RNA id: XM_039794953.1


Basic Information

Item Value
RNA id XM_039794953.1
length 3190
RNA type mRNA
GC content 0.48
exon number 4
gene id minar1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 10934633 ~ 11138398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTTTCAATTCCCGGACAGCTCTTTACCACAGCATCACAGAAGGGAGGGGAAAACGTCGGACAATGGAGACAGACAGCTTGACTTATGGAGCTCAGGCGGAAGGATCTGTGGTTAACATGAAAACCAACCGAGCCAGTAGGCAAAATCTATTTTATCATTATTTACCTGAGCGGGTGCATGTTAGCATGTACTGtgcgttttgtttatttttgatttttcttttttagactGATGCTTGGATAGGTTCAAGTTCGTCTCTGTAAACCCTGATTAGGGGCTTGTGTCGAGATCCAGAGCGAATGACGCTTGATTACtctgagtttttttcttttttgttggatCTCCGATGATCTCGAGACATGCTGTACTGCAACGAGCTGATCAGACGAATCTCCGCTCTGTTCCCAACAATTCACGGTGCCAAGCTTCTCCCAAGGTAGGACCTCTTCTGTATGCCTGTTCCTGCCTCCCAGCAGCCATGGAACCCCTCCCTGAGTACTCTATGTTCATGGTCCGCATCCTGGATGAGCTGGACGCCAAGCACAACATTATTTCCTACCAGGACCTGTGCAAGTCCTTGTGCACTCGCTTCGACCTAGTGCAACTGGCCAAGCTCCGCAGCCTGCTCTTTTACACGGCATGCCTGGATCCAGCCTTTCCAGCCACCCTCTTCAAGGACAAGATACGCTGCTCCACGGAGGACCCGCAATCCAAGAAGCTCATGGTGGCAGCAGACATTGTCACCATGTTCAACTTGATCCAGATGAATGGAGGCATATCCAAAGACAAGCTCCCGATAGTGCATAGAGCCAAGTTCCACAAGAACCAGTCGGTGGAGCTGTGCAGGTCCGACAGTAATGACCATACATTTCAGGACTGTGAAAGAGGGCTTAGTTATGAGCACATGGATCACCCCAGGGATgaacatcatcatcaccaccaccaccaccatcatcaccGCCCCAAGCAGCACCCTGTAGCTCAGAGCACCCCTCCCTGTCCTAAAACATCTGAGTGCAACAACTGCCAGAAGTTTATTCCAACCTCTGACCCTAACTTTCTTCTGGGCGTCAGCAAGGACCTGAAATGTACAGCAGGCTTTCTGGACAAGCTGCACCATCTGCCCCAGTACTCCAGCGGTAGTCCACACTCTCCACCCTGTGAAATGCAGAGCACCTACTTTCCCATGGACATTGACAGCGGGTCCCACACCGACCAGGAGTCCCTGCAGTCCATCAGCCATCCAGAGACCTTCTCTGTTCACTCTTGCATCCAAAAGAGGAACATATTTAAGGAGGACTTCCACAACTTTGTGTCCTTCTCACCacagGTGATCACCACTGAGGAAAAACAGGGTAGGAAGGCTGCTGACGGCTACCACCGGAGGGAACTGCACAAGCCTGCTACATTCTTTAACCGCAGCTTTGAATTACCCTACAGTAACCCCTACTTTGAGCCAACATTTAACTCCCCTCTTCAAGACAGACGAAGGGTGAAGCACGAGAGCCTGGATGACTTACAGGCATCCACATACTTTGGACCGACCACAGTCTCTGAGTGCGTTAGCAGCAGGAAGTCCAGTAACAAAGCAAGGAAGCAGCCAGCGTTGCCGGTAAAGAGCCTTAGTCTCAACACAGAAGATGGGCCTTCAGACTTTGAGAAGTCATTTCTGAACAGCAAACCACTTAAAGAAAACCACCACCGCAATGTCAACATCATAAGCACTGACAACGAGCAGCATTTTCAAAGCTCAAAGGAAAAGGTAGTAGCTTCTCCATGTGGCTTTGCAAAGAAAACTAATGGAATAAGAAATAAGGATTTAGCACTGATAGTAAGTGGTTCTGTGGGTTTGGAGAAAAGAGACACAGCCAAAAGATTTAaggacaaaaatatgaacagtcTATCCTTTCAGGAAGTGGACAGCCCCTCTAGTGTTGGGACTCAAACAGAGCAGCCTGAGCGGAAAATGGTAAAGGAATACCCAGCTAAGTACAGTGAAAGAGAAAGTCACACCTTCAAACACTGCGATGAGGACTCTGAGGTCATTAGTGATGACATAAGTGACATTTTTCGTTTTCTGGATGATATGAGTGTTTGTGACTCTCTGGGCCTTGTCCAATCGTCATGCTACAACAGTAATGGGTCTCTCTCTCAGGTAACGCTAAAATCTGAAGGCGACAGCTCCCCTGAACGCAACACGGTCAAACTAGCCAAGTCGAAGCTGGATCGCCTCTTCCATTCGCTAGAAAACACGGACGATGAGCTCAAATCAAGTGTGTGCAAGCTGGTAATGAGGATTGGTGAGATCGAAAAGAAGCTAGAATCTCTGTCAGGGGTTCGCAGTGAGATCTCCCAGGTGCTTTCCAAACTCAATAAGCTGGACGAGAAGATCCAGGAGCCCGAGGCCAATAGGAGAGACGGGAAGACAGCATCTGGATCTGGATCCACTGCCACCACCGACAAGCCACAGCCCCACCTTCATCCACATCCCGACACTACCGTCTCACCACGTGTTTTCCAGTGCCACACCACCGGTCACAATGTCAAAATGGACAATGGCACTTCAGGGGAGTGGTGCTGCTCCGATGGGAGTACCAGCGATAGCCTCACGGTAAAAGCTCTAAAGAAGACCATTTTCACCAGGAGGTCGTCCTGCTCACTCAACGAGGAGAACAGTGTCATTGATTCAAAGGTCGCCAGCATCACCAACTCCCCACGGGACTGGAGGACAGTCTCCTACTCTTGCCACTCAGGAGACGAGGACAAGGACCGAGATGGCAAGGGCAGACACCGGAAGGCTAAAGAGAAGCCGCTGCAGCCCACAAGTGTgcggtagagagagagagggaaaaaaagagaaagtgcTGAGTTTGTTGGTGAGTATGAAGTTAGCCGTAACTGCTTTAGCAGCTTTGAAGCATAAATTATTCTCAAAAGGTCGTTAGCAAATGAAGCAAAAGCCTTActgtttgcattttattttgtgaagtgggggagaaattatatatatgttgATGGACAGTAGGAGTGAGGCATATAGATACAATCTTTTATCACTAAATATGGAATTTTATGTCATGGTATCGATGCATATTGTGACATATATGAAAAAAATTGTTGAGAAACTGACCTACAGGactgtctgtttttgttgccattaatTGCCATTAAACGGTCCTGCACATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35609 lncRNA upstream 18491 10915712 ~ 10916142 (+) True G26639
TU35605 lncRNA upstream 33775 10900628 ~ 10900858 (+) True G26636
TU35603 lncRNA upstream 55329 10878942 ~ 10879304 (+) True G26634
TU35560 lncRNA upstream 162634 10770959 ~ 10771999 (+) True G26605
XR_005638795.1 lncRNA upstream 274058 10659569 ~ 10660575 (+) True LOC120556100
TU35682 lncRNA downstream 200904 11176874 ~ 11177288 (+) True G26711
TU35683 lncRNA downstream 201703 11177673 ~ 11179253 (+) True G26712
TU35684 lncRNA downstream 203641 11179611 ~ 11180118 (+) True G26713
TU35685 lncRNA downstream 211141 11187111 ~ 11187584 (+) True G26714
TU35693 lncRNA downstream 232751 11208721 ~ 11209301 (+) True G26722
XM_039795093.1 mRNA upstream 94484 10789845 ~ 10840149 (+) False shcbp1
XM_039795095.1 mRNA upstream 94484 10789853 ~ 10840149 (+) False shcbp1
XM_039795092.1 mRNA upstream 94484 10790070 ~ 10840149 (+) True shcbp1
XM_039795169.1 mRNA upstream 189307 10741710 ~ 10745326 (+) True LOC120555949
XM_039795168.1 mRNA upstream 325552 10527838 ~ 10609081 (+) True LOC120555948
XM_039794955.1 mRNA downstream 153951 11129921 ~ 11131472 (+) True LOC120555826
XM_039795938.1 mRNA downstream 927302 11903272 ~ 11912722 (+) True lto1
XM_039794273.1 mRNA downstream 1580077 12556047 ~ 12562553 (+) True LOC120555527
XM_039795800.1 mRNA downstream 2089982 13065952 ~ 13071332 (+) True LOC120556313
XM_039796119.1 mRNA downstream 2113565 13089535 ~ 13091435 (+) True LOC120556474
TU35313 other upstream 1074633 9847277 ~ 9860000 (+) True aldh1a3
TU35242 other upstream 1330197 9566831 ~ 9604436 (+) False adamts17
TU35121 other upstream 1779290 9068729 ~ 9155343 (+) True G26236
TU35083 other upstream 2174332 8753701 ~ 8760301 (+) True G26205
TU34541 other upstream 4644857 6289056 ~ 6289776 (+) False LOC120555541
XR_005638880.1 other downstream 1055651 12031621 ~ 12031728 (+) True LOC120556595
TU36106 other downstream 2133787 13109757 ~ 13110339 (+) True G27086
TU36145 other downstream 2259265 13235235 ~ 13237819 (+) True LOC120556202
TU36647 other downstream 4465507 15441477 ~ 15446392 (+) False LOC120556433
TU36678 other downstream 4499194 15475164 ~ 15486421 (+) False LOC120556001

Expression Profile