RNA id: XM_039794945.1


Basic Information

Item Value
RNA id XM_039794945.1
length 4997
RNA type mRNA
GC content 0.48
exon number 27
gene id pla2r1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19277153 ~ 19305912 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTCTGGGAGTCAAACCAGGAGCTGCATGCGTGTTACCAGTTCAACCTGTACACCATCCTAACCTGGAGTCAGGCGCTGTCAACCTGTCAAGCTCAAGGTGGAAATCTGCTGAGCATCACCAGCCTAGCAGAGCACAGATCGACTGGCAAGTGTTGGAGCGATGGTATGGATCGGGCTGAACCACCTGAAGGATAGACAGGGGTGGCAGTGGTCTGATGGAGCACCTCTATCACTGGTCAATTTCACCACAGCTCTGCCTGCCAGCCCGCTGCAGGACAACAGCCAGTGTGGAGTGTACAACTCAGCCTTCGAGGGTCACTGGCAGAGTCTGTCCTGTGAGTCTGCTCTGCCTTACATCTGTAAGAAGACGCCTAACGACACCCAGAGAGCCGAGCCACTAGAGAACTGGCAGTATATCCGCACAGAGTGTGCTAATGGTTGGTGGCCTCATAATGGTTTCTGCTACCGGCTGCTGTCAGAGACAGAAGCAGGAAGCTGGGAGGATTCTTCCCGGGCCTGTGGCTCTCAGGGGGCAAACCTCACCAGCCTCCACTCTCTGTCTGACGTGGAAATGCTGCTCAACCTCCTGGCTAACTTTTCTGGGGAGAGTATCGAGGCGTGGATCGGCCTTTGGAAAAAGGCCTCATCTCCGACTGTAGAGTGGTCTGATGGCTCCCCGGTAACTCTCACTCTTTGGCACCAGTATCACCCTCTTCGCAACCTGACGGATGCAACACTCTGTGTCAAAGCAGACAGGGAGGAAGGTAACTGGCTTTTAGCCTCATGTGATGAGCGGCTGCCTGCTGTGTGTAGAAGAGAAAGCCAGAATCACATTCATCAGCCTGGAACCTGGGATGAGGGTTGTCCTGAGGGCTGGAAGCGACACGGCCACTCCTGCTACACGGTGACTAGCCATGAACAGAGCTATGGAGATGCACTGATGGGATATTACTGCAAGGCTTCTCTCCTAACTGTGGAAAACAGGTTTGAGCAGGCATTTGTCAACAGTTTGCTGAGCGAGAGTGGGACCAACAGCAGCAGGTATTACTGGATCGGCCTCACGGACCAGGAGAAGAAGGGAGAGTACAGCTGGCTTCTTCACAATGGCTCCTCGCTGCCTCTCACCTTCACAAACTGGAACAAACACCAACCAGTCAGTGCTGGTGGATGTGTTGCTATGTCAGGTGGCCCTGCTTTGGGTCACTGGGAAGTTAAAGACTGCAAGTCCCACAAGGCATTTTCAGTGTGCAAGCAGAGCATCAGCAGTTACCATGATGTCCAGCTGCCAGAGCACCACATTGATGCCTACGCCCCTTGTCCTCCAGGGTGGGAATCACACTCTGGGATGCTCCACTGTTTTAAGGTGTTCCACGATGAGAAAGTTCTGATGAAGCGTTCCTGGGTGGAAGCCGACTTCTTCTGCCAGGCCCTCGGTGCTCAGCTGGCCAGTTTCCACCACTATGAGGAGCAGGTGTTTGTTAAGCAGCTCCTCTCTACCATGTTTGAAGGaacagaGGGTCGCTGGTTCTGGGTGGGTTTAAATAAGAGAGACCTTGAACATCCCGGAGCCTGGGAATGGTCTGATGGTTCTCCTGTGGTGACGTCCTTCATAGCGGATAAGAACGAGGAGGATGACAGGAGGGACTGTGCTATGTACAGCGACCTGACCAACACTCTCATGCCTCAGCCCTGTGACACCAAACACGAGTGGATCTGCAAGCTGTCCAGAGGTGATAAACTGAAAAAACCCTATTGGTACACTGAGCAGAGCGAGCCGTGGGTGTTTTACCGTGGGGCTGAGTACCTGCTGGCCAAGCAGCCCTTTGATTGGGACGCCGTCTCTCTGGCCTGTCAGATGATGGGAGCCTACCTGCTGTCCATTCACTCCAGAGAGGAGCTGCACTTTGTCAAGGAGCGCTTGCGGCGGCTCTCGCTGGGCCCGACAGACTGGTGGATCGGCCTGTCCATTGGGCAGCCTGGAGAGGaggtcaggtggAGCGACAAGACAGAGGTAGAATTTCAGAACTGGGAACAGGGGAGGACCGGTGGTGGTCTAAGGAAAAACGAGATGTGTGTCACCATGTCCTCTTCATCAGGGAAATGGTCAGCGAGTAAATGCAGCGATCTCCACGGCTACGTTTGCAAGAGAAAGACTGTGTCTGTGGTGGAGACTCCCAGGGAGCCACACTACATCGGAGGATGTCCGGAAAATTGGCTGTACTTTGGACACAAGtgTCTCCTGCTTCACCTCCCTGACAGCCCAAAGGAGGGAAAGAGTTGGAAAGATGCCCAGTCCATCTGCTCCTCATTCGCTGGTTCGCTGGTTGCTATAGAAAACGAGATTGAACAAGCCTACATCACCATGTTGCTCCAGGGAAGCTCTGTAGGTGTGTGGATTGGTCTGGAGGACTCCATGAAATGGACCAATGGGAAATCAGTCAGCTATACCAACTGGTCTCCAATTGAACCAAAGAGCTACCTAACTGAGGATCAGTGGCTCACTGGATTTGCTGATGAGCCATTATGTACTGTTCTGTCCAACAACCACAACTTCCACCTGACAGGGAAGTGGTACGATGAGAAATGCAGCGAGAGTGGGTATGGCTTTGTATGTGAAAAACCTCAAGATACATCCAAACCCCCCACCCACTCCTATCACCACCCTCTCCCTGACAATATTGAGTACAGGAGCCGCAGCTACAAAGTTGTGTCTGGCAACATGAGCTGGTACGACGCGATGCATATGTGCATAGAGAATGATTCTGACCTAGTGAGCGTTACAGATGCCTACCACCAGGCTTTCCTTACTGTCCTTGTCAATAGATTGGCAGTCCCCCACTGGATTGGACTGTATAGTCAAGACAGTGGCATCAATTATCAGTGGTCAGATGGCAGTGACACAGTGTACACACACTGGGACGCAGCCGATGACGATGACAACTTTGTGACGGGAGAATGTGTGTACATGGACGTGAGCGGAGGCTGGCGGAGAGCTGACTGTGAATCTCTGCTACCAGGAGCCCTGTGTCATGTTCCCCCACCAAgcAGTAAACCATTTATCTCATATGAGGTGGCGTGTCCCTCCACGTGGGTGAAATTTGGACATGGCTGTTACAACTTTGAGCCTGTGGTGCAGAAACTTACATTCAAAGAGTCAAGAGAGCACTGCAGGCAAAAAGTCAACACCTCAGATGTCCTGACCAttgagagtgagacagagaatCGGTTTGTTCTGGAGCAGCTGTGGTCGTCGGGGTTCCTTCACCACGCCGTGTGGTTGGGGATGTACTTCAACATTGACACTGATTCTATGGCCTGGGTGGATGGTTCACCTATGGACTACACCAACTGGCCCAACAAAGCCCCAGACTCCAAGCTGCTGACTGCAGATGCCTGTGTTACTACCAAGGTGGTTGACGGTTTGTGGCACCTGTCACAGTGCACCGAGCAGCTCGGCTTCGTCTGCAAAACCATCTCAGATGTAATTCCTGCGGTGGAAGTGGAAATGCTAAATGGTTTACATCATGGCATCATCCCTGCTGCAGTGCTGGTGGCTGTACTGATCTTTGCCCTGCTGGCAGGAGCGATGTGGTTTGTGTACAAGAGGAACGCTTCACGTTTTCGTGGGCTTCATAATCTCGGCAGTGCTTATTACAGACAAACCAGCTCACAGGCTACAGAGTCGGATGGAAATGTGCTGATCGGTGACCTGGAGGCTCACTCCGGAGAATAGTACTCAATGACTCCTTGAAGTTCTCTGTTGGTCGCTCGCGCCATTTCACCATCAGGTATAAATGCCATATGACACTGTAAAGCTGTGACTCCTCGGGACAGTGGTGAGATGATGACGGCAAAgattttgttttgtaatttgAGAATGTGTTTGGAGGATCCCAGTTGCTCTCAACTGTTTTCAGTCattcaaaacatttaaaggagacatatcaggctcattttcaggttcatacttgtatttggttttttactagaacatgtttaatagtttacaaaattaatttttctcatactgtctgtctaaaatgctccgttttagcgcctgtctctttaagtccctctcccaaaaagcccagtctgctctgattggattCCAAGAAACCTTTGCAAAGGTAGTTTTTAACCCGTGTGGAGATACTCAGATATGGGGTGGTATATTCTAATGAGCCAGCATGTGACATAGGGGAGCCAACTCTGAATGGCTATTTGAATCCCGTGTTTTCTGACCTTGGCAGCCTGCAAATAAATTGACTGGGTTTTCTTTATTTCACAGTTTATGGGTTGGTATGCACTCCAAATACCCAAATGTATGTGCACAAGCACTGAAAAAGTGATATTCATGATATGTCCCCTTTAAATGAGACAAATGTTTTTTGAGGATATGTTTTGTGATGACAATGAAGAGCCCACTTTTGAATTTCTAAACTATCAAAGTTCACGTAAATTGCAATGTTGAAGAAGGGATGTTTGAGTTGACTTGTTAAAAGAGGTACTGAGCACTTGATGGTTGTCATAGTCCTGCATGAGGACTTACTCAATTATATTTGGGTAAATTATTTGGATAATAAAGAAAGGTTTTACGTAACAAGATTCAAACAGGTGAAAGAAAATATTGGTCTACTTGTCAAGGTCAAAATGAACTTTCATTGCCATAAATATAAGCCAGATTGAAGGTTATGTGTGTGATAATTTTGCATATTTCATTCAGAATTCAGGAGCTGTTCAAGCTACACACGTGGTACAGCAATGTTGTCAGTattacttttgtatttttattttatttttttaagtacacATGCTGTATAGTGATAagagttgtttttgtatgtttaaaagtaacagaaaatgtgTAAGGCATAACTGAGAATTGTATTGTTCTCTTGTTCACTTTTGTCTGCTGATGCAAAGCAAAATTTTAGATGTATTTTGCacaattttctttgtgttttaataAATTGAGGTTAGGCCTAACAATGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37890 lncRNA upstream 50255 19229955 ~ 19230628 (+) True G28492
TU37873 lncRNA upstream 82656 19196746 ~ 19198227 (+) True G28479
TU37867 lncRNA upstream 87618 19191772 ~ 19193265 (+) True G28474
TU37865 lncRNA upstream 89721 19190118 ~ 19191162 (+) True G28473
TU37857 lncRNA upstream 124070 19156597 ~ 19156813 (+) True G28465
TU37927 lncRNA downstream 17120 19323032 ~ 19344125 (+) True G28526
TU38003 lncRNA downstream 158298 19464210 ~ 19464532 (+) True G28571
TU38004 lncRNA downstream 159138 19465050 ~ 19465340 (+) True G28572
TU38005 lncRNA downstream 160400 19466312 ~ 19466524 (+) True G28573
TU38006 lncRNA downstream 160716 19466628 ~ 19468243 (+) True G28574
XM_039794946.1 mRNA upstream 5078 19263785 ~ 19275805 (+) True itgb6
XM_039794947.1 mRNA upstream 6136 19261291 ~ 19274747 (+) False itgb6
XM_039794948.1 mRNA upstream 6136 19263648 ~ 19274747 (+) False itgb6
XM_039795468.1 mRNA upstream 24754 19237245 ~ 19256129 (+) False rbms1a
XM_039794289.1 mRNA downstream 2426 19308338 ~ 19341089 (+) False ly75
XM_039794288.1 mRNA downstream 2611 19308523 ~ 19342577 (+) True ly75
XM_039794220.1 mRNA downstream 68069 19373981 ~ 19444669 (+) False baz2ba
XM_039794216.1 mRNA downstream 68069 19373981 ~ 19444669 (+) True baz2ba
XM_039794227.1 mRNA downstream 68069 19373981 ~ 19444669 (+) False baz2ba
TU37478 other upstream 712403 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1538149 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3794462 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3834491 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 6043064 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 181334 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 191826 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 192181 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 206444 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1405192 20711104 ~ 20761147 (+) True G28770

Expression Profile