RNA id: XM_039795023.1


Basic Information

Item Value
RNA id XM_039795023.1
length 3712
RNA type mRNA
GC content 0.53
exon number 21
gene id LOC120555872
representative True

Chromosome Information

Item Value
chromosome id NC_053114.1
NCBI id CM020911.1
chromosome length 46923577
location 17609461 ~ 17624532 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtcgcctcGTCCAGCAGAGCTGAAATGTCACTTTGCTGTCTGTAGGCCTTGCAGCACAGGCACCCTGAGTGTGTGACTAGGGGGGCTCAGGACCTACTTGTGAAGGGGGGATTATAATGTGCTTTGTTATTTGACAGAAGTAGTGTTAACTTACCACCTACCTCTGCTTGTTTGTGTTCATATTCACGagccagagagaggacactCAGTGGCCATGTCGACCCTCCTGCGCTGCATCTCCAGCTCTTCTGTCGTTTTGTTCCAGCGAGGGGCCCACCAGAGGATACCTGGAAGAAGGCATTTCAGGACTTTCCCTGTGTTATGGGACCAAAAGGCCTCTAGAGGTGTGCTCTACAAGGACCTGGTGGTTGGGGTTCCCAAGGAGACGCTACAGAGTGAGCGCCGTGTGGCGTTGTCTCCTGCGGGGGTAGAGGCGCTGGTCAAACAGGGCTTTAATGTGCAGGTGGAGAGTGGAGCTGGAGAGGCATCCAAGTTCTCTGATCAGCAATACAAAGATGCCGGAGCCACCATCACTGATGTCAATGGAGCGCTTGGCTCAGACTTGGTCCTTAAGGTTCGAGCCCCCAGTTTGAGCGAGGCAGACCTCCTGAAGCCTAACTCCACCTTGGTGAGCTTCATCTATCCAGCCCAGAACCCAGAGCTGATGGAGAAGCTGTCAGAGAGGCGGAGCAATGTGCTGGCCATGGACCAGGTGCCCAGAGTCACCATCGCACAGGGCTACGATGCACTCAGCTCCATGGCTAACATCGCTGGGTACAAGGCTGTGGTTTTGGCTTCTAACCACTTTGGCAGGTTCTTTACTGGTCAGATCACAGCGGCAGGAAAAGTACCCCCAGCTAAGGTCCTGGTTATTGGAGGTGGAGTGGCTGGCTTGGCAGCAGCAGGTACAGCCAAGTCGATGGGAGCCATAGTCAGAGGGTTTGACACAAGGCCAGCAGCACTGGAGCAGTTCAAATCATTTGGGGCAGAGCCTTTAGAGGTAGACATCAAGGAGTCTGGCGATGGAGTCGGAGGTTATGCCAAAGAGATGTCTAAGGAGTTCATTGACGCTGAGATGGCCCTTTTCGCCAAGCAGTGTAAAGAGGTGGACATTCTCATCAGCACTGCCCTGATTCCAGGGAAGCGGGCTCCCATTCTGATCAAGAAGGAGTTTGTGGAGTCGATGAAGGACGGCTCTGTGGTGGTGGATCTGGCTGCAGAGGCAGGGGGCAACATCGAGACCACCAAGCCTGGAGAGCTGTACGTTCACAAGGGAGTAACACACATTGGCTACACAGACCTGCCCAGCCGCATGGCCACCCAGGCCAGCACTCTGTATTCGAACAACGTACTGAAGCTGCTGAAGGCCATAAGCCCAGACAAGGAATACTTCCACTATGAGCCCAAAGATGAATTTGACTATGGGACAATTGACCATGTCATCCGTGGGACTCTTGTTATGAAGGAGGGCAAGAACATTTTCCCGTCCCCTCTTCCAAAAACAGCCCCCCCAGCCCCAGTGAAACAGAAAACAGTGGCAGATTTGGAGGCTGAGAAAAAGGCGGTGATCTCTCCCTTCAAACGCACCCTGACCTCTGCTAGCGTCTACACTGCAGGTGTGTCCACCTGTCTGGCTCTGGGAATCATCTCCCCCAACGCAGCCTTCACTCAGATGGTCACCACCTTTGGCTTGTCTGGGATTGTGGGATACCACACTGTGTGGGGCGTGACCCCCGCTCTGCACTCACCTCTCATGTCTGTCACCAACGCCATCTCAGGTCTGACAGCAGTTGGAGGTCTGGTGCTGATGGGTGGAGGTCTCACACCCTCCACTCTTCCTGAGAGTCTCGCTCTTGCTGCTGCCTTTGTTTCCTCCATCAACATTGCTGGTGGTTTCCTGATCACCCAGAGGATGTTGGACATGTTCAAGCGTCCCACTGACCCTCCTGAGTACAACTACTTGTACATGCTGCCCGGGGCTGCCTTTGTTGGGGGATATGGAGCCTCCGTGGCTGCTGGGTACAACATCGAGCAGatGATGTACTTGGGGTCAGGTTTGTGTTGTGTCGGGGCGCTGGCAGGCCTCTCTGCCCAGGGAACCAGTCGCTTGGGAAACACGCTGGGCATGATGGGAGTGGCAGGGGGCATCGCTGCCACGCTCGGTGCCCTCAAACCCTCACCAGAGCTGCTGTCTCAGATGTCTCTGGCCATGGCCACTGGGGGAACCCTGGGTCTGACCCTTGCCAAGCGTATTGAAATCTCAGACTTGCCGCAGCTTGTGGCCGCCTTCCACAGCCTTGTGGGACTGGCAGCTGTTTTCACCTGCGTTGCCGAGTTCATGATTGAGTACCCCCACCTGGACACTCACCCAGCCGCCAGCGTACTCAAGACTGTGGCGTATCTGGGCACCTACATCGGAGGCGTCACTTTCAGTGGCTCACTGGTGGCCTACGGCAAGCTTCAAGGCATCCTGGACTCCGCCCCCCTGCATTTGCCAGGACGACACATGCTGAATGCCGGTCTGATGGCAGCGTCAATGGGAGGCATGGTGCCCTTTATGCTCAGTTCCAGCTACGGTACTGGCATGGGGTGTCTAGTGGGAGTGTCTGGGCTTTCCACTATTATGGGTGTAACCCTGACGGCAGCCATCGGGGGCGCTGACATGCCTGTGGTTATCACCGTGTTGAACAGCTACTCTGGATGGGCGCTCTGTGCCGAAGGCTTCTTACTAGATAACAATCTGATGACGATTGTCggagctctgattggctcctCTGGTGCCATCCTCTCCTACATCATGTGTGTGGCTATGAACCGCTCCCTGCCCAATGTGATCCTGGGTGGGTACGGCACCACCTCCACAGCTGGCGGTAAACCCATGGAGATTGTTGGCACTCACACTGAGGTCAATCTAGACCAGACCATTGACATAATCAAAGAAGCCAacagcatcatcatcacaccAGGTTGGGGTCTGTGTGCAGCAAAAGCCCAGTACCCGATTGCAGACATGGTGAAGATGCTGAAGGAACAGGGCAAGAATGTCAGGTTTGGTATCCACCCAGTGGCCGGTCGTATGCCCGGCCAGCTGAACGTCCTTTTGGCTGAGGCTGGTGTTCCCTACGATGTGGTCCTGGAGATGGATGAGATCAACGAGGACTTCCCAGAGACAGACTTGACACTGGTGATCGGAGCCAACGACACAGTGAATTCTGCAGCACAAGAAGATCCTAACTCCATAATTGCTGGCATGCCTGTCCTGGAAGTGTGGAAGTCCAAACAGGTGATAGTGATGAAGCGTACCTTGGGCGTGGGCTACGCTGCAGTAGACAACCCCATTTTCTACAAGCCCAACACATCAATGCTGCTGGGAGATGCCAAAAAGACGTGTGACGGCCTGCAAGCGAAGATCAGAGAGACCTTCTACTAGCGACTCCTCATTAGCTCACCATCATCGACAGTAGTTTAAGTAGAGGCACACTGACCGATACTGCATTTCCACCATTGGCTTTCAGGATATATATTTTTGGAGAGCAGATTTATGGGGTCTGAAACAAATGTTCAATTACAAAGATGCCCAAGATTCATAAgatgatttattttgtttattttttttttgaagataaGGGACATGAATAGCTCAAACAGAAATGTGTACCgatttgtaaataaaaatatttaaaaacgta

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008750 NAD(P)+ transhydrogenase (AB-specific) activity molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K00323 NNT; H+-translocating NAD(P) transhydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37112 lncRNA upstream 114540 17494748 ~ 17495773 (+) True G27895
TU37100 lncRNA upstream 144669 17381379 ~ 17465644 (+) True G27884
TU37095 lncRNA upstream 296223 17313888 ~ 17314090 (+) True G27879
TU37093 lncRNA upstream 315362 17292715 ~ 17294951 (+) True G27877
TU37037 lncRNA upstream 437842 17172255 ~ 17172471 (+) True G27840
TU37205 lncRNA downstream 113903 17738435 ~ 17743448 (+) False LOC120555788
TU37215 lncRNA downstream 201332 17825864 ~ 17826910 (+) True G27977
TU37336 lncRNA downstream 247214 17871746 ~ 17876173 (+) True G28066
TU37335 lncRNA downstream 264229 17888761 ~ 17889217 (+) True G28065
TU37334 lncRNA downstream 264318 17888850 ~ 17889217 (+) False G28065
XM_039795731.1 mRNA upstream 15152 17579325 ~ 17595161 (+) True slc30a4
XM_039795733.1 mRNA upstream 21003 17579316 ~ 17589310 (+) False slc30a4
XM_039795735.1 mRNA upstream 22664 17579317 ~ 17587649 (+) False slc30a4
XM_039795734.1 mRNA upstream 22665 17579315 ~ 17587648 (+) False slc30a4
XM_039795730.1 mRNA upstream 44106 17564615 ~ 17566207 (+) False mibp2
XM_039795908.1 mRNA downstream 70576 17695108 ~ 17702125 (+) True cops2
XM_039795909.1 mRNA downstream 70576 17695108 ~ 17702125 (+) False cops2
XM_039794850.1 mRNA downstream 77771 17702303 ~ 17720257 (+) True secisbp2l
XM_039794851.1 mRNA downstream 77771 17702303 ~ 17720257 (+) False secisbp2l
XM_039794853.1 mRNA downstream 77771 17702303 ~ 17720257 (+) False secisbp2l
TU36678 other upstream 2123892 15475164 ~ 15486421 (+) False LOC120556001
TU36647 other upstream 2163921 15441477 ~ 15446392 (+) False LOC120556433
TU36145 other upstream 4372494 13235235 ~ 13237819 (+) True LOC120556202
TU36106 other upstream 4499974 13109757 ~ 13110339 (+) True G27086
XR_005638880.1 other upstream 5578585 12031621 ~ 12031728 (+) True LOC120556595
XR_005638756.1 other downstream 100016 17724548 ~ 17742734 (+) True LOC120555788
TU37478 other downstream 937363 18561895 ~ 18568480 (+) False LOC120556478
TU38013 other downstream 1862714 19487246 ~ 19487533 (+) True G28581
XR_005638873.1 other downstream 1873206 19497738 ~ 19497873 (+) True LOC120556587
XR_005638872.1 other downstream 1873561 19498093 ~ 19498224 (+) True LOC120556586

Expression Profile