RNA id: XM_039794993.1


Basic Information

Item Value
RNA id XM_039794993.1
length 2800
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120555848
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 7317909 ~ 7330702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCGTCAGCCACGCTAATCTGCTTTAAGGGGAGAAGCTTGCACACACAGACTCTGATAAACAGAGGGGAAACGGGCTGCTGTCCACTGTACGGGAGCACACAGCATCACACGGTGTTTGTGGATACCAAGCTAGTGATGTGAGGCTCCTGGCATGAGTGAATGGCCCCTTACATAGCAGACATGACATCAGAGGAACCCCTGGGCCCGTGGGTGCCCAGCCCTGTCGGGGAGGTCAAGGTACTGCCTGAAGACGGGCTGGAGGAGCAACtcaacagctgcaaccaagaagTAATGCACTATCACACATGTGACATGGCCACTGAGGAATGTGCAGCAATCCCTGACAGTCTGTGCAGCGACGAGCCGTTTTGTAGGATCTGCCATGAAGGCAGGGCCTCAGGGGAGCTGCTGTCCCCCTGCGAGTGCTGCGGTAGCCTGGCCATGGTGCACCGCACATGCCTGGAGCACTGGCTCACCGCCTCCAACAGCAGCCACTGTGAACTCTGCCACCACCAGTTTGCACTGGAGCGCCTGCCAAAACCTCTTACTGAGTGGCTGTGCGCTCCCTCCGTGCAGCAGCAGCGGAGGACGCTGTGTGGCGATGCGGTGTGCTTCCTGTTCATCACGCCGCTGGCCAGCCTGTCAGGATGGCTGTGTGTCCAGGGAGCCATGGACCTGTACTACACCAACGCCATGGAGGCCCTTGGGCTGCTGGTCCTCACGCTGGCCCTCTTCACCATATACGTCTTCTGGACCATGGTACGCTCAGGGTCTCTGTGCGCTACCACATGCATCTGTTCCAGACATGGAAGAAGACGGACCAGAGAGTGCGACTGCAGATTCCCTTGCCCCCCCATACCACAACGACCCAACAGACCCTGTCCATAAACCTCCTCAGCAAAGCCCCCAACAAAGAGACTATGGTGTAGTAGACTGCAGTCTACATTACTGAACATACCTCAGATAGAAGGGAAGAGGGGACCCAAACTCAGGACATGCCCCAATCCCGACATAACAGCAGAGTTAAAGCCAGGGTTGGAAGACTCCTTCAAGAGCTGCTGGAACCTTTTCGGGAACAATTGAGTTAAAGGAGCAAAGACTAACCGAGACTCCTCGCAACCTTTGACTTGTCTTACAGCGATAAAATGTGACATTGTCCCAAAATAAGAAGAGTCATTCTGGCAACTGTGGACATGTTCGGTATCTTCTAGAGTCTACAGTGACAATCAGTATCATTGTTTCCTGAAGACAACGAAGCATCCTGGACTTATCTGACAATCCAGTTGTTTTTCCTCCTCGTGGAATAAGCTCATGAAGACAAATCTGTTGCAACTTGGCACTTCTAATATCTACAACGCGAGTGTGTTTAACTTATAATTAGAAGAACTAAAGTCCAGCTTTGTAGCTCTTCAGCTGTTCAGATTTGAATCATACTATTACAAACTTTTAAGTTAGGCTTTGCTCATTATTCATGACATAGCTGATCGTAGCGTTTCTAcggcgttccatttacctcagaAGTCGgaaatgacgtcacacccgagcTGACCGCAGTTACAACTAGAGATGGTCCCATAATATTTTTTGAGTATCGGCCGATACTTAATACCGATCAGATACcagtatggatgtgatatgatttctataaTTTTTTGTACAGTCTGGCTCGGGTTAaagcttttgtgaaacaggaacacaaacaaacaacgaATGCCGTAGAATTTTATTTTACTCTCCAGTTTGTCATAGCGGACAAAGAACAAAAATTACTTCCAAGTAGATTTTCTTGAGGTCTAAATTACGTGGTATCAGATCGATGCATAGAGATCCAGAGTTCCAATactgataccagcattttaggcagtatcggaggcttttcccaatactggtatcggtacCTCTCTAGTTAAAAGTCGGAAAAAACGGGGGTAAGGGGTACTCCCGCCCGGCTAGCCATTGtcagcaataccagttgatagcAACGCACTACGTTGTACTTTGTGCAGTCAAACACCATAGCAACATGCCCACAAATAGAAGCTGGACAGAACTGTGTGTACGATTGATTTAATGAGACAGAAGTGCTCAAAAACTGTATACAACCACAGCTTTTACTACTGTTAAAGCtcagagcagccatgttggatggTGGTGGCTGTGTTGGTGAGGTTCTCCCtactttccccccccccagagTCGAGAGCGATGCAATGACGTCTTTGCAGAAACAGTGTCCCTTATATCCACCGATCTCATTGTGACGTTTCATTGGAACTACTTTCTGAAGTAGTCCCTATGAAAATTAGTAATCATTTCATTGATAGGAAGGTTTCCGGCCATCAGTTTCTTATTTTTTGGCACTCTAAAATAATAGTTGTGGGCTGCTCAGAGATCTTTGTTAGTATTCCAACTTTACCACAGCAGCCAGACGCAAAATCATTTTGCAATATTTAAGCCATTTCCTGCATTAACACTTATGCATATGCGCAAAATTTATGCACATCAAAAAGTGGAAGAATCAAACCTGTTGCGTTTTGTGGACTACCCTGAGAAACCAGGATACAGTTTCTAAAAATCTGCATGGTAAATACCAGAGGAAAGTGAGAAAGGGTGTTTGAAAATGTGCAAATGACATTTGTTGGGTATTTGGGTGAACCAACCCTTTAACCTGTGCTGCTTCCTCCGGCTATTCATTTTAGTTCTTAACAGTAAGTTAAGTGTTGTGTGAGCCTTCCAGCACAGCTTCTCCTGCAAAATTTAACTAGAATGCTTTTGTTGTAATAAACAGTCTTAATACAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34791 lncRNA upstream 19208 7298499 ~ 7298701 (+) True G25942
XR_005638846.1 lncRNA upstream 272748 7042183 ~ 7045161 (+) True LOC120556370
TU34746 lncRNA upstream 292148 7023866 ~ 7025761 (+) True G25902
TU34734 lncRNA upstream 312262 7002428 ~ 7005647 (+) False LOC120556365
TU34739 lncRNA upstream 324705 6992995 ~ 6993204 (+) True G25895
TU34800 lncRNA downstream 8 7330710 ~ 7337252 (+) True G25950
XR_005638763.1 lncRNA downstream 299420 7630122 ~ 7632825 (+) True LOC120555850
XR_005638762.1 lncRNA downstream 302129 7632831 ~ 7634497 (+) True LOC120555849
TU34815 lncRNA downstream 335094 7665796 ~ 7673941 (+) True G25959
XR_005638768.1 lncRNA downstream 382597 7713299 ~ 7716158 (+) True LOC120555855
XM_039795970.1 mRNA upstream 27039 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795971.1 mRNA upstream 27039 7232548 ~ 7290870 (+) False sh3gl3a
XM_039795969.1 mRNA upstream 27040 7232548 ~ 7290869 (+) True sh3gl3a
XM_039795696.1 mRNA upstream 106332 7186729 ~ 7211577 (+) True bnc1
XM_039795921.1 mRNA upstream 312231 6993956 ~ 7005678 (+) True LOC120556365
XM_039794981.1 mRNA downstream 24175 7354877 ~ 7670801 (+) True adamtsl3
XM_039794983.1 mRNA downstream 24175 7354877 ~ 7600359 (+) False adamtsl3
XM_039795115.1 mRNA downstream 444931 7775633 ~ 7783499 (+) True LOC120555922
XM_039794987.1 mRNA downstream 608510 7939212 ~ 8069667 (+) False efl1
XM_039794985.1 mRNA downstream 610858 7941560 ~ 8069667 (+) False efl1
TU34538 other upstream 1028133 6288190 ~ 6289776 (+) False LOC120555541
TU34541 other upstream 1028133 6289056 ~ 6289776 (+) False LOC120555541
TU34546 other upstream 1029832 6287048 ~ 6288077 (+) True G25743
TU34539 other upstream 1051201 6264974 ~ 6266708 (+) True LOC120555541
unassigned_transcript_139 other upstream 1265012 6052815 ~ 6052897 (+) True trnal-uaa_1
TU35083 other downstream 1422999 8753701 ~ 8760301 (+) True G26205
TU35121 other downstream 1738027 9068729 ~ 9155343 (+) True G26236
TU35242 other downstream 2236129 9566831 ~ 9604436 (+) False adamts17
TU35313 other downstream 2516575 9847277 ~ 9860000 (+) True aldh1a3
XR_005638880.1 other downstream 4700919 12031621 ~ 12031728 (+) True LOC120556595

Expression Profile