RNA id: XM_039794966.1


Basic Information

Item Value
RNA id XM_039794966.1
length 2115
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC120555834
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 19113966 ~ 19123540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATTGTAGAGATGGTTACAGGAGAACGCATTAGAAAAAAATGAGAAGAAGACTGATTTCATCAGCATCATGACTGAAGTGAACAAGCAATGTTTGTCTCTTTACATTCTGtgttcttttatttttcctATTTTCATGGAGGGATGctgtggaaaacaaaataaacaaacagTTGGGAACCAGCGGGGAACTTTTCCCCAGCACTACAGAGCTGTAGAGGGGGAAGACTTTATGATACCGTGTGAAACTGTGAACCAGCACATGGTGTCATGTTCCATGACAGGAGAAGGAAATGAAGGCCTATCCTTTGTCTGTGGGAGAGTCTTCCGAGCTGAAGCAAAACATTCTGGAAAGTACACATGCAGTGGCAGCAATATGTTTTTCCATCTGCAGGTGGTGAATAGAAGTCTGGGATGCTTACAGTCTAACAAGAGCCATAAGTCAGTATTGCTGACCGTGGCTCAAGGTGGGGAGATCTCCTGCCCAGGTAGCAACTGTAGTAACAACCCAGAGATCATTTGGTACAAGAATAACAAAAATGTGTCCCTACGCTCCTGTCAGACGCCTGGGCGATTACATTTCTGTGAAGTCAGAAAAGAGGATACTGATGTATATTTCTGTGATAGACAAATAATTGAGCAAGGAGTCAATTGGACCTTCAGGAGGGCTGTTCACGTCACAGTCATCGCTAAATTAGATGAACCTCCCAGCATTATTTATCCCTATGGCAACATAAAAGAGGAAGTGGAGCTTGACCGTTTGCCCGAGGTGAGGTGGTACAGGAACTACGGTGGCAAGATGGAGAATATGACTCTACTACCCATGGAATCCAAGGACATGGGCCTATTTGTGCTCGAGGTTATACAAAGAGCCGTCATAGAAGAGGTGACTCCACAACTCTTGAACCAGTATCACACGTATACCTGCATCGCCAATAATACTCATGGAAACACCAATGCCACCATCAAGCTCATCGAGAAAATGAAAGTAAAATGGCCGTCACTGGTTGGGTATCCCGTTGTGTCTTTGCTGCTGGTAGCTGGGCTGGGAATGGTTTTGCATGTGAAATGGCTGGAAATACAGCTTATCTACAGATCCCACTTCCAATGTGGAAAATATGATGGAGATAAGAAAGAGTTTGATGTGCTTCTGTCGTATGTGTGGAGCCCTCCAACAGCTGAGGTTGAGGGCGTTTTGACCATTTCCACCCAGAAAGGACCTGACACAGATGAGGAAGCATGTTTGTCCAGCATGGACCCGCTGAACACTGAGGAGGGTACCTCAACCCAGAGACCACTAGAAGTGCTGCTACCCCATGTGTTAGAGGACCGGTGGGCATATCGCCTCTGTCTTCTGGAGAGGGACGTGCTTCCTGGAGGAGCATATGCAAATGATGTGGTCCTTGCAATGCAGAGAAGCCGAATGCTTATCTGTCTCCTGTCAGCTGACTACCTCTCCAACAGCAATGCTGTGTTTGTACTGGAATCGGGAATCCAGGCTTTGCTGCAAAACTCTTCCCTCAAAGTCCTGCTAATATGGGTCAGCAGAACGTCAGCATCCCTCATCCAGCCGGACCCCCCGCTGCCCACAGTGGTCCAAAGGGCCTTGAAGGTGCTACCCAGTCTGGATTGGACCTCAGGCGAACCCGCCAGAGCCACCAACAACTTCTGGAGGTCTTTGAGGAAGGCCATGCCCGATCAGAGAGTGGCGCTGGTTTCACTCATGCAGGACCAATGATTAGACTGTTCGGTTTGCAAGCAAGGGCAACACATGAACAACAGCGTCAAGGTAATTTTCATATGATGGGGAAAGCGTGTCACCCTTTGTGCCATGCTCAGAGCACAACGGTGTGTACTCTGGTCTTTAATTTCCATCTGTACCAAAGATAAACTGTTTCGGTTAAACAGTGCAAAATAATTTACAGGATATAACAGTTAAAGGATTTGTTTTAGTCCATTGATAAAATATGTCTAAACAATGGATGCTTCGTAACAATTAAACCTAATTACCTTTTATATGCCTGTATGTactatgtaatgtaatatatatatcagCTTAAGTAAATCATGTATtgtcacagcagacatgtctgcaataaacatttgacacaataTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37790 lncRNA upstream 2279 19109918 ~ 19111687 (+) True G28409
TU37789 lncRNA upstream 10310 19103360 ~ 19103656 (+) True G28408
TU37788 lncRNA upstream 10891 19102717 ~ 19103075 (+) True G28407
TU37787 lncRNA upstream 12177 19101053 ~ 19101789 (+) True G28406
TU37786 lncRNA upstream 13327 19100419 ~ 19100639 (+) True G28405
TU37857 lncRNA downstream 33057 19156597 ~ 19156813 (+) True G28465
TU37865 lncRNA downstream 66578 19190118 ~ 19191162 (+) True G28473
TU37867 lncRNA downstream 68232 19191772 ~ 19193265 (+) True G28474
TU37873 lncRNA downstream 73206 19196746 ~ 19198227 (+) True G28479
TU37890 lncRNA downstream 106415 19229955 ~ 19230628 (+) True G28492
XM_039794661.1 mRNA upstream 4903 19104266 ~ 19109063 (+) True LOC120555696
XM_039794662.1 mRNA upstream 26902 19074308 ~ 19087064 (+) False LOC120555697
XM_039794969.1 mRNA downstream 3340 19126880 ~ 19131343 (+) False stk16
XM_039794968.1 mRNA downstream 3349 19126889 ~ 19132812 (+) True stk16
XM_039794262.1 mRNA downstream 41054 19164594 ~ 19168813 (+) True mnx2b
XM_039794307.1 mRNA downstream 50652 19174192 ~ 19181908 (+) True atic
XM_039795468.1 mRNA downstream 113705 19237245 ~ 19256129 (+) False rbms1a
TU37478 other upstream 545486 18561895 ~ 18568480 (+) False LOC120556478
XR_005638756.1 other upstream 1371232 17724548 ~ 17742734 (+) True LOC120555788
TU36678 other upstream 3627545 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 3667574 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 5876147 13235235 ~ 13237819 (+) True LOC120556202
TU38013 other downstream 363706 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 374198 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 374553 19498093 ~ 19498224 (+) True LOC120556586
XR_005638835.1 other downstream 388816 19512356 ~ 19520218 (+) False ercc3
TU38234 other downstream 1587564 20711104 ~ 20761147 (+) True G28770

Expression Profile