RNA id: XM_039794986.1


Basic Information

Item Value
RNA id XM_039794986.1
length 4256
RNA type mRNA
GC content 0.53
exon number 23
gene id efl1
representative False

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7939212 ~ 8069667 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTTTAAAATATGTGCTTATTCTCACAATACTGATGTATTTTACTCGACACGGCAGCGTAGCGCGTGACAGTGGTATTGTGTGTAGACTCTAGAAGCCAGGTGTTCACCATGGGACACACCAGCCTGGATAAGATCATTGCACTGCAGAGAAACCCTGCCAACATTAGAAACCTTTGCATTCTGGCACATGTTGACCATGGCAAAACTACTCTGGCTGACTGCTTGGTGGCAAGTAATGGTATCATATCAAGTCGGCTGGCTGGGAAGCTGAGGTATCTGGACAGCCGGGAGGATGAACAGATCAGAGGAATCACCATGAAGTCCAGTGCCATCTCCCTGCATTACAGAAATGGAGATCAGGACTACCTACTAAATCTGATCGACTCTCCTGGTCACATTGACTTCTCCTCAGAGGTTTCCACTGCTGTCCGCCTGTGTGACGGGGCCATTATAGTTGTTGATGCTGTGGAGGGAGTGTGTCCTCAGACCCAGGCTGTGCTGCGCCAGGCGTGGCTGGAGAACATCAGGCCCGTCCTGGTCATCAACAAGATAGACCGACTCATCCTGGAGCTGAAGCTCACCTCTCAGGAAGCTTACAGCCACCTGCAGAAGATCCTGGAACAGGTGAACGCGGTTACAGGCGCTTTGTTCACATCCAAAGTGATGGAGGAGCGGgcggagaaagagaagaaggaggaggaggcggcggaggaggaggagaaagaaagcGAGATCCTGAGTGGAGATCAGGTTTATGACTGGAGCGCCGGGCTGGAGGAGGCCGACGACTCCCAACTCTACTTCTCCCCCGACCAGGGGAACGTGGTGTTTGCCTGCGCCATCGATGGCTGGGGCTTCAGCATCCAGCAGTTTGCCCACATCTACAGCCAAAAAATGGGTATCAAGGCAGAGGTGCTGCTCAAAACCCTGTGGGGAGATTTCTACCTCAACGCTAAAGCAAAGAAGATCATGAAAGGAGCTCAGGCCAAAGGAAAGAAGCAGCTGTTTGTGCAGCTCGTGCTGGATAACATTTGGAGTTTATATGATGCCGTTGTCACTAGGAGAGACAAGGAGAAGGTGGAGAAGGTGATAGCATCGCTCGGGGTGAAGGTGTTGGCCAGGGACTCTCGTCACTCGGACCCCAAAGTTCTTCTTTCTGCCATCTGCAGCCAGTGGTTACCTCTGGCCCAGGCTGTCCTCTCGATGGTGTGTGAGAAACTTCCCAGTCCCATAGACATGACGGCAGAGAGGGTGGAGAAACTGATGAGTGTCGGGCCGCGGCGGTTCGACTCACTGCCCGAACAGACGCAAGAGCTGAAGAGAgCGTTCCTCCAGTGTTCCAGTGGGGAAAACGATCCGCTCATCATCTTTGTGTCCAAGATGTTTGCTGTTGATACCAAGGCCTTTCCTCAGAACAGACAGaggccgTTGACCCAGGAGGAGATAGCCCAGCGCAGGGAGCTGGCTCGGCAGAGACATGCTGACAGGATGGCAGCTGATCAGACGGTAGCAGAGAGCCGCTCACAGGAAGGCCAACCTGCAGGATGTGACTCAGCTAAGATGGAGGGTCTGACCCTGAAGGACTCCCAGCCGGAGGAGGAGGATCAGCAGACCTTTGTCGCGTTTGCGCGGGTCTACAGCGGCGTGGCCAAGAAAGGACAGAGAGTATTTGTGCTGGGACCAAAGTATGACCCCGCCCGGGGCCTGAGCATGCTGCCAGAGGGTTCCAGTGCTTGGGACCGTGTGCCTGCCGTGCCCCATCTGTCCGTCTGTTCCATGGACAGCCTCTACCTGCTGATGGGCCGGGAGCTGGAGGAGCTGGACGAGGTGCCTGTGGGGAATGTCCTGGGTATCAGAGGTCTGGAGGAGTGCGTGTTGAAGTCGGCCACACTGTCCAGCTCCCCCGCCTGCCCGCCCTTCATCCCACTCAACTTTGAGGCCACACCCATTTTACGGGTTGCCATAGAACCCAAACACCCAAGCGAGATGCCCAAGCTGGTGCGTGGGATGCGTCTGTTGAACCAGGCGGATCCCTGTGCTGAGGTTCTGATCCAGGAAACGGGAGAACACGTTCTGGTCACGGCTGGCGAGGTTCATCTCCAACGCTGCCTGGACGACCTCAGAAAGCgGTTTGCTAAAATAGAGATTAGCGCGTCCAAGCCCATCATTCCATTCAGAGAAACAGTGGTACGTCCCCCGAAAGTGGACATGGTGAACGAAGACCTTGGGAAGCAGCACAAAGTAGCCATCATTCACCAGGTGAAAGAAGAGGCCTCTCAGGGTCGTCCGTCTGACACCCTCCATGTGGACCACAGTGGACTGGTCACCCTCACAACTCCCAACAGACTGGCCACTGTCAGCGTTCGGGCCATCCCCCTGCCACAGGaggtGACCTGTCTGTTGGAGAGCAGCACGGAGCTGATTCGGACTCTAGAGCAGGTGAACATGTCCCTGAGGGAGGGGAAGAGTCTGGACGTCAGCCCCAGGACCCTGGAGGCCATCGCTGGACTCAAGGCCCAGCTGGAGAGCCTGCTGCAGGGGAGGAAGTGGAGGAACGCTGTGGAGCATATCTGGGCCTTTGGCCCTCGCAGatATGGTCCCAACATCCTGCTGAACCTTGTGGAGGGCTACCAGCGGCCCTCGCTGTGGCAGTGTCTGGGCAGGGGAGACCAAGCTGGCGAGGCCGGAGCTCAGGCCGCCGGTATGCGAGACTTGGACAACAGCATCGTCAGCGGCTTCCAGCTGGCAACTCTGTCAGGGCCCATGTGTGAGGAGCCCCTGATGGGAGTGTGCTTCGCTGTGGAGAGGTGGGACATCCAGTCTTCTGCAGCCGTGCCACAGCATCAGGACTCCTTGGAGGAGGACTCCATATCCCATGGGGCTTTAACAGACAGCAGAGTGGAAGGAAGCAGTGAGACATGGACAGCGGGGCCGTGCCAGGCCAGGCGCAGGCCGCAGGCGGCCTCTGCAGACTGCTACGGGCCGGTCTCCGGTCAGCTGATTGCCGCCATGAAGGAGGCCTGCCGCCACGCCTTCCAGGCTCAGCCCCAGAGGCTCATGGCTGCCATGTATACCTGCGAGATAATGGCCACTGCTGAGGTGCTGGGCCGAGTATATGGCGTACTGGGGAAGCGAGAGGGTCGTGTCCTCCATGAAGAGATGAAGGAAGGGACGGACATGTTCATCATCAAGGCTGTTCTGCCTGTGGCCGAGAGCTTTGGATTTGCCGATGAGATCCGCAAGAGGACCAGCGGATTGGCCAGTCCACAGCTGGTCTTCAGCCACTGGGAGGTGATCAGCAGCGACCCATGCTGGGTTCCCACCACAGAGGAAGAATACCTGCACTTCGGGGAGAAAGCCGACTCTGCAAACCAGGCCCTGAAATACATGAACGCTGTCCGCCGCCGCAAAGGCCTCTACGTGGAGGAGAAGATAGTCGAGCACGCAGAGAAGCAGAGAACACTCGGCAAGAACAAGTAGAGAAGAAAACCAGATAGAAGAAAGCTCCAGCAGGGAGACTGCAGACACTTCCTGTTCACCATGGACACTTCCTGTTCACCACGGACCGGGCTCTTCCATCACATGACAAAGGGACAGACGGCCAGTCCGAATGTAGAAGTCTCTCATTTCAAAGATACCTCCTTCACAGTCCTGCTGTTCATTGAACAGTCAGGGATGATTTCTTGTGTGACAGAATACATTTTTGCGAAAACACATATTTGGGAGTCTTGGTTGATTTGGGTGAATGATAAATATTAAAGAATAAATTCTGTATCCCAAAGTTATCTTTTTTAGAAATCTGATTGTTTTCCTTAGTTTTTAAGGCTAATATAAGATCGCATGGGCAGTAAATACTGACCAATCAAATGGCATTGTAAcaacgcattatgtaataacaaattatgtaataaaatgtaaaaatgtattaaaatttcacttcattatgtaataacacccgCAATATGTTAAATCTGCATTATGTAACAAccaaccaaaatgtattttttttctctactgGCTTTGAAAGGCATATGaagaaaaacaccaaaaagtaataaatatagcctatttTACATCAAATATTTGAAATGCTCGTCTTATCTTTACTTACATGCATTATGTACTATTTATTACAAAATGCCGCAGATTATTACATAATGAAGTAAACTtattacattttgacatttcattACATAATGTGGTGTTACACTGGATGGTAAATGATCAAGTTCAATAAACAATTGTGTTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34888 lncRNA upstream 94898 7846501 ~ 7846739 (+) True G26028
TU34885 lncRNA upstream 106456 7834903 ~ 7835181 (+) True G26025
XR_005638768.1 lncRNA upstream 225479 7713299 ~ 7716158 (+) True LOC120555855
TU34815 lncRNA upstream 267696 7665796 ~ 7673941 (+) True G25959
XR_005638762.1 lncRNA upstream 307140 7632831 ~ 7634497 (+) True LOC120555849
TU34931 lncRNA downstream 43519 8113186 ~ 8113391 (+) True G26063
TU34943 lncRNA downstream 147319 8216986 ~ 8217378 (+) True G26075
TU34957 lncRNA downstream 180392 8250059 ~ 8250273 (+) True G26089
XR_005638851.1 lncRNA downstream 185079 8254746 ~ 8256037 (+) True LOC120556411
TU34961 lncRNA downstream 194034 8263701 ~ 8263943 (+) True G26093
XM_039795115.1 mRNA upstream 158138 7775633 ~ 7783499 (+) True LOC120555922
XM_039794981.1 mRNA upstream 270836 7354877 ~ 7670801 (+) True adamtsl3
XM_039794983.1 mRNA upstream 341278 7354877 ~ 7600359 (+) False adamtsl3
XM_039794993.1 mRNA upstream 610935 7317909 ~ 7330702 (+) True LOC120555848
XM_039794990.1 mRNA downstream 71217 8140884 ~ 8146927 (+) True mex3b
XM_039796114.1 mRNA downstream 475594 8545261 ~ 8601676 (+) False LOC120556467
XM_039796113.1 mRNA downstream 477520 8547187 ~ 8601678 (+) False LOC120556467
XM_039796111.1 mRNA downstream 477520 8547187 ~ 8601677 (+) True LOC120556467
XM_039796112.1 mRNA downstream 489547 8559214 ~ 8601677 (+) False LOC120556467
TU34538 other upstream 1651861 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1651861 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1653560 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1674929 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 1888740 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 684034 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 999062 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 1497164 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 1777610 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 3961954 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile