RNA id: XM_039794946.1


Basic Information

Item Value
RNA id XM_039794946.1
length 3405
RNA type mRNA
GC content 0.47
exon number 15
gene id itgb6
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19261291 ~ 19275805 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGCTTATACTGCTGAGCCTGATTCTCCGCTACTGGATCAGCACCGTGGAAGGATCATGTTCAGCTGGCAGCGCTGTGACCTGTGATGAGTGTCTGCAGCTCAGTTCTCACTGTGCCTGGTGCACACAGGAGAATTTTACAGACTGGTTTTCAGTCAGTGAAAGGTGTGAAACACTGGATATCTTACTAGAAAAGGGTTGTGCCAGGGACCAGCTGGAGTTCCCTGTCTCCAAAGGTCAAATCCTGCAGGATCGCCCACTCGGAAAGAAGACTGGCAACGTAAACAGCACTCAGATCTCCCCGCAGAAAATGGCACTCAAGCTGCGTCCTGGCAGCAAGGTGACTTTCCAGGTCAAGATTCAACACACAGAGGACTATCCTGTGGACATATACTACCTGATGGACCTGTCAGCATCCATGATCGACGATCTGGCGATGATCAAAGACTTGGGCTCCTCTTTGTCGAAAGAGATGGCCAAGCTCACCAGTAAATTTCGAATGGGCTTTGGCTCTTTTGTGGAGAAACCCATCCTGCCATTCATCAAAATCACAGAAGAAGATCTGGCCAACCCCTGCAGCAGCGTTGGCGCAACCTGCCTGCCAACGTTTGGCTACAAACACGTCTTGTCCCTGACGAGCAGCACCGACAAGTTCAACAAGATAATCGCAATGCAGCGAGTATCTGCAAATATTGATGTGCCAGAGTGTGGCTTTGACGCCGTCATGCAGGCAGCTGTTTGTGGGGACAAGATAGGCTGGAGGAATGATTCGATGCGTTTGCTGGTGTTTGTCAGTGATGCTGACTCACACTTTGGGATGGACAGTAAGATGGCCGGCATCGTGATTCCCAACGATGGGCAGTGTCACCTGGATGCCAACAATGAATACTCCATGTCCGCAGTGCAGGAGTATCCAACTCTTGGTCAGTTGATTGATAAGGTGGTGGAGAACAATATCTTACTGATATTTGCTGTGACAGAAGGACAGAAACTGAACTATAAGaaCTATGCAAATCTAATACCTGGCGCCACAGTTGGAGTCCTGGCGACAGATTCGCGGAACATCCTGGAACTGATTGTAACAGCATACAAAGAACTGCGTTCAGAGATTGAACTGGAGGTCCTTGGAGACACAGAAGAGCTCCAGATGTCCTTTACAACCATTTGCCCAAATGGGACCGTCCTCACTGATGAAAAACGCTGCTCCAACATCAAACCTGGAGAGACGGTAGTGTTCAACGTGTCTGTGGAGCTCCCAGGATGCCTGTCCGGAGTTCGCCACTTCTCCCTCAAACCGGTGGGTTTACAGGACAGTCTGGAGGTGCAACTGGAGTCTCTTTGCTCGTGCGACTGCCGGCAGCCTCCTGAAGCAAACAGCAGCCAGTGCATCGAGGGCCAGGGGGCTTTCCAGTGcggcgtatgtgtgtgtcagccgGGGTTCCTGGGATCGGAGTGTGAATGCAATGAGGAAAGAGCTTTGTTGAGCAACTGCCTCTCACACAATGAGTCTGAGATATGCAGTGGTCAGGGGCAGTGCTACtgcggacagtgtgtgtgtcatgcATCCAGCTTTGGACGCATCTACGGACCTTACTGCGAGTGTGACAATTACTCCTGTGTTCGTTTCCGTGGGGAGCTCTGTGGAGGCCACGGGGTGTGTGACTGCGGGGAGTGTCACTGTGAAAGCGGCTGGACAGGGGAGTATTGTAACTGCAGCACCAGCACTGAGGCGTGCATGTCAGAGGATGGCACTTTCTGCAGTGGTCGGGGGAGATGTGAGTGTGGCCACTGTGTCTGCTCTGTACCCGGAGCATCTGGGGACAAGTGTGAGAGGTGTCCAACATGCGGAGACGCCTGTAGCTCTGCAAGGACCTGTGTAGAGTGCCATCTGCTAGATAAGGACGATGGCAAGTTGTGTGATCAAAAGTGCAGCACCCCTAAAAtttccatcaacacaacagcagATTATGACAAGAGCCCTTCTATGCAATGCGCGCTGATGATGGAGAATGAGTGCCGGATCTCATTTAATGCAGTAAGAAGTGAGACGGGGACCATTGTCTATGATCTCCAGATGTACGGTTGCCCGGAGCCTCCCAACATCCCCATGATTATTCTAGGGGTCTCTCTTTCCATCGTGTGTATCGGCCTGATTCTGCTGGCTGTGTGGAAGGTGCTGGTGTCAGTCCATGACCGCAAAGAGGTGGCCAAGTTTGAGGCTGAGAGGGCAAAGGCAAAATGGCAGACAgGGACCAACCCTCTGTTCAAAAGCTCAACATCTACATTCAAAAATGTAACTTataagaagacagagagagaaaagatcaTTACACTGGATCACTACTAATGATAAACTGGAGGCAAACCAAGatatgagtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacagaaagGGAAAAACGTACTAAAATTAGTTTTTGTACGAATCTCTGAGTTGATTCAGAGGTGGCATAGCACAGTAGACAACactgaacagacaaacacacatgatGAATTTGCTGCTGTAAACATGCACTGTCGATGTACTGTTAAACACTGCACTTTCCTGATGCATGGTCCTACAAACAAACTTTTGTCTACTGTAAAATGCAGCTTGGAAAGGAAGAGTGTACACTACAAGTGGTCTACTACTgaaatttttgttttgttttattctgaATGTAAATATAGGTTGCTGGTGGAttcatatgattttttttatattgtctttgttgttttattctaaGCAAGGCTGAGCCTTGTATGTTGATAATTGAGTTTTTTTAGTGGCATGGcacataaataaaattgaattttgaCTCTTTGTAAAATGCAACTTTCCGCATTCAAGGTTGTTTGTTTGTAGTTCTCAAATCCTCTGAAACTTATTGGTAAGATTTGGCATTAAGAAACACAATTTAAAGTTGATTTTGTTTACAGTGGGAGAGTGAACTCTGAGAGAGTCATCcctgtattttctcttttcagaCTAGTGATGGAAAAGCAAGAAAGTGAATTTACTCAATAACTGTTAATTAAGGTACTTGAACTTGACTTGAGTGTTTCCATTTTCTCCTACTCCACGCACTCAATGTTAAATTACCCACCGGACAAACTGCGTGGGGCCCTGAAAGCTCAGGTTCATTgtgtgtcagttttttttttttggtaatttgattacttaaaaatgtgcaacgCTAATGTAAAAGATTATCTGGGTCCTGCGTTATAATATATTCTTGTGGCCCTTTCTTTTAGAAAGGATCTGTGTTACAGTATATATTGTGCTCACATGCTGCAATTCACTTAATAAAGTTGTTTTTCATCCAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K06589 ITGB6; integrin beta 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37890 lncRNA upstream 33157 19229955 ~ 19230628 (+) True G28492
TU37873 lncRNA upstream 65558 19196746 ~ 19198227 (+) True G28479
TU37867 lncRNA upstream 70520 19191772 ~ 19193265 (+) True G28474
TU37865 lncRNA upstream 72623 19190118 ~ 19191162 (+) True G28473
TU37857 lncRNA upstream 106972 19156597 ~ 19156813 (+) True G28465
TU37927 lncRNA downstream 47227 19323032 ~ 19344125 (+) True G28526
TU38003 lncRNA downstream 188405 19464210 ~ 19464532 (+) True G28571
TU38004 lncRNA downstream 189245 19465050 ~ 19465340 (+) True G28572
TU38005 lncRNA downstream 190507 19466312 ~ 19466524 (+) True G28573
TU38006 lncRNA downstream 190823 19466628 ~ 19468243 (+) True G28574
XM_039795468.1 mRNA upstream 7656 19237245 ~ 19256129 (+) False rbms1a
XM_039795467.1 mRNA upstream 7656 19237252 ~ 19256129 (+) True rbms1a
XM_039794307.1 mRNA upstream 81877 19174192 ~ 19181908 (+) True atic
XM_039794262.1 mRNA upstream 94972 19164594 ~ 19168813 (+) True mnx2b
XM_039794968.1 mRNA upstream 130973 19126889 ~ 19132812 (+) True stk16
XM_039794943.1 mRNA downstream 1348 19277153 ~ 19305912 (+) True pla2r1
XM_039794945.1 mRNA downstream 5078 19280883 ~ 19305912 (+) False pla2r1
XM_039794289.1 mRNA downstream 32533 19308338 ~ 19341089 (+) False ly75
XM_039794288.1 mRNA downstream 32718 19308523 ~ 19342577 (+) True ly75
XM_039794220.1 mRNA downstream 98176 19373981 ~ 19444669 (+) False baz2ba
TU37478 other upstream 695305 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1521051 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3777364 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3817393 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 6025966 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 211441 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 221933 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 222288 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 236551 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1435299 20711104 ~ 20761147 (+) True G28770

Expression Profile