAAGAAGGTGTCTCGCGGTTCTGGAGCGGTTCTTCTGCCTCGTGTTGATCTTGTCTCCGGTTGCATTACAGCAGAGAGAAGAAAGTGGAGTGTCGCTGTTGCAACTAATTGGCGATCCTCCACCCAACGGCGTCTCCAAAGTCTTCGACCAAGCAAACAGTCCTGGATATGTGTTTGGACCAAGCTCAAATGTGGGTCAGTCTGCTGCAGCCCACCTGCCCAATCCCTTCTACCGCGATTTCTCCCTCATCTTCAATATAAAACCCACATCCTCCAAGCCTGGCGTGATCTTCTCCATCACTGACCCCACTCAGAACATCATGTATGTTGGCGTGAAGCTGTCGGCGGTGGAAAGAGGCAAACAGTCCATTATCTTCTACTACACCGAGCCTGATTCGCAGAGCTCCTATGAGGCGGCCAGATTCTCTGTTTCCTCCATGTTGAACATATGGACGCGCTTTTCCATCAGCGTTTTGAACGAGCAGGTTTCTCTCTACTTTAACTGCGACTCGGATCCTCAGGTTGTCAATTTCGAGCGCTCGCCTGATGATATGGACATGGATGCTGGCGCTGGAGTGTTTGTGGGACATGCCAGTGGAGCAGACCCGGATAAGTTTTTGGGTGTTATTGGTGATCTGAGGGTGTCGAGAGACCCTGGGGCGGCTGAACGGCACTGTGAAGAAGAGGAGGATGACTATGCAACAGAGGCATCAGGTGATTACGGAGCAAGTGGAGATGGAGAGCAGCCATCACCAGTTCAGCCAACACCTCCATCATCTCGGCCAATCCAGCGGCCACCGGTGATTAGCAGGGATCCTATACAGCGGCCACCGGTGATTAGCAGGGAGCCTATACAGCAGACAGTTGCAAGAGGAGAGAAGGGTGACAGAGGGGAGAAGGGTGCTAAAGGTGACAGGGGTCTTGCTGGGCCAAAGGGTGATGTGGGGTCTGGATCAGTGTCTGGTGGAGGATCAAAAGGAGACAAGGGCGTCCCAGGAGAGAAAGGAATGAAGGGCACTTCTGGTTTTGGTTATCCTGGATCTAAGGGTGACCGTGGCCCCCCTGGACCTCCAGGACCTCCGGGTCCCCAAGGGCCCAGTGCAGAGGTAGAGGTGCGGGGCGATGGGTCAGTTGTGCAGAAAGTCACAGGACCAAGAGGACCACCTGGACCCCAAGGACCCCCTGGTCCCCCTGGACCTGAAGGGGAGCCGGGTGACCCTGGTGAAGATGGAAAAGCTGGCCAAGTTGGACCTTCTGGTTTTCCTGGAAATCCTGGGAATCCTGGACCCAAAGGAGATAAGggaGATCGAGGTGAAAGTCAGCCAGGACCCCGTGGGCCGCCTGGTCCTCCCGGCCCACCAGGACCCTCCTCTGGCTTTGATAGACCTACGTTTGTGGACATGGAGGGCTCTGGATTTGATATGGACAGTGTGCGGGCAGTGCCTGGTTTGCCTGGTCCACCTGGTCCTCCTGGTCCCCCTGGTCCCCCTGGCTCTGCATCTTCAGGCTCTGGTGGTTTTGGGCCACCTGGTCCTCCTGGGCAAAATGGGGCGCCAGGTCAGCCGggACTTTCGGGTGTACCAGGTGCTGATGGAAAACCAGGCTTACCTGGTCCAAAAGGAGAGAAGGGTGATGCCGGTGAGCTGGGCCTTCCTGGACCGGTGGGAGAGAAGGGTGCCAAAGGTTCTTCTGGTCCCCCTGGCACCACTGGGATTGGTGGGCCTGCTGGTCTTCCAGGACCAATTGGACCTATTGGACTTCCAGGACCACCTGGTCCTCCTGGACCAAGCTTTAATGTTGGTTTTgatgACATGGAAGGTTCTGGTGTTCACTTCAGTTCAGTACCTGGAGTAAGAGGACCAGTTGGAATCCcgGGGCCACCTGGTGTCCCAGGGCCACAGGGTCAGCCTGGATTCCCAGGGCTTCCTGGTGAGAAAGGCAGTTTAGGAGCTCAGGGAAATGATGGTCTTCCTGGTGCAGATGGCTTCCCTGGACCACAGGGACCAAAGGGCGACAAAGGAGAGCGAGGCGACAGGGGTGAACCTGGtcgagatggacatggtcatccAGGCCAACCAGGCCCTCCTGGACCACCTGGACAGATTATTTATCGCTACTCTGAACATTATGATGAAGTTGGAGGAACGGGGGCTCAGGGTGGTTCTGGTGTTCCTGGCCAAGCAGGATTCCCAGGCCCAATGGGACCAAAGGGTGACAGAGGTGAGCCTGGTCTTCCAGGCTATGACATTAAGGGGGAGAAAGGAGAACCTGGACTTATTCTTGGACCTGATGGAAATCCACTTTACCTTGGTGGATTGACAGGACAGAAGGGTGAGAGAGGTATTTCTGGACCAGTCGGACCTCCTGGTCCAGCAGGACCTCCTGGTGCAAAAGGTGAATTCGGAATGCCAGGCAGACCTGGTCGTCCAGGTGTGAACGGATATAAAGGAGAGAAGGGAGAGCCAAGTTCAGGCTCTGGATATGGTTACCCGGGTCCCCCTGGTCCCCCAGGACCCCCTGGTCCCCCCGGACCCGCTGTGCCCTTGGACAGATTTGGCAGATATGAAGATTATGCAAGGCTCTATCCAGctacgAAAGGAGAGAAAGGAGACCAAGGAGCTCCTGGCATTCCCGGATCGCCAGGTTTTTCCACAAACTTTGATATATATTCACTCAAGAATGAGATGAAGGGTGAGCGGGGAGAGTCTGGTCTTAAAGGAGAGAAAGGAGAACCAGGAGGTGGATTTTATGACCCTCGTTTTGGAGCTGTACAAGGACCACCAGGGAACCCAGGACCTGCTGGACCTAAAGGAGACTCAATCAGAGGCCCACCTGGACCCCAGGGCCCACCAGGAACACCCGGGGTTGGTTATGATGGTCGACCAGGTAATCCAGGACCTCCTGGACCACCTGGTCCACCAGGGTCCCCATCACTGCCAGGACCCTATAGGCCACCACTCAGTATTCCTGGACCTCCAGGTCCTCCTGGCCCACCTGGAATTCCTGGCACTGGATCAGGGGTGACTGTCCTGAGGTCTCATGACATAATGATTGCTACAGCACGCAGACAGACAGAAGGGACTCTGATTTACATTCTGGACAGAAACGATCTCTACCTCAGAGTTCGGGACGGTGTTAGACAAGTGATGCTTGGGGATTATAAACCTCTTTATGGAGAGCTGGACAATGAAGTGGCAGCAGTCCAGCCACCCCCTGTTGTTCACTATTCCCAGGACCACACGGCTAACAATGGCGCAGAGCAGATTTCTCCACCACACCAGCCTATTGATTTCCCAACGAGAGAGCAGGAGAACAGAAACCCCAACCCGCAACCTGACCCCCGATACCCGGATCCACGATACCCACCATACACTGACAACAGATACACCGATCCTGTAGAGCCCAACATCAGATATCCTGTTCAACCCGAGAGGAATCCAATCACTCCAGCCCGCCGTCCTATCCCTCCTGTCAATCAGCCAGGAGGCCACGCCCACACCCACACTTCCGGACCAGGGTTGCATCTTATTGCTCTGAATTCTCCACAAGTGGGCAACATGAGAGGCATTCGCGGGGCAGACTTCATGTGCTTCCAGCAGGCACGGGCCGTTGGCATGAAGGGAACGTTCAGAGCCTTCCTGTCCTCCAAACTCCAGGATCTCTACAGTATCGTCCGCAGATCTGACAGAGAGACATTACCAATTGTTAACCTAAAGGATCAAGTCCTCTTCAGCAGCTGGGAGTCTCTCTTCAGTGACTCAGAGAGCAGGATGAAGGACAATGCACCCATCTACTCGTTTGATGGCAGAGATGTCCTGAGGGACAGTGCCTGGCCAGAGAAGATGATTTGGCACGGATCGGATGGCAGGGGTCACAGGCAAACGGATAACTACTGCGAGACATGGAGGGCCGGAGACCGCGCTGTCACAGGCCTGGCCTCGTCCCTGCAGGCTGGTCAACTCCTCCAGCAGACCTCCAGCAGCTGCTCCAGCTCCTACATCGTGCTGTGCATCGAGAACAGCTACATGACACAGTCCAAGAAATAAAGCCGTCCGAAAGAGCCTTTGAAAACTCAACACTTCAGTCATACAGGCCCAGATTTTGCTCCAGTAGATGCCTGTATCTAATGAATGGAAATGTTAAAGAGTAAATTAAACTGAGTCTGCCTTAAGGAGAATTTGCCAGTCATCTATTCGCCGTAACGCCAAAGGTTGAACGTGGAGGTGTTTGCTCTTTCTCAGGGCACTGGCACATCTTTTTCAGGGGGTTAAACCAGAGAAGTGAGGCCAACTGAGgcagttttttttaactgtatccATATAAAATTTTGTATATGAATTGTTTGTcttctgtgttgttgtttttttttttttgaaaaatgtcttaATTGGTATATTTAACCaattttagctatatttttttgtgCAACCATTTTCCTTCAAGGTTATGTTGGATATCGAGGAGCAAACCTTGACATAGTTTTAGAATTTGAAAAGAGAAagtatttattttgcaataaagaGAGCTAAAATATGATTTGAAACCACAAAGCATATTTGTTTGCTATTTTAGCAAGCACATTTTTGCTACTTCAACAGATGTAAGACTGAAGTGTAGCTTATAAATGGCTGCTCTCTAAAAACCTCTAGTGGGCAAAGAGAAATGCCTTAAATAATTCAACGCTTACCCCTCAAGAGTGTTTTGTACAAAACAAATGATTTGATCTGTTGCATCTATGGAatcactgtgttttttttttctattgtgatTAATGTGAAATTTCATATGGACATCTGAGTGTCATTATTTTACTCTTCTGGTTGATTCCAGAAGTTTCCATGAGTAACGGGAATGGGAAGCTGAATAGtatttgtaacaaatattttaaggaaaaaaattcTGTTACTAAAAAATAGTGGTTACATGTCCCATAATTCAAAGGCATTGGTTGCATTCGGTGCTTTTTGCTGATGAAACAGCTGCTGACAGTGTTGTTTGGGAGAGACAGATGTGTTTTATGAAGACACTTTATCTTCTATCCATATGGAATTTCAGACACCTAATCCACTCTAGTGCTACTGATGTGTTCAGCACAACCCTGTGGGCTTctagtctttttttctttctttccttttgtaCTAGTATGTGCTGCATCATGTCTCGGAGGcactgacattttttatttttcattagccACAATAATTTTGGCACCACTTCTTGTGTATTAAAATCTATTTCCTTAAAACCTACACATATCTTAGACTATGTTGTCTGttcatgcacaatattaacaTATCGGATGTCGTTCACAAGCCATTTCATATCATGATTGTTTACTGTTCACTGActgtttactaaaaaaaaaaataaaggtacatTTTTCCTCTTCAAA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030516-3 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within neural crest cell migration. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including anterior neural keel; digestive system; nervous system; neural plate; and pronephros. Human ortholog(s) of this gene implicated in primary angle-closure glaucoma. Orthologous to human COL18A1 (collagen type XVIII alpha 1 chain).

Ensembl:

ensembl_id ENSDART00000097295

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073541 lncRNA upstream 15258 41788217 ~ 41806355 (+) True XLOC_037375
TCONS_00073535 lncRNA upstream 222786 41509948 ~ 41598827 (+) True XLOC_037369
TCONS_00073534 lncRNA upstream 242611 41509948 ~ 41579002 (+) False XLOC_037369
TCONS_00073533 lncRNA upstream 342227 41474942 ~ 41479386 (+) True XLOC_037368
TCONS_00075179 lncRNA upstream 575105 41238241 ~ 41246508 (+) False XLOC_037366
TCONS_00075180 lncRNA downstream 122696 42102201 ~ 42108086 (+) True XLOC_037379
TCONS_00074932 lncRNA downstream 178871 42158376 ~ 42158616 (+) True XLOC_037381
TCONS_00075181 lncRNA downstream 369453 42348958 ~ 42500284 (+) False XLOC_037383
TCONS_00075182 lncRNA downstream 478594 42458099 ~ 42500284 (+) False XLOC_037383
TCONS_00075183 lncRNA downstream 478626 42458131 ~ 42500284 (+) False XLOC_037383
TCONS_00073539 mRNA upstream 80193 41690153 ~ 41741420 (+) True XLOC_037373
TCONS_00073537 mRNA upstream 140560 41612642 ~ 41681053 (+) True XLOC_037371
TCONS_00073532 mRNA upstream 339963 41474623 ~ 41481650 (+) False XLOC_037368
TCONS_00073531 mRNA upstream 342091 41459772 ~ 41479522 (+) False XLOC_037368
TCONS_00073530 mRNA upstream 351205 41459759 ~ 41470408 (+) False XLOC_037368
TCONS_00073547 mRNA downstream 84401 42063906 ~ 42125329 (+) False XLOC_037378
TCONS_00073548 mRNA downstream 86525 42066030 ~ 42127228 (+) False XLOC_037378
TCONS_00073549 mRNA downstream 86532 42066037 ~ 42110002 (+) False XLOC_037378
TCONS_00073550 mRNA downstream 115715 42095220 ~ 42125329 (+) False XLOC_037378
TCONS_00073551 mRNA downstream 115715 42095220 ~ 42126086 (+) False XLOC_037378
TCONS_00073540 other upstream 88003 41733533 ~ 41733610 (+) True XLOC_037374
TCONS_00073538 other upstream 138603 41682926 ~ 41683010 (+) True XLOC_037372
TCONS_00073536 other upstream 228003 41593496 ~ 41593610 (+) True XLOC_037370
TCONS_00073529 other upstream 554770 41249457 ~ 41266843 (+) True XLOC_037367
TCONS_00073510 other upstream 924430 40895771 ~ 40897183 (+) True XLOC_037359
TCONS_00073545 other downstream 10581 41990086 ~ 42038319 (+) True XLOC_037377
TCONS_00073546 other downstream 61052 42040557 ~ 42095177 (+) False XLOC_037378
TCONS_00073552 other downstream 120232 42099737 ~ 42125384 (+) True XLOC_037378
TCONS_00073560 other downstream 1351890 43331395 ~ 43331511 (+) True XLOC_037386
TCONS_00073561 other downstream 1795746 43775251 ~ 43775365 (+) True XLOC_037387

Expression Profile

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