RNA id: XM_039794908.1


Basic Information

Item Value
RNA id XM_039794908.1
length 5318
RNA type mRNA
GC content 0.57
exon number 28
gene id neo1a
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 15599975 ~ 15787368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCCCAAACCATATTTTAGATTTTGCCTGAGCACAGAGGCGGCCAGGATCCAAACTTCCGTGTGACTCCACACCCTGTTTTCCGGGGAGCCGGTGGAGATCCAGCCCTGCCTTCTCAACACGCTGCTCTCTTACGTCCCGTCCGTGAACAGTGAGCTGGCCGCGGCGGAGATTTCTCCTTCTGGCCGGGATCTTATCTTTTCTCCAACTGAGCTCTTTCTGGTCTTTTCGGCGCTTGACATATAACGGGGTAGTAAAGTCGCCGGTTCGGTGCTCAGTCGCCTGCAAATCTTTTTGTCCTTGTGCTGCGCCTCCGTGGCAATGGATTGATttcggtgttttttttttttcctccgacCTCTGCCTCGACCAAGTTGAGAAAACAGTCTCTCTAACCTGCGGCTCTCTCTTCCCAGCTACATGTTTCATCCGGTCGGTTTTAAAAGTACCTGGCTCCGGATGTTTCTGCACATTTTAGgactttgaactttttttttgtccgcTTGTGCATTTGCAGGAGGTGGCCGGGGATTTtaaggatttctttttttttttttctttctttttttcttcttttttttttaaataaagcttCTCCGGGGTTCCTGAAGCCTGCAAAGATTTATTTGTGAAAAGTGATGGCCGAGCGGGGAGCTCTGtcgctcctctctctcctctgtctcaccTTTCTCTACACGGAGACCGCCGCGGCAAAGCATGTCGACAAAGGTTCAGCAGCGCAGCCCTTCAGCCCCTTCTGGTTCACTGTGGAGCCCCAGGACACACTGGCCATCCGGGGCAGCTCTGCACTGCTCAACTGCTCGGCCCACAGCGACGCAGCCACGCCGGCACGCATAGAGTGGAAGAAAGATGGCACCTTCATGAGCCTGGTTTCGGACGAGAGACGAAACATACTTCCCGACGGCTCGCTGTTCTTCACCCACGTGGTCCACTCTAAGCACAACAAGCCGGACGAGGGCACCTATCAGTGCGTTGCCACCATCGACAACCTAGGATCCATTTCCAGCCAGACGGCCCGTCTCTCAGTAGCAGGGATGCCCAGGTTTGTCAGCCAGCCATCGCCGACCACCGTGCACCAAGGGAACAACCAGGTGATGGCGTGCGAGGTCAACTCCGATCTGGTGCCCTTCACCAGGTGGGAGAAAGACCGCCTGCCGCTGGAGCTTAGCACCAGACTGGTCCAGCTGCCCAGCGGAGCCCTGGCGATCAGCAACGCCTCGGAGGCAGACGCCGGCCTTTACCGCTGTCTGGTGGAAAATGTGGGGTCGTCCAAGTCCAGCGACGAGGCCCAGCTCCAAATACTGCCAGAAACTGGAGAAGAGAGTAAGCTGGAGTTCCTGGTGCAGCCTGTGCCTGTGAACAAGGTGGTGGGCGCAAGCGTGCTGCTGCCGTGCCTGGTCACTGGTTACCCTGTACCACACATTCGTTGGATGTTTGGAGACAAGCTGCTGGAAGAAAGTGAGGGCCGTGTGGAGGTGCTGGGAGGAGGCAGTGTCCAGATATCTAATCTCACAGAGGAGGATGCCGGCATCTACACCTGCATGGCCGAAAATACCAATGGAACCATTGAAGCCCAGGCCCAACTCACCATACAAGTTCCTCCCCAGTTTGTCAAGCGGCCAGACAACATTTATGCCTATGAGTCCATGGACATCGTCTTTGAGTGTGAGGTTTCTGGGTCACCGGCTCCCACTGTCAAATGGGTCAAGAATGGAGATGCTGTCATCCCCAGTGACTACTTCAAAATAATTAAGGAGCACAACCTGCAGGTTCTGGGTCTGGTCAAGTCCGACGAGGGTTTCTATCAGTGCCTGGCAGAAAACGACGCAGGCAACATCCAGTCCAGCGCCCAACTCATCATCTTAGATCACGATGTTGCCCTGCCCTCTTTCCCTCCCCCCTCACTGACTCCTAACACTACTGACCATGTAACGCCAGGCTCCGGAGGCGTAGCCAGTCCAGCAGGGCCCACCCCCTCTGCCCCCCGAGACGTTGTAGCTTCGTTGGTCTCCACCCGCTTCATCAAGCTGACCTGGCGAGCGCCAGCCGAACCCCATGGAGACGACATAACCTACTCCGTTTTCTACAGCCAGGAGGGCACCAGCAGGGAGCGAGTAGTGAATACCAGCCGTCCAGGGGAGATGCAGGTCACCATCCAGAACCTCATGCCAGACACCAAATATCGCTTCAGGGTTGTGGCCCACAACAGCAACGGCCAGGGAGAGAGCTCTGCAGCGCTCAAAGTGGCCACCCAGGCTGAAGTCCAAGTGCCCGGCCCTGCTCCTAACCTGCAGGCGGTGTCCAACACGCcgacctctgtctctctcagctGGGACAAGCCCCTCACTGGCAACGGAGACATGCTCACCTACAAGTTGTACTACACAGACAAAAGCTTTGGCAACGAACAGGACGTTGACGTAGAGAGTCAGTCCCACACCATGACCGGGCTGAAGAAGAACACCGAGTACAGTTTCCGCGTGGTGGCCAACAACAAGCACGGCCCAGGCGTCTCCACCGACGACGTCGTCGTTCGCACGTTGTCTGACGtaCCAAGTGCTGCTCCTCAAAACCTCACTCTGGAGGTTCAGAACTCAAAGGGCATCATGCTTCGGTGGCAGCCCCCGCCCCTTAACGGCCAGAATGGGGAGATCACCGGCTACAAGATCAGATACAGGAAAGGATCCCGGAGGAGTGAAGCAGCCGAAACCACCGGAGGCACCCAGCTTTACAAGCTCATCGAGGGTCTAGAGCGTGGGACAGAATACTCCTTCCGGGTGTCGGCCATGACGGTGAACGGCACGGGACCTGCCACGGAGTGGACCACAGCAGAGACGTTTGAGAGCGACCTGGATGAATCCCGTGTGCCAGACCAGCCCAGCTCTCTCCATGTCCGGCCGCTGGTCAACAGCATCGTGGTGAGCTGGACGCCGCCAGAGAACCAGGACATTGTGGTGCGCGGTTACAGCATCGGCTATGGCATCGGCAGTCCCCATGCTCAGACCATCAAAGTGGACTACAAGCAGCGCTACTACACTATAGAGAACCTCGacccCAGCTCCCACTATGTGATCACACTGaaggcctacaataatgtgggTGAGGGGATTCCTGTGTATGAGAGTGCCATAACCAGACCACAGTCAGACCCCATAGACCCCGATGTTGACCTGTACGAACTCTATCATGCTCCATTCACCCCAGTACCAGATCCCTCTCCCATGATGCCACCCGTGGGTGTTCAGGCCTCCGTGCTGAGCCACGACACCATCAAGGTGACCTGGGCTGACAACTCGCTGCCCAAGAACCAAAAGATCACAGATAACCGCTTCTACACAGTGCGCTGGAAGACCAACATCCCTGCCAACACTAAAGTGAAGATGGCTAACACCACTAGCCTGAACCACATGGTGACGGGTCTGAAGCCCAACACGCTGTACGAGTTCTCCGTGATGGTCACCAAAGGGCGCCGCACAAGCACGTGGAGCATGACTGCACAGGGCACCACCTTTGAGACCATTCCCAGCTCCTCCCCGAAAGACGTGACCGTGGTGAGCAAAGAGAACAAACCTCGCACCATCATTGTCAACTGGCAGCCTCCCTCTGAGGCCAATGGAAAGATCACTGgctatataatCTACTACAGTACAGATGTGAACGCTGAGGTCCACGACTGGGTTATTGAACCAGTGGTGGGCAACCGCCTGACGCACCAGATCCAGGATCTGACGCTGGACACCACCTACTACTTCAAGATCCAGGCCCGGAACTCAAAGGGCATGGGCCCCATGTCTGAGGCCGTACATTTCCGCACTCCAAAAACCTCAAATGTTCCACCGAAGCAGCCATCAGGCAACCAACCCCCACAGGACCCTGGGACTGTTGGTAAATCAGGGGTTGGAGGCAACAGTGAAGGTCACATCCTGGTCATTGTCATCATCATCTCAGTGGGAGCCTTCACCATCATCGTAGTGGTGGTGGGGGCCTTCCTGTGCACACGGCGAACCACGTCCCACCAGAAGAAAAAGCGGGCTGCCTCAAAGTCCTCAAACGGCTCTCACAAATACAAGGGAAACTCCAAAGACCTGAAGCCACCTGATCTTTGGATTCACCATGAGAGGCTGGAGCTTAAACCCATGGACAAGTCGCCAGATCCCAACCCGGTCATGACAGAAACGCCCATCCCCCGCACCTCGCAGGACATCACGCCGGCCGATAGCGGCCTGGATAGCAACCCCCACCTGCAGCAGCGGCGCAACTCCTACCGTGGCCACGAATCAGAGGACAGCATGTCTACACTAGCAGGCCGACGAGGGATGAGGCCTAAAATGATGATGCCTTTTGATGCACAGCCGCCTCagcCTGTGATTAGTGCTCACCCCATCCATTCCCTTGATAACCATCACCACCATTATCACATGGGAAGCCTGGCGTCGCCAACACGCAGCTACCTCTACCACCAGGGCAGCGGGCACCCACGCCCGCACACCTGTGCCACCCCCATCTCCCATCTAGACAGGGTGGACTCTACAGaaTCGGTGAGGAATACCCCCAGTTCAGAGCCCCTCCCTCCAGCCGCCGCCTCTTCCCAGGCCTCCTGCCCCTCAGAGATCATGGCCGACCCTGAGGGCAGCTACCACGGCTCCACCACCACAGAGGAGGAGCCCAGCTACTCCAGCAACCTGCCCCCCCACCGCTCGGCCCACCCGCACGCCCACGCCCACCCGCTCAAGAGCTTCGGCGTACCTGCAATCCCAGGCACCAGCCATCCATCATACGAGTCGCCTGCCCTGCCCAGCACTCCCCTGCTCGCACAGACCGGACCTCCTACTCACCCCCATGTCGTTAAAACAGCCTGTATTGGAACACTAGGAAGGACTCGAACACCGATGGTCGTCACTGTGCCCAACGCCCCCGATGTGCCGGAGACCAGCAAGATGCTGGAAGATGTAGACAGCgtGCTTGCTTCCCTCGCCCCCTGCCCCTCCCCCGCCCCTCGCAGTAACCCTGTTCCTCTCCCTCAGAGCTACGAGCCCGACGAGCTGACCGAGGAGATGGCCCACCTCGAGGGCCTCATGAAGGACCTGAACGCCATCACCACAGCGCCATGAGCATGCCACAcacgcctacacacacacacacacactttctcgcacacgtacacacagaaAGTCACACACTCTCaaaagtcaaacaaacacaacccAAACATGAACCTTGGGAGCCAAAAGGCTGGTGGACACAAAATGGCTTCTTGTGCCCAAGAAAACTCtcacatccccccccccaccccaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36736 lncRNA downstream 3108 15596613 ~ 15596867 (-) True G27594
TU36729 lncRNA downstream 53184 15546578 ~ 15546791 (-) True G27587
TU36724 lncRNA downstream 64638 15534000 ~ 15535337 (-) True G27582
TU36690 lncRNA downstream 94307 15479306 ~ 15505668 (-) True G27552
XR_005638713.1 lncRNA upstream 31270 15818610 ~ 15848699 (-) True LOC120555431
XR_005638712.1 lncRNA upstream 32123 15819463 ~ 15848699 (-) False LOC120555431
XR_005638714.1 lncRNA upstream 42548 15829888 ~ 15848699 (-) False LOC120555431
TU36829 lncRNA upstream 241547 16028887 ~ 16029172 (-) True G27659
TU36855 lncRNA upstream 284229 16071569 ~ 16073508 (-) False LOC120556162
XM_039794905.1 mRNA downstream 8119 15580040 ~ 15591856 (-) True LOC120555812
XM_039795397.1 mRNA downstream 21883 15536974 ~ 15578092 (-) False csnk1g1
XM_039795206.1 mRNA upstream 69375 15856715 ~ 15872441 (-) True bbs4
XM_039795207.1 mRNA upstream 69375 15856715 ~ 15870911 (-) False bbs4
XM_039795209.1 mRNA upstream 85371 15872711 ~ 15884598 (-) False scamp2l
XM_039795208.1 mRNA upstream 85371 15872711 ~ 15884597 (-) True scamp2l
XM_039794731.1 mRNA upstream 99671 15887011 ~ 16017712 (-) False myo9aa
TU36517 other downstream 756070 14842713 ~ 14843905 (-) True G27420
TU36388 other downstream 1129630 14469758 ~ 14470345 (-) True G27321
XR_005638877.1 other downstream 2310711 13289210 ~ 13289264 (-) True LOC120556590
TU36095 other downstream 2504209 13069996 ~ 13095766 (-) True G27075
TU35932 other downstream 3295151 12304539 ~ 12304824 (-) True G26924
TU37150 other upstream 1720783 17508123 ~ 17513168 (-) False G27925
TU37147 other upstream 1722610 17509950 ~ 17513168 (-) False G27925
TU37149 other upstream 1722788 17510128 ~ 17513168 (-) True G27925
TU37410 other upstream 2430782 18218122 ~ 18220550 (-) True G28121
TU37599 other upstream 2595365 18382705 ~ 18383642 (-) True G28265

Expression Profile